Wall clock time and date at job start Mon Mar 8 2021 09:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86295 * 109.46926 * 2 1 4 4 C 1.86296 * 109.47138 * 240.00035 * 2 1 3 5 5 C 1.86802 * 109.46996 * 119.99897 * 2 1 3 6 6 C 1.38318 * 119.87700 * 90.00430 * 5 2 1 7 7 C 1.38019 * 120.12031 * 180.02562 * 6 5 2 8 8 C 1.39345 * 119.87750 * 359.97438 * 7 6 5 9 9 C 1.48382 * 120.11968 * 179.97438 * 8 7 6 10 10 C 1.39329 * 120.09109 * 303.36368 * 9 8 7 11 11 C 1.38000 * 119.89813 * 179.97438 * 10 9 8 12 12 C 1.38529 * 120.09765 * 0.02562 * 11 10 9 13 13 F 1.35098 * 119.90246 * 179.97438 * 12 11 10 14 14 C 1.38572 * 120.19002 * 0.02562 * 12 11 10 15 15 C 1.37951 * 120.09572 * 359.70310 * 14 12 11 16 16 C 1.50707 * 120.04875 * 180.29502 * 15 14 12 17 17 O 1.42902 * 109.46804 * 105.35928 * 16 15 14 18 18 Si 1.86301 * 109.46853 * 345.36027 * 16 15 14 19 19 H 1.48499 * 109.47206 * 60.00166 * 18 16 15 20 20 H 1.48499 * 109.46531 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47127 * 299.99447 * 18 16 15 22 22 C 1.39343 * 119.75533 * 359.96212 * 8 7 6 23 23 C 1.38018 * 119.88018 * 0.05819 * 22 8 7 24 24 H 1.08997 * 109.47396 * 299.99996 * 1 2 3 25 25 H 1.09003 * 109.47219 * 59.99914 * 1 2 3 26 26 H 1.09003 * 109.47116 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47308 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47242 * 300.00072 * 3 2 1 29 29 H 1.09000 * 109.47739 * 60.00120 * 3 2 1 30 30 H 1.09003 * 109.47132 * 300.00009 * 4 2 1 31 31 H 1.09002 * 109.47479 * 59.99655 * 4 2 1 32 32 H 1.08995 * 109.47438 * 180.02562 * 4 2 1 33 33 H 1.07998 * 119.94140 * 359.96903 * 6 5 2 34 34 H 1.08001 * 120.05882 * 179.72571 * 7 6 5 35 35 H 1.07994 * 120.05427 * 359.96592 * 10 9 8 36 36 H 1.08009 * 119.94923 * 180.02562 * 11 10 9 37 37 H 1.08001 * 119.95080 * 179.97438 * 14 12 11 38 38 H 1.08994 * 109.47159 * 225.35675 * 16 15 14 39 39 H 0.96706 * 113.99993 * 299.99622 * 17 16 15 40 40 H 1.08004 * 120.05991 * 180.02562 * 22 8 7 41 41 H 1.07991 * 119.94017 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7154 -2.2440 1.4882 7 6 3.1749 -2.8998 2.6123 8 6 3.4079 -2.1856 3.7859 9 6 3.9014 -2.8853 4.9978 10 6 3.1840 -3.9560 5.5271 11 6 3.6469 -4.6042 6.6540 12 6 4.8226 -4.1914 7.2592 13 9 5.2719 -4.8285 8.3625 14 6 5.5387 -3.1263 6.7366 15 6 5.0862 -2.4763 5.6072 16 6 5.8692 -1.3223 5.0359 17 8 6.5471 -1.7465 3.8515 18 14 7.1168 -0.7373 6.2897 19 1 8.0441 -1.8488 6.6212 20 1 7.8888 0.3994 5.7265 21 1 6.4124 -0.2964 7.5204 22 6 3.1760 -0.8120 3.8172 23 6 2.7161 -0.1664 2.6873 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.5740 1.7565 -0.0005 28 1 2.1206 2.2703 -0.8900 29 1 2.1207 2.2703 0.8900 30 1 2.1207 -1.9059 -1.5211 31 1 2.1206 -0.3644 -2.4111 32 1 3.5740 -0.8786 -1.5209 33 1 2.5340 -2.7967 0.5782 34 1 3.3497 -3.9652 2.5835 35 1 2.2670 -4.2781 5.0563 36 1 3.0916 -5.4346 7.0648 37 1 6.4547 -2.8075 7.2117 38 1 5.1887 -0.5065 4.7925 39 1 7.1706 -2.4719 3.9937 40 1 3.3553 -0.2535 4.7241 41 1 2.5356 0.8980 2.7105 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_13286464.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:20:15 Heat of formation + Delta-G solvation = -75.293506 kcal Electronic energy + Delta-G solvation = -22255.079954 eV Core-core repulsion = 18944.230533 eV Total energy + Delta-G solvation = -3310.849421 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 304.116 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.89345 -41.13154 -39.19292 -37.56399 -33.44410 -32.93643 -31.79852 -29.85458 -29.25394 -28.42250 -28.39212 -27.07345 -24.42127 -23.31109 -22.86776 -21.88216 -19.02061 -18.11961 -17.75536 -17.31155 -16.70442 -16.64652 -16.19098 -15.81957 -15.64370 -15.35450 -14.94248 -14.70424 -14.35783 -14.28084 -14.18490 -14.03329 -13.83074 -13.81005 -13.55670 -13.28874 -13.23776 -13.12056 -13.07454 -12.90963 -12.64403 -12.21804 -11.99367 -11.95727 -11.75999 -11.01501 -10.87961 -10.77749 -10.46086 -10.20286 -10.01100 -9.70563 -9.16915 -0.22506 0.02218 0.51806 0.61808 1.05772 1.34122 1.45432 1.75384 1.84536 1.87765 1.97729 2.37820 2.57813 2.98515 3.10639 3.39548 3.52468 3.58801 3.73809 4.00816 4.05740 4.15532 4.23131 4.44074 4.54233 4.64420 4.70662 4.72037 4.73800 4.75837 4.77328 4.78125 4.79123 4.81289 4.93353 4.99358 5.12895 5.18075 5.30518 5.44554 5.50800 5.53274 5.55482 5.67577 5.69655 5.76508 6.17708 6.50277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.058 2.942 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.366 4.366 6 C -0.085 4.085 7 C -0.111 4.111 8 C -0.030 4.030 9 C -0.031 4.031 10 C -0.076 4.076 11 C -0.145 4.145 12 C 0.107 3.893 13 F -0.136 7.136 14 C -0.161 4.161 15 C -0.079 4.079 16 C -0.084 4.084 17 O -0.527 6.527 18 Si 0.938 3.062 19 H -0.249 1.249 20 H -0.248 1.248 21 H -0.246 1.246 22 C -0.118 4.118 23 C -0.085 4.085 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.124 0.876 39 H 0.374 0.626 40 H 0.119 0.881 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.232 0.565 -1.550 2.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.250 2.750 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.408 4.408 6 C -0.103 4.103 7 C -0.129 4.129 8 C -0.030 4.030 9 C -0.032 4.032 10 C -0.094 4.094 11 C -0.163 4.163 12 C 0.087 3.913 13 F -0.114 7.114 14 C -0.180 4.180 15 C -0.080 4.080 16 C -0.194 4.194 17 O -0.331 6.331 18 Si 0.761 3.239 19 H -0.173 1.173 20 H -0.171 1.171 21 H -0.169 1.169 22 C -0.135 4.135 23 C -0.103 4.103 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.156 0.844 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.142 0.858 39 H 0.221 0.779 40 H 0.137 0.863 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.950 1.272 -1.104 1.934 hybrid contribution 0.151 -0.952 0.463 1.069 sum -0.800 0.321 -0.640 1.074 Atomic orbital electron populations 1.26130 1.20558 1.04527 1.04436 0.78187 0.66758 0.66164 0.63883 1.26137 1.06531 1.18574 1.04490 1.26138 1.06522 1.08008 1.15069 1.27370 1.03917 0.99462 1.10075 1.20984 0.97125 0.94614 0.97570 1.21197 0.99700 0.99532 0.92511 1.18560 0.98949 0.93289 0.92247 1.18722 0.93927 0.95672 0.94847 1.21158 0.99554 0.93971 0.94739 1.21183 0.95796 1.02049 0.97316 1.17647 0.94682 0.93482 0.85455 1.91536 1.88859 1.80602 1.50413 1.21052 1.01723 0.97259 0.97960 1.20174 0.95575 0.97812 0.94397 1.25149 1.01029 0.97618 0.95616 1.86588 1.59153 1.56592 1.30780 0.85851 0.79098 0.81213 0.77786 1.17321 1.17136 1.16943 1.21201 1.00281 0.93392 0.98672 1.20977 0.97200 0.99579 0.92581 0.91193 0.91106 0.91203 0.90997 0.91033 0.91199 0.91216 0.91032 0.91012 0.86102 0.86338 0.84378 0.84095 0.84499 0.85840 0.77902 0.86278 0.86038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.66 8.65 101.05 0.87 1.53 16 2 Si 1.06 -2.51 12.31 -169.99 -2.09 -4.60 16 3 C -0.45 0.73 8.52 101.05 0.86 1.59 16 4 C -0.45 0.71 8.52 101.05 0.86 1.57 16 5 C -0.37 0.05 4.60 -39.52 -0.18 -0.13 16 6 C -0.09 -0.03 9.28 -39.63 -0.37 -0.40 16 7 C -0.11 -0.11 9.63 -39.25 -0.38 -0.49 16 8 C -0.03 -0.04 4.85 -104.90 -0.51 -0.55 16 9 C -0.03 -0.03 5.40 -104.89 -0.57 -0.60 16 10 C -0.08 -0.01 9.62 -39.26 -0.38 -0.38 16 11 C -0.14 -0.04 10.01 -39.56 -0.40 -0.44 16 12 C 0.11 0.17 7.30 -39.35 -0.29 -0.12 16 13 F -0.14 -0.38 17.26 2.25 0.04 -0.34 16 14 C -0.16 -0.15 8.63 -39.56 -0.34 -0.49 16 15 C -0.08 -0.06 5.26 -104.30 -0.55 -0.60 16 16 C -0.08 0.00 2.07 36.01 0.07 0.07 16 17 O -0.53 -0.31 12.82 -35.23 -0.45 -0.77 16 18 Si 0.94 -0.30 25.48 -169.99 -4.33 -4.63 16 19 H -0.25 0.07 6.74 56.52 0.38 0.46 16 20 H -0.25 -0.22 7.11 56.52 0.40 0.18 16 21 H -0.25 -0.08 7.11 56.52 0.40 0.32 16 22 C -0.12 -0.11 7.95 -39.25 -0.31 -0.42 16 23 C -0.09 -0.02 9.28 -39.63 -0.37 -0.39 16 24 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 25 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 26 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 27 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 28 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 29 H 0.07 -0.13 7.67 -51.93 -0.40 -0.53 16 30 H 0.07 -0.12 7.67 -51.93 -0.40 -0.52 16 31 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 32 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 33 H 0.12 -0.18 7.40 -52.49 -0.39 -0.56 16 34 H 0.12 -0.01 8.06 -52.49 -0.42 -0.44 16 35 H 0.14 -0.21 8.06 -52.49 -0.42 -0.63 16 36 H 0.14 -0.20 8.06 -52.48 -0.42 -0.62 16 37 H 0.14 -0.01 4.88 -52.49 -0.26 -0.26 16 38 H 0.12 -0.04 4.94 -51.93 -0.26 -0.30 16 39 H 0.37 -0.95 8.70 45.56 0.40 -0.55 16 40 H 0.12 -0.06 7.01 -52.48 -0.37 -0.43 16 41 H 0.12 -0.20 7.40 -52.49 -0.39 -0.59 16 LS Contribution 343.99 15.07 5.18 5.18 Total: 0.00 -4.80 343.99 -8.65 -13.45 By element: Atomic # 1 Polarization: -3.03 SS G_CDS: -5.04 Total: -8.06 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -1.96 Total: -0.24 kcal Atomic # 8 Polarization: -0.31 SS G_CDS: -0.45 Total: -0.77 kcal Atomic # 9 Polarization: -0.38 SS G_CDS: 0.04 Total: -0.34 kcal Atomic # 14 Polarization: -2.81 SS G_CDS: -6.42 Total: -9.23 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -4.80 -8.65 -13.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_13286464.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.840 kcal (2) G-P(sol) polarization free energy of solvation -4.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds