Wall clock time and date at job start Mon Mar 8 2021 09:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86295 * 109.47288 * 2 1 4 4 C 1.86299 * 109.46826 * 240.00117 * 2 1 3 5 5 C 1.86801 * 109.47150 * 120.00068 * 2 1 3 6 6 C 1.38376 * 119.84587 * 89.99856 * 5 2 1 7 7 C 1.37939 * 120.15147 * 179.97438 * 6 5 2 8 8 C 1.39643 * 119.84199 * 0.02562 * 7 6 5 9 9 C 1.47718 * 120.14859 * 180.02562 * 8 7 6 10 10 C 1.36594 * 126.59063 * 54.34309 * 9 8 7 11 11 C 1.50700 * 125.75828 * 359.97438 * 10 9 8 12 12 O 1.42898 * 109.47181 * 37.61722 * 11 10 9 13 13 Si 1.86295 * 109.47709 * 157.62046 * 11 10 9 14 14 H 1.48498 * 109.47009 * 300.00283 * 13 11 10 15 15 H 1.48509 * 109.46922 * 59.99825 * 13 11 10 16 16 H 1.48498 * 109.47415 * 180.02562 * 13 11 10 17 17 N 1.33045 * 108.49026 * 180.24220 * 10 9 8 18 18 C 1.32761 * 109.49126 * 359.56418 * 17 10 9 19 19 C 1.40833 * 132.14958 * 180.12779 * 18 17 10 20 20 C 1.36107 * 119.35808 * 180.33633 * 19 18 17 21 21 C 1.40416 * 119.69519 * 359.97438 * 20 19 18 22 22 C 1.35035 * 120.24723 * 359.97438 * 21 20 19 23 23 N 1.36370 * 120.60564 * 0.03559 * 22 21 20 24 24 C 1.39642 * 119.70200 * 0.27306 * 8 7 6 25 25 C 1.37942 * 119.84607 * 359.45003 * 24 8 7 26 26 H 1.09004 * 109.47057 * 300.00233 * 1 2 3 27 27 H 1.09002 * 109.46844 * 59.99860 * 1 2 3 28 28 H 1.09001 * 109.47354 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47110 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47203 * 300.00414 * 3 2 1 31 31 H 1.09004 * 109.47262 * 59.99892 * 3 2 1 32 32 H 1.09000 * 109.47516 * 299.99763 * 4 2 1 33 33 H 1.08992 * 109.47466 * 60.00220 * 4 2 1 34 34 H 1.09000 * 109.47047 * 180.02562 * 4 2 1 35 35 H 1.08000 * 119.92405 * 0.02562 * 6 5 2 36 36 H 1.07990 * 120.07715 * 180.02562 * 7 6 5 37 37 H 1.08999 * 109.47233 * 277.62590 * 11 10 9 38 38 H 0.96708 * 113.99837 * 56.84459 * 12 11 10 39 39 H 1.08008 * 120.32204 * 0.30897 * 19 18 17 40 40 H 1.07995 * 120.15120 * 179.97438 * 20 19 18 41 41 H 1.07994 * 119.87703 * 180.02562 * 21 20 19 42 42 H 1.08001 * 119.69318 * 180.02562 * 22 21 20 43 43 H 1.08004 * 120.07890 * 179.72737 * 24 8 7 44 44 H 1.07998 * 119.92576 * 180.27868 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4857 -0.8806 1.5252 6 6 2.7152 -2.2447 1.4874 7 6 3.1755 -2.9012 2.6098 8 6 3.4093 -2.1861 3.7862 9 6 3.9028 -2.8822 4.9920 10 6 5.0150 -3.6704 5.0793 11 6 5.9622 -3.9851 3.9501 12 8 6.1254 -2.8273 3.1287 13 14 7.6143 -4.4895 4.6476 14 1 8.1676 -3.3784 5.4628 15 1 7.4446 -5.6928 5.5013 16 1 8.5478 -4.7990 3.5349 17 7 5.1179 -4.1182 6.3278 18 6 4.1153 -3.6391 7.0543 19 6 3.7675 -3.8024 8.4092 20 6 2.6557 -3.1834 8.8921 21 6 1.8727 -2.3924 8.0359 22 6 2.2198 -2.2447 6.7393 23 7 3.3314 -2.8599 6.2437 24 6 3.1696 -0.8108 3.8191 25 6 2.7148 -0.1659 2.6877 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.5740 1.7564 -0.0005 30 1 2.1207 2.2703 -0.8900 31 1 2.1207 2.2703 0.8900 32 1 2.1206 -1.9059 -1.5212 33 1 2.1207 -0.3644 -2.4111 34 1 3.5739 -0.8786 -1.5210 35 1 2.5344 -2.7964 0.5767 36 1 3.3546 -3.9657 2.5788 37 1 5.5561 -4.8006 3.3518 38 1 6.4382 -2.0468 3.6066 39 1 4.3771 -4.4132 9.0588 40 1 2.3769 -3.3002 9.9289 41 1 0.9902 -1.8996 8.4160 42 1 1.6114 -1.6339 6.0889 43 1 3.3442 -0.2525 4.7270 44 1 2.5333 0.8984 2.7104 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_13286520.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:20:21 Heat of formation + Delta-G solvation = 44.924281 kcal Electronic energy + Delta-G solvation = -25177.058899 eV Core-core repulsion = 21798.034767 eV Total energy + Delta-G solvation = -3379.024132 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.132 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.95611 -39.82844 -38.81757 -37.38539 -34.92306 -32.63134 -31.86149 -31.45228 -29.51841 -29.04315 -28.25933 -28.24207 -27.40036 -24.56055 -23.99377 -23.27117 -22.52275 -21.55981 -18.88148 -18.47560 -17.56048 -17.34128 -17.26440 -16.67221 -15.99866 -15.86452 -15.74906 -15.60682 -15.44010 -14.60955 -14.53735 -14.32862 -14.02616 -13.95471 -13.70340 -13.56187 -13.35614 -13.24202 -13.08650 -13.07067 -12.93857 -12.92105 -12.64377 -12.57830 -12.22519 -12.17251 -12.05097 -11.87858 -11.41166 -10.93493 -10.77192 -10.72661 -10.60004 -9.85615 -9.77587 -9.62057 -8.68045 -0.29798 -0.12362 0.44925 0.58217 1.10018 1.38853 1.46138 1.59843 1.66072 1.88398 1.98035 2.05677 2.16117 2.46120 2.70041 2.97720 2.98110 3.26728 3.51064 3.57190 3.84274 3.94687 4.03450 4.11856 4.12631 4.28781 4.46898 4.56402 4.61958 4.67767 4.85461 4.87308 4.87646 4.91545 4.92517 4.92918 4.93306 4.96795 5.04374 5.17454 5.20012 5.30937 5.42560 5.54767 5.59424 5.62163 5.64203 5.70562 5.74141 5.97458 6.13787 6.48671 6.71320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.128 2.872 3 C -0.462 4.462 4 C -0.465 4.465 5 C -0.372 4.372 6 C -0.092 4.092 7 C -0.101 4.101 8 C -0.005 4.005 9 C -0.021 4.021 10 C 0.027 3.973 11 C -0.036 4.036 12 O -0.532 6.532 13 Si 1.013 2.987 14 H -0.276 1.276 15 H -0.271 1.271 16 H -0.261 1.261 17 N -0.526 5.526 18 C 0.213 3.787 19 C -0.107 4.107 20 C -0.081 4.081 21 C -0.129 4.129 22 C 0.038 3.962 23 N -0.358 5.358 24 C -0.129 4.129 25 C -0.091 4.091 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.137 0.863 36 H 0.113 0.887 37 H 0.131 0.869 38 H 0.383 0.617 39 H 0.162 0.838 40 H 0.178 0.822 41 H 0.188 0.812 42 H 0.176 0.824 43 H 0.116 0.884 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.152 3.764 0.775 6.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.315 2.685 3 C -0.569 4.569 4 C -0.572 4.572 5 C -0.412 4.412 6 C -0.110 4.110 7 C -0.120 4.120 8 C -0.007 4.007 9 C -0.133 4.133 10 C -0.107 4.107 11 C -0.147 4.147 12 O -0.337 6.337 13 Si 0.838 3.162 14 H -0.201 1.201 15 H -0.195 1.195 16 H -0.185 1.185 17 N -0.248 5.248 18 C -0.029 4.029 19 C -0.127 4.127 20 C -0.104 4.104 21 C -0.149 4.149 22 C -0.084 4.084 23 N -0.028 5.028 24 C -0.148 4.148 25 C -0.109 4.109 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.155 0.845 36 H 0.131 0.869 37 H 0.148 0.852 38 H 0.231 0.769 39 H 0.179 0.821 40 H 0.195 0.805 41 H 0.205 0.795 42 H 0.194 0.806 43 H 0.134 0.866 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.927 2.582 0.941 4.793 hybrid contribution -0.569 0.592 0.416 0.920 sum -4.495 3.174 1.357 5.668 Atomic orbital electron populations 1.26281 1.21530 1.04429 1.04600 0.77151 0.65160 0.64595 0.61617 1.26273 1.06418 1.19325 1.04867 1.26313 1.06418 1.08474 1.15954 1.27987 1.02858 0.99280 1.11041 1.21231 0.96978 0.95171 0.97637 1.21230 0.98550 0.99507 0.92702 1.17675 1.00287 0.92764 0.89944 1.19433 0.98677 1.10310 0.84925 1.21687 0.96725 0.98558 0.93682 1.24300 1.05822 0.92778 0.91839 1.86506 1.89587 1.21158 1.36454 0.84715 0.74156 0.79862 0.77468 1.20110 1.19538 1.18540 1.70218 1.23433 1.27482 1.03654 1.21264 0.90754 0.96397 0.94483 1.20635 0.99721 1.02880 0.89468 1.21579 0.92414 0.94088 1.02338 1.21408 1.02383 1.00195 0.90936 1.22175 0.88754 0.99668 0.97763 1.42945 1.18700 1.31959 1.09175 1.21350 1.01073 0.92947 0.99416 1.21222 0.96986 1.00531 0.92173 0.91229 0.90756 0.91463 0.91331 0.90753 0.90787 0.91040 0.90767 0.91390 0.84503 0.86877 0.85168 0.76883 0.82092 0.80456 0.79468 0.80640 0.86625 0.84130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.94 8.65 113.37 0.98 2.92 16 2 Si 1.13 -6.74 12.30 68.60 0.84 -5.90 16 3 C -0.46 2.18 8.52 113.37 0.97 3.15 16 4 C -0.46 1.77 8.52 113.37 0.97 2.73 16 5 C -0.37 0.39 4.60 22.33 0.10 0.49 16 6 C -0.09 -0.12 9.27 22.23 0.21 0.09 16 7 C -0.10 -0.47 8.66 22.54 0.20 -0.27 16 8 C -0.01 -0.03 4.53 -20.09 -0.09 -0.12 16 9 C -0.02 -0.17 6.36 40.36 0.26 0.09 16 10 C 0.03 0.26 6.08 41.99 0.26 0.52 16 11 C -0.04 -0.20 2.60 71.24 0.19 -0.01 16 12 O -0.53 -2.33 10.90 -148.98 -1.62 -3.95 16 13 Si 1.01 6.82 27.50 68.60 1.89 8.71 16 14 H -0.28 -2.56 7.11 99.48 0.71 -1.85 16 15 H -0.27 -2.87 7.11 99.48 0.71 -2.16 16 16 H -0.26 -1.68 7.11 99.48 0.71 -0.97 16 17 N -0.53 -6.66 9.76 -181.61 -1.77 -8.43 16 18 C 0.21 1.92 7.80 134.03 1.05 2.97 16 19 C -0.11 -0.24 10.10 22.41 0.23 -0.02 16 20 C -0.08 0.32 10.07 22.30 0.22 0.55 16 21 C -0.13 0.64 9.99 22.06 0.22 0.86 16 22 C 0.04 -0.01 10.80 83.25 0.90 0.89 16 23 N -0.36 -2.34 2.96 -340.24 -1.01 -3.34 16 24 C -0.13 -0.30 9.62 22.54 0.22 -0.09 16 25 C -0.09 0.04 9.27 22.23 0.21 0.24 16 26 H 0.07 -0.28 7.96 -2.38 -0.02 -0.30 16 27 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 28 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 29 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 30 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 31 H 0.07 -0.41 7.67 -2.38 -0.02 -0.43 16 32 H 0.07 -0.29 7.67 -2.39 -0.02 -0.30 16 33 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 34 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 35 H 0.14 -0.33 7.39 -2.91 -0.02 -0.36 16 36 H 0.11 0.53 8.06 -2.92 -0.02 0.51 16 37 H 0.13 0.40 7.96 -2.39 -0.02 0.39 16 38 H 0.38 0.11 8.74 -74.05 -0.65 -0.54 16 39 H 0.16 -0.08 8.06 -2.91 -0.02 -0.11 16 40 H 0.18 -1.91 8.06 -2.91 -0.02 -1.93 16 41 H 0.19 -2.28 8.06 -2.91 -0.02 -2.30 16 42 H 0.18 -0.69 7.94 -2.91 -0.02 -0.71 16 43 H 0.12 0.11 8.06 -2.91 -0.02 0.09 16 44 H 0.14 -0.69 7.39 -2.91 -0.02 -0.71 16 Total: 0.00 -17.89 370.99 6.49 -11.40 By element: Atomic # 1 Polarization: -14.57 SS G_CDS: 1.10 Total: -13.47 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 7.06 Total: 14.99 kcal Atomic # 7 Polarization: -8.99 SS G_CDS: -2.78 Total: -11.78 kcal Atomic # 8 Polarization: -2.33 SS G_CDS: -1.62 Total: -3.95 kcal Atomic # 14 Polarization: 0.08 SS G_CDS: 2.73 Total: 2.81 kcal Total: -17.89 6.49 -11.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_13286520.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.325 kcal (2) G-P(sol) polarization free energy of solvation -17.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds