Wall clock time and date at job start Mon Mar 8 2021 09:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86295 * 109.47288 * 2 1 4 4 C 1.86299 * 109.46826 * 240.00117 * 2 1 3 5 5 C 1.86801 * 109.47150 * 120.00068 * 2 1 3 6 6 C 1.38376 * 119.84587 * 89.99856 * 5 2 1 7 7 C 1.37939 * 120.15147 * 179.97438 * 6 5 2 8 8 C 1.39643 * 119.84199 * 0.02562 * 7 6 5 9 9 C 1.47718 * 120.14859 * 180.02562 * 8 7 6 10 10 C 1.36594 * 126.59063 * 54.34309 * 9 8 7 11 11 C 1.50700 * 125.75828 * 359.97438 * 10 9 8 12 12 O 1.42898 * 109.47181 * 37.61722 * 11 10 9 13 13 Si 1.86295 * 109.47709 * 157.62046 * 11 10 9 14 14 H 1.48498 * 109.47009 * 300.00283 * 13 11 10 15 15 H 1.48509 * 109.46922 * 59.99825 * 13 11 10 16 16 H 1.48498 * 109.47415 * 180.02562 * 13 11 10 17 17 N 1.33045 * 108.49026 * 180.24220 * 10 9 8 18 18 C 1.32761 * 109.49126 * 359.56418 * 17 10 9 19 19 C 1.40833 * 132.14958 * 180.12779 * 18 17 10 20 20 C 1.36107 * 119.35808 * 180.33633 * 19 18 17 21 21 C 1.40416 * 119.69519 * 359.97438 * 20 19 18 22 22 C 1.35035 * 120.24723 * 359.97438 * 21 20 19 23 23 N 1.36370 * 120.60564 * 0.03559 * 22 21 20 24 24 C 1.39642 * 119.70200 * 0.27306 * 8 7 6 25 25 C 1.37942 * 119.84607 * 359.45003 * 24 8 7 26 26 H 1.09004 * 109.47057 * 300.00233 * 1 2 3 27 27 H 1.09002 * 109.46844 * 59.99860 * 1 2 3 28 28 H 1.09001 * 109.47354 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47110 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47203 * 300.00414 * 3 2 1 31 31 H 1.09004 * 109.47262 * 59.99892 * 3 2 1 32 32 H 1.09000 * 109.47516 * 299.99763 * 4 2 1 33 33 H 1.08992 * 109.47466 * 60.00220 * 4 2 1 34 34 H 1.09000 * 109.47047 * 180.02562 * 4 2 1 35 35 H 1.08000 * 119.92405 * 0.02562 * 6 5 2 36 36 H 1.07990 * 120.07715 * 180.02562 * 7 6 5 37 37 H 1.08999 * 109.47233 * 277.62590 * 11 10 9 38 38 H 0.96708 * 113.99837 * 56.84459 * 12 11 10 39 39 H 1.08008 * 120.32204 * 0.30897 * 19 18 17 40 40 H 1.07995 * 120.15120 * 179.97438 * 20 19 18 41 41 H 1.07994 * 119.87703 * 180.02562 * 21 20 19 42 42 H 1.08001 * 119.69318 * 180.02562 * 22 21 20 43 43 H 1.08004 * 120.07890 * 179.72737 * 24 8 7 44 44 H 1.07998 * 119.92576 * 180.27868 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4857 -0.8806 1.5252 6 6 2.7152 -2.2447 1.4874 7 6 3.1755 -2.9012 2.6098 8 6 3.4093 -2.1861 3.7862 9 6 3.9028 -2.8822 4.9920 10 6 5.0150 -3.6704 5.0793 11 6 5.9622 -3.9851 3.9501 12 8 6.1254 -2.8273 3.1287 13 14 7.6143 -4.4895 4.6476 14 1 8.1676 -3.3784 5.4628 15 1 7.4446 -5.6928 5.5013 16 1 8.5478 -4.7990 3.5349 17 7 5.1179 -4.1182 6.3278 18 6 4.1153 -3.6391 7.0543 19 6 3.7675 -3.8024 8.4092 20 6 2.6557 -3.1834 8.8921 21 6 1.8727 -2.3924 8.0359 22 6 2.2198 -2.2447 6.7393 23 7 3.3314 -2.8599 6.2437 24 6 3.1696 -0.8108 3.8191 25 6 2.7148 -0.1659 2.6877 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.5740 1.7564 -0.0005 30 1 2.1207 2.2703 -0.8900 31 1 2.1207 2.2703 0.8900 32 1 2.1206 -1.9059 -1.5212 33 1 2.1207 -0.3644 -2.4111 34 1 3.5739 -0.8786 -1.5210 35 1 2.5344 -2.7964 0.5767 36 1 3.3546 -3.9657 2.5788 37 1 5.5561 -4.8006 3.3518 38 1 6.4382 -2.0468 3.6066 39 1 4.3771 -4.4132 9.0588 40 1 2.3769 -3.3002 9.9289 41 1 0.9902 -1.8996 8.4160 42 1 1.6114 -1.6339 6.0889 43 1 3.3442 -0.2525 4.7270 44 1 2.5333 0.8984 2.7104 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_13286520.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:20:22 Heat of formation + Delta-G solvation = 35.060157 kcal Electronic energy + Delta-G solvation = -25177.486640 eV Core-core repulsion = 21798.034767 eV Total energy + Delta-G solvation = -3379.451873 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.132 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.86863 -39.81664 -38.77715 -37.30246 -34.86974 -32.60086 -31.85672 -31.43902 -29.63318 -29.02429 -28.42788 -28.41035 -27.32512 -24.55533 -23.95276 -23.25230 -22.46308 -21.47550 -18.85109 -18.40469 -17.52196 -17.32066 -17.14963 -16.68149 -16.00860 -15.77552 -15.70073 -15.54225 -15.38795 -14.63803 -14.36433 -14.33039 -14.17609 -14.08052 -13.84862 -13.63212 -13.44807 -13.32817 -13.25250 -13.19914 -13.09576 -12.85122 -12.69712 -12.46452 -12.13798 -11.95966 -11.85594 -11.82598 -11.25500 -11.04130 -10.89392 -10.82944 -10.50695 -9.79601 -9.73771 -9.58501 -8.60831 -0.30563 -0.09745 0.46878 0.60710 1.28000 1.46049 1.70515 1.72993 1.75845 1.82811 1.86080 2.00827 2.21492 2.49824 2.55755 2.98722 3.04214 3.32649 3.54595 3.55357 3.78449 3.93741 4.01745 4.06102 4.12610 4.31261 4.47761 4.54052 4.63235 4.65897 4.70137 4.72045 4.74932 4.75407 4.76750 4.78016 4.84016 4.97040 5.00661 5.11945 5.20056 5.34379 5.41052 5.44620 5.51741 5.53714 5.59484 5.64992 5.66847 6.01145 6.13494 6.53946 6.83490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.059 2.941 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.363 4.363 6 C -0.084 4.084 7 C -0.085 4.085 8 C 0.003 3.997 9 C -0.010 4.010 10 C 0.044 3.956 11 C -0.043 4.043 12 O -0.529 6.529 13 Si 0.981 3.019 14 H -0.258 1.258 15 H -0.245 1.245 16 H -0.260 1.260 17 N -0.487 5.487 18 C 0.233 3.767 19 C -0.080 4.080 20 C -0.097 4.097 21 C -0.139 4.139 22 C 0.058 3.942 23 N -0.353 5.353 24 C -0.123 4.123 25 C -0.087 4.087 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.375 0.625 39 H 0.154 0.846 40 H 0.146 0.854 41 H 0.153 0.847 42 H 0.162 0.838 43 H 0.112 0.888 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.563 2.488 0.651 4.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.251 2.749 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.405 4.405 6 C -0.102 4.102 7 C -0.104 4.104 8 C 0.002 3.998 9 C -0.122 4.122 10 C -0.090 4.090 11 C -0.155 4.155 12 O -0.333 6.333 13 Si 0.802 3.198 14 H -0.182 1.182 15 H -0.168 1.168 16 H -0.184 1.184 17 N -0.208 5.208 18 C -0.009 4.009 19 C -0.101 4.101 20 C -0.121 4.121 21 C -0.160 4.160 22 C -0.065 4.065 23 N -0.023 5.023 24 C -0.142 4.142 25 C -0.104 4.104 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.222 0.778 39 H 0.172 0.828 40 H 0.164 0.836 41 H 0.171 0.829 42 H 0.180 0.820 43 H 0.131 0.869 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.341 1.305 0.819 2.803 hybrid contribution -0.991 0.961 0.361 1.427 sum -3.333 2.266 1.180 4.199 Atomic orbital electron populations 1.26135 1.20587 1.04534 1.04420 0.78182 0.66717 0.66113 0.63906 1.26138 1.06537 1.18578 1.04470 1.26135 1.06597 1.08022 1.14990 1.27418 1.03651 0.99450 1.10016 1.20972 0.97181 0.94521 0.97484 1.21132 0.97652 0.99506 0.92114 1.17644 0.99630 0.92310 0.90262 1.19253 0.98607 1.10109 0.84277 1.21461 0.95928 0.97979 0.93637 1.24372 1.06611 0.92436 0.92037 1.86534 1.89564 1.20879 1.36294 0.85163 0.74005 0.81935 0.78661 1.18207 1.16844 1.18430 1.70279 1.21924 1.25825 1.02778 1.20797 0.90626 0.96112 0.93409 1.20349 0.98164 1.01264 0.90275 1.21128 0.93982 0.96121 1.00907 1.20907 1.01917 1.01327 0.91820 1.21677 0.89075 0.99159 0.96553 1.42809 1.18174 1.31939 1.09422 1.21246 1.00867 0.93289 0.98781 1.20917 0.97567 0.99483 0.92481 0.91259 0.91066 0.91190 0.90990 0.91006 0.91266 0.91175 0.91037 0.90932 0.85921 0.86341 0.86006 0.77774 0.82835 0.83650 0.82901 0.82036 0.86943 0.86101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.73 8.65 101.05 0.87 1.60 16 2 Si 1.06 -2.68 12.30 -169.99 -2.09 -4.77 16 3 C -0.45 0.81 8.52 101.05 0.86 1.68 16 4 C -0.45 0.73 8.52 101.05 0.86 1.59 16 5 C -0.36 0.11 4.60 -39.48 -0.18 -0.07 16 6 C -0.08 -0.04 9.27 -39.64 -0.37 -0.41 16 7 C -0.09 -0.15 8.66 -39.17 -0.34 -0.49 16 8 C 0.00 0.01 4.53 -104.98 -0.48 -0.47 16 9 C -0.01 -0.03 6.36 -81.99 -0.52 -0.55 16 10 C 0.04 0.16 6.08 -82.66 -0.50 -0.34 16 11 C -0.04 -0.08 2.60 36.01 0.09 0.02 16 12 O -0.53 -0.78 10.90 -35.23 -0.38 -1.16 16 13 Si 0.98 2.24 27.50 -169.99 -4.67 -2.44 16 14 H -0.26 -0.87 7.11 56.52 0.40 -0.47 16 15 H -0.25 -0.93 7.11 56.52 0.40 -0.53 16 16 H -0.26 -0.68 7.11 56.52 0.40 -0.27 16 17 N -0.49 -2.45 9.76 -8.75 -0.09 -2.54 16 18 C 0.23 0.85 7.80 -155.92 -1.22 -0.37 16 19 C -0.08 -0.07 10.10 -39.37 -0.40 -0.46 16 20 C -0.10 0.13 10.07 -39.53 -0.40 -0.27 16 21 C -0.14 0.23 9.99 -39.90 -0.40 -0.17 16 22 C 0.06 0.00 10.80 -16.67 -0.18 -0.18 16 23 N -0.35 -0.94 2.96 -58.89 -0.17 -1.12 16 24 C -0.12 -0.12 9.62 -39.17 -0.38 -0.50 16 25 C -0.09 0.00 9.27 -39.64 -0.37 -0.37 16 26 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 27 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 28 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 29 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 31 H 0.07 -0.14 7.67 -51.93 -0.40 -0.54 16 32 H 0.07 -0.12 7.67 -51.93 -0.40 -0.52 16 33 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 34 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 35 H 0.12 -0.15 7.39 -52.49 -0.39 -0.54 16 36 H 0.12 0.16 8.06 -52.49 -0.42 -0.26 16 37 H 0.12 0.07 7.96 -51.93 -0.41 -0.34 16 38 H 0.38 -0.25 8.74 45.56 0.40 0.15 16 39 H 0.15 -0.12 8.06 -52.48 -0.42 -0.55 16 40 H 0.15 -0.58 8.06 -52.49 -0.42 -1.00 16 41 H 0.15 -0.68 8.06 -52.49 -0.42 -1.10 16 42 H 0.16 -0.29 7.94 -52.49 -0.42 -0.70 16 43 H 0.11 0.03 8.06 -52.48 -0.42 -0.39 16 44 H 0.12 -0.22 7.39 -52.49 -0.39 -0.61 16 LS Contribution 370.99 15.07 5.59 5.59 Total: 0.00 -6.87 370.99 -10.66 -17.53 By element: Atomic # 1 Polarization: -5.52 SS G_CDS: -5.81 Total: -11.33 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -3.03 Total: 0.24 kcal Atomic # 7 Polarization: -3.39 SS G_CDS: -0.26 Total: -3.65 kcal Atomic # 8 Polarization: -0.78 SS G_CDS: -0.38 Total: -1.16 kcal Atomic # 14 Polarization: -0.44 SS G_CDS: -6.77 Total: -7.20 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -6.87 -10.66 -17.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_13286520.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.588 kcal (2) G-P(sol) polarization free energy of solvation -6.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds