Wall clock time and date at job start Mon Mar 8 2021 09:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86295 * 109.46926 * 2 1 4 4 C 1.86296 * 109.47138 * 240.00035 * 2 1 3 5 5 C 1.86802 * 109.46996 * 119.99897 * 2 1 3 6 6 C 1.38318 * 119.87700 * 90.00430 * 5 2 1 7 7 C 1.38019 * 120.12031 * 180.02562 * 6 5 2 8 8 C 1.39345 * 119.87750 * 359.97438 * 7 6 5 9 9 C 1.48382 * 120.11968 * 179.97438 * 8 7 6 10 10 C 1.39329 * 120.09109 * 303.36368 * 9 8 7 11 11 C 1.38000 * 119.89813 * 179.97438 * 10 9 8 12 12 C 1.38529 * 120.09765 * 0.02562 * 11 10 9 13 13 F 1.35098 * 119.90246 * 179.97438 * 12 11 10 14 14 C 1.38572 * 120.19002 * 0.02562 * 12 11 10 15 15 C 1.37951 * 120.09572 * 359.70310 * 14 12 11 16 16 C 1.50707 * 120.04875 * 180.29502 * 15 14 12 17 17 O 1.42902 * 109.46804 * 105.35928 * 16 15 14 18 18 Si 1.86301 * 109.46853 * 345.36027 * 16 15 14 19 19 H 1.48499 * 109.47206 * 60.00166 * 18 16 15 20 20 H 1.48499 * 109.46531 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47127 * 299.99447 * 18 16 15 22 22 C 1.39343 * 119.75533 * 359.96212 * 8 7 6 23 23 C 1.38018 * 119.88018 * 0.05819 * 22 8 7 24 24 H 1.08997 * 109.47396 * 299.99996 * 1 2 3 25 25 H 1.09003 * 109.47219 * 59.99914 * 1 2 3 26 26 H 1.09003 * 109.47116 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47308 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47242 * 300.00072 * 3 2 1 29 29 H 1.09000 * 109.47739 * 60.00120 * 3 2 1 30 30 H 1.09003 * 109.47132 * 300.00009 * 4 2 1 31 31 H 1.09002 * 109.47479 * 59.99655 * 4 2 1 32 32 H 1.08995 * 109.47438 * 180.02562 * 4 2 1 33 33 H 1.07998 * 119.94140 * 359.96903 * 6 5 2 34 34 H 1.08001 * 120.05882 * 179.72571 * 7 6 5 35 35 H 1.07994 * 120.05427 * 359.96592 * 10 9 8 36 36 H 1.08009 * 119.94923 * 180.02562 * 11 10 9 37 37 H 1.08001 * 119.95080 * 179.97438 * 14 12 11 38 38 H 1.08994 * 109.47159 * 225.35675 * 16 15 14 39 39 H 0.96706 * 113.99993 * 299.99622 * 17 16 15 40 40 H 1.08004 * 120.05991 * 180.02562 * 22 8 7 41 41 H 1.07991 * 119.94017 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7154 -2.2440 1.4882 7 6 3.1749 -2.8998 2.6123 8 6 3.4079 -2.1856 3.7859 9 6 3.9014 -2.8853 4.9978 10 6 3.1840 -3.9560 5.5271 11 6 3.6469 -4.6042 6.6540 12 6 4.8226 -4.1914 7.2592 13 9 5.2719 -4.8285 8.3625 14 6 5.5387 -3.1263 6.7366 15 6 5.0862 -2.4763 5.6072 16 6 5.8692 -1.3223 5.0359 17 8 6.5471 -1.7465 3.8515 18 14 7.1168 -0.7373 6.2897 19 1 8.0441 -1.8488 6.6212 20 1 7.8888 0.3994 5.7265 21 1 6.4124 -0.2964 7.5204 22 6 3.1760 -0.8120 3.8172 23 6 2.7161 -0.1664 2.6873 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.5740 1.7565 -0.0005 28 1 2.1206 2.2703 -0.8900 29 1 2.1207 2.2703 0.8900 30 1 2.1207 -1.9059 -1.5211 31 1 2.1206 -0.3644 -2.4111 32 1 3.5740 -0.8786 -1.5209 33 1 2.5340 -2.7967 0.5782 34 1 3.3497 -3.9652 2.5835 35 1 2.2670 -4.2781 5.0563 36 1 3.0916 -5.4346 7.0648 37 1 6.4547 -2.8075 7.2117 38 1 5.1887 -0.5065 4.7925 39 1 7.1706 -2.4719 3.9937 40 1 3.3553 -0.2535 4.7241 41 1 2.5356 0.8980 2.7105 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_13286464.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:20:15 Heat of formation + Delta-G solvation = -64.382177 kcal Electronic energy + Delta-G solvation = -22254.606803 eV Core-core repulsion = 18944.230533 eV Total energy + Delta-G solvation = -3310.376270 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 304.116 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.02785 -41.13925 -39.17854 -37.57601 -33.44739 -32.95132 -31.77667 -29.79807 -29.16893 -28.27140 -28.24204 -27.08044 -24.43978 -23.30219 -22.87441 -21.89141 -19.06254 -18.11975 -17.79783 -17.34786 -16.77539 -16.67297 -16.21967 -15.82980 -15.63373 -15.34703 -14.92460 -14.72042 -14.40774 -14.23915 -14.04332 -13.91877 -13.73564 -13.70379 -13.53880 -13.20359 -13.09576 -13.07657 -12.93934 -12.90125 -12.61859 -12.24981 -12.00920 -11.92716 -11.76451 -10.89082 -10.72765 -10.70844 -10.46143 -10.22136 -10.02851 -9.70747 -9.18482 -0.26186 0.00486 0.51688 0.61583 1.06575 1.34616 1.44773 1.82779 1.90151 2.05893 2.12957 2.36049 2.70971 3.00101 3.05912 3.41183 3.54353 3.58680 3.74424 4.02359 4.08410 4.18638 4.23401 4.46982 4.58368 4.64278 4.74762 4.76770 4.87128 4.87351 4.91035 4.91490 4.92350 4.92599 4.94401 4.98943 5.12917 5.20475 5.30485 5.48864 5.61553 5.63616 5.69149 5.70189 5.74491 5.74815 6.20774 6.63883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.124 2.876 3 C -0.462 4.462 4 C -0.463 4.463 5 C -0.379 4.379 6 C -0.097 4.097 7 C -0.125 4.125 8 C -0.041 4.041 9 C -0.038 4.038 10 C -0.077 4.077 11 C -0.143 4.143 12 C 0.088 3.912 13 F -0.146 7.146 14 C -0.166 4.166 15 C -0.082 4.082 16 C -0.082 4.082 17 O -0.541 6.541 18 Si 0.968 3.032 19 H -0.248 1.248 20 H -0.265 1.265 21 H -0.255 1.255 22 C -0.131 4.131 23 C -0.097 4.097 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.136 0.864 34 H 0.124 0.876 35 H 0.153 0.847 36 H 0.157 0.843 37 H 0.143 0.857 38 H 0.125 0.875 39 H 0.386 0.614 40 H 0.127 0.873 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.682 0.647 -2.093 2.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.311 2.689 3 C -0.569 4.569 4 C -0.570 4.570 5 C -0.418 4.418 6 C -0.114 4.114 7 C -0.143 4.143 8 C -0.041 4.041 9 C -0.038 4.038 10 C -0.095 4.095 11 C -0.162 4.162 12 C 0.069 3.931 13 F -0.125 7.125 14 C -0.184 4.184 15 C -0.083 4.083 16 C -0.192 4.192 17 O -0.347 6.347 18 Si 0.791 3.209 19 H -0.172 1.172 20 H -0.190 1.190 21 H -0.179 1.179 22 C -0.149 4.149 23 C -0.115 4.115 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.154 0.846 34 H 0.142 0.858 35 H 0.171 0.829 36 H 0.175 0.825 37 H 0.161 0.839 38 H 0.143 0.857 39 H 0.235 0.765 40 H 0.145 0.855 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.393 1.336 -1.638 2.531 hybrid contribution 0.278 -0.969 0.603 1.175 sum -1.115 0.367 -1.035 1.565 Atomic orbital electron populations 1.26276 1.21557 1.04449 1.04509 0.77197 0.65207 0.64641 0.61865 1.26284 1.06362 1.19488 1.04812 1.26288 1.06337 1.08495 1.15842 1.27903 1.03361 0.99562 1.10995 1.21274 0.97034 0.95119 0.98022 1.21388 1.00067 1.00020 0.92802 1.18663 0.99425 0.93592 0.92462 1.18874 0.94089 0.95932 0.94902 1.21344 0.99947 0.93597 0.94576 1.21375 0.95376 1.02290 0.97118 1.17874 0.95527 0.94093 0.85647 1.91506 1.89078 1.80874 1.51000 1.21147 1.01985 0.97212 0.98084 1.20233 0.95685 0.97996 0.94341 1.25168 1.01094 0.97434 0.95494 1.86551 1.59610 1.57292 1.31249 0.85432 0.78348 0.80231 0.76853 1.17226 1.18964 1.17890 1.21423 1.00571 0.93548 0.99385 1.21285 0.97057 1.00572 0.92582 0.91368 0.90803 0.91373 0.91404 0.90779 0.90867 0.90930 0.90772 0.91443 0.84616 0.85780 0.82903 0.82533 0.83936 0.85745 0.76504 0.85542 0.84442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.63 8.65 113.37 0.98 2.61 16 2 Si 1.12 -6.00 12.31 68.60 0.84 -5.16 16 3 C -0.46 1.76 8.52 113.37 0.97 2.73 16 4 C -0.46 1.71 8.52 113.37 0.97 2.68 16 5 C -0.38 0.20 4.60 22.31 0.10 0.30 16 6 C -0.10 -0.06 9.28 22.24 0.21 0.15 16 7 C -0.12 -0.28 9.63 22.48 0.22 -0.06 16 8 C -0.04 -0.12 4.85 -20.04 -0.10 -0.22 16 9 C -0.04 -0.09 5.40 -20.04 -0.11 -0.19 16 10 C -0.08 -0.01 9.62 22.48 0.22 0.20 16 11 C -0.14 -0.09 10.01 22.28 0.22 0.13 16 12 C 0.09 0.33 7.30 22.42 0.16 0.49 16 13 F -0.15 -0.92 17.26 44.97 0.78 -0.14 16 14 C -0.17 -0.41 8.63 22.28 0.19 -0.21 16 15 C -0.08 -0.15 5.26 -19.66 -0.10 -0.26 16 16 C -0.08 -0.04 2.07 71.24 0.15 0.11 16 17 O -0.54 -0.86 12.82 -148.98 -1.91 -2.77 16 18 Si 0.97 -0.15 25.48 68.60 1.75 1.59 16 19 H -0.25 0.12 6.74 99.48 0.67 0.80 16 20 H -0.27 -0.68 7.11 99.48 0.71 0.03 16 21 H -0.26 -0.30 7.11 99.48 0.71 0.41 16 22 C -0.13 -0.28 7.95 22.48 0.18 -0.10 16 23 C -0.10 -0.05 9.28 22.24 0.21 0.16 16 24 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 25 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 26 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 27 H 0.07 -0.18 7.96 -2.38 -0.02 -0.20 16 28 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 29 H 0.07 -0.32 7.67 -2.39 -0.02 -0.34 16 30 H 0.07 -0.30 7.67 -2.39 -0.02 -0.32 16 31 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 32 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 33 H 0.14 -0.45 7.40 -2.91 -0.02 -0.47 16 34 H 0.12 0.01 8.06 -2.91 -0.02 -0.02 16 35 H 0.15 -0.51 8.06 -2.91 -0.02 -0.53 16 36 H 0.16 -0.49 8.06 -2.91 -0.02 -0.52 16 37 H 0.14 0.07 4.88 -2.91 -0.01 0.05 16 38 H 0.12 -0.01 4.94 -2.39 -0.01 -0.02 16 39 H 0.39 -1.82 8.70 -74.05 -0.64 -2.46 16 40 H 0.13 -0.06 7.01 -2.91 -0.02 -0.08 16 41 H 0.14 -0.51 7.40 -2.91 -0.02 -0.53 16 Total: 0.00 -10.80 343.99 7.03 -3.77 By element: Atomic # 1 Polarization: -6.91 SS G_CDS: 1.11 Total: -5.80 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 4.46 Total: 8.50 kcal Atomic # 8 Polarization: -0.86 SS G_CDS: -1.91 Total: -2.77 kcal Atomic # 9 Polarization: -0.92 SS G_CDS: 0.78 Total: -0.14 kcal Atomic # 14 Polarization: -6.16 SS G_CDS: 2.59 Total: -3.57 kcal Total: -10.80 7.03 -3.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_13286464.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.610 kcal (2) G-P(sol) polarization free energy of solvation -10.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -3.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds