Wall clock time and date at job start Mon Mar 8 2021 09:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86291 * 109.47054 * 2 1 4 4 C 1.86292 * 109.46827 * 239.99954 * 2 1 3 5 5 C 1.86799 * 109.46872 * 120.00108 * 2 1 3 6 6 C 1.38325 * 119.87659 * 90.00061 * 5 2 1 7 7 C 1.38015 * 120.11854 * 180.02562 * 6 5 2 8 8 C 1.39342 * 119.88100 * 359.97438 * 7 6 5 9 9 C 1.48375 * 120.12270 * 179.97438 * 8 7 6 10 10 C 1.39313 * 120.12421 * 129.99931 * 9 8 7 11 11 C 1.38044 * 119.88603 * 180.02562 * 10 9 8 12 12 C 1.50697 * 119.91941 * 180.02562 * 11 10 9 13 13 O 1.42897 * 109.47733 * 65.02499 * 12 11 10 14 14 Si 1.86306 * 109.47008 * 185.02685 * 12 11 10 15 15 H 1.48498 * 109.47151 * 59.99817 * 14 12 11 16 16 H 1.48492 * 109.47197 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46656 * 299.99957 * 14 12 11 18 18 C 1.38306 * 120.15045 * 0.02887 * 11 10 9 19 19 C 1.38319 * 120.25896 * 359.97438 * 18 11 10 20 20 C 1.38120 * 120.10478 * 0.26078 * 19 18 11 21 21 Cl 1.73608 * 120.07313 * 179.72409 * 20 19 18 22 22 C 1.39343 * 119.75488 * 0.27728 * 8 7 6 23 23 C 1.38024 * 119.87565 * 359.44644 * 22 8 7 24 24 H 1.09004 * 109.46647 * 300.00161 * 1 2 3 25 25 H 1.09003 * 109.47048 * 59.99894 * 1 2 3 26 26 H 1.08991 * 109.47452 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47164 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47524 * 299.99875 * 3 2 1 29 29 H 1.09004 * 109.47525 * 60.00377 * 3 2 1 30 30 H 1.09004 * 109.47370 * 299.99992 * 4 2 1 31 31 H 1.09003 * 109.47183 * 60.00234 * 4 2 1 32 32 H 1.09005 * 109.47328 * 179.97438 * 4 2 1 33 33 H 1.07995 * 119.93651 * 359.97438 * 6 5 2 34 34 H 1.08004 * 120.06172 * 179.97438 * 7 6 5 35 35 H 1.07993 * 120.05118 * 0.02562 * 10 9 8 36 36 H 1.09007 * 109.47574 * 305.01939 * 12 11 10 37 37 H 0.96705 * 113.99752 * 59.99550 * 13 12 11 38 38 H 1.07998 * 119.86929 * 179.97438 * 18 11 10 39 39 H 1.08002 * 119.94286 * 179.97438 * 19 18 11 40 40 H 1.08001 * 120.06351 * 179.72235 * 22 8 7 41 41 H 1.08000 * 119.93624 * 180.27634 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5252 6 6 2.7153 -2.2442 1.4881 7 6 3.1748 -2.8999 2.6122 8 6 3.4079 -2.1859 3.7858 9 6 3.9013 -2.8855 4.9976 10 6 5.0047 -2.3913 5.6898 11 6 5.4599 -3.0465 6.8164 12 6 6.6531 -2.5121 7.5660 13 8 6.3327 -1.2364 8.1245 14 14 7.1066 -3.6928 8.9340 15 1 7.4396 -5.0184 8.3536 16 1 8.2826 -3.1666 9.6723 17 1 5.9591 -3.8345 9.8660 18 6 4.8236 -4.1921 7.2585 19 6 3.7276 -4.6882 6.5759 20 6 3.2661 -4.0439 5.4447 21 17 1.8949 -4.6713 4.5845 22 6 3.1698 -0.8133 3.8191 23 6 2.7157 -0.1667 2.6873 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.5741 1.7564 0.0005 28 1 2.1207 2.2702 -0.8899 29 1 2.1208 2.2703 0.8900 30 1 2.1206 -1.9059 -1.5211 31 1 2.1206 -0.3644 -2.4111 32 1 3.5740 -0.8779 -1.5214 33 1 2.5339 -2.7967 0.5781 34 1 3.3534 -3.9647 2.5823 35 1 5.5029 -1.4971 5.3456 36 1 7.4953 -2.4081 6.8819 37 1 5.5905 -1.2536 8.7442 38 1 5.1838 -4.7013 8.1401 39 1 3.2348 -5.5834 6.9254 40 1 3.3444 -0.2557 4.7274 41 1 2.5351 0.8978 2.7107 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_13286578.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:20:29 Heat of formation + Delta-G solvation = -40.642412 kcal Electronic energy + Delta-G solvation = -21587.726357 eV Core-core repulsion = 18388.033704 eV Total energy + Delta-G solvation = -3199.692653 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 320.087 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.08470 -39.52621 -37.95048 -37.16185 -33.86155 -32.41076 -31.81159 -30.13593 -29.38115 -28.43501 -28.39765 -26.80827 -24.62490 -23.59162 -22.69245 -21.54622 -18.84966 -17.91630 -17.59159 -16.80827 -16.51314 -16.18414 -15.78218 -15.61029 -15.12828 -15.02453 -14.49125 -14.47400 -14.20753 -14.16544 -14.07199 -13.81616 -13.62081 -13.45504 -13.27396 -13.25521 -13.21189 -13.09061 -12.69704 -12.47553 -12.30375 -12.18826 -12.01391 -11.85258 -11.58773 -11.05423 -10.89335 -10.79584 -10.53386 -10.31688 -9.82310 -9.72569 -9.21661 -0.29940 0.05366 0.55551 0.61099 1.05116 1.11879 1.35000 1.43601 1.73169 1.83675 1.86484 1.96238 2.40393 2.56224 2.98011 3.33471 3.48575 3.52879 3.73582 3.97747 4.07675 4.16184 4.27429 4.34098 4.51973 4.58490 4.67375 4.71392 4.72455 4.75182 4.76488 4.77244 4.77417 4.79059 4.93563 5.03561 5.07473 5.20500 5.25102 5.43039 5.48137 5.51657 5.55161 5.65670 5.66670 5.67391 6.15381 6.44395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.058 2.942 3 C -0.449 4.449 4 C -0.449 4.449 5 C -0.363 4.363 6 C -0.090 4.090 7 C -0.104 4.104 8 C -0.048 4.048 9 C -0.035 4.035 10 C -0.066 4.066 11 C -0.114 4.114 12 C -0.081 4.081 13 O -0.536 6.536 14 Si 0.948 3.052 15 H -0.249 1.249 16 H -0.252 1.252 17 H -0.250 1.250 18 C -0.114 4.114 19 C -0.102 4.102 20 C -0.023 4.023 21 Cl -0.057 7.057 22 C -0.110 4.110 23 C -0.090 4.090 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.139 0.861 36 H 0.121 0.879 37 H 0.377 0.623 38 H 0.130 0.870 39 H 0.140 0.860 40 H 0.121 0.879 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.240 0.188 0.029 0.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.250 2.750 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.405 4.405 6 C -0.107 4.107 7 C -0.122 4.122 8 C -0.048 4.048 9 C -0.036 4.036 10 C -0.084 4.084 11 C -0.114 4.114 12 C -0.192 4.192 13 O -0.341 6.341 14 Si 0.771 3.229 15 H -0.172 1.172 16 H -0.175 1.175 17 H -0.174 1.174 18 C -0.132 4.132 19 C -0.121 4.121 20 C -0.050 4.050 21 Cl -0.027 7.027 22 C -0.128 4.128 23 C -0.107 4.107 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.157 0.843 36 H 0.139 0.861 37 H 0.224 0.776 38 H 0.148 0.852 39 H 0.158 0.842 40 H 0.139 0.861 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.855 -0.293 0.297 0.951 hybrid contribution -0.696 -0.179 0.084 0.723 sum 0.159 -0.472 0.381 0.627 Atomic orbital electron populations 1.26124 1.20494 1.04569 1.04463 0.78202 0.66884 0.66148 0.63796 1.26130 1.06466 1.18534 1.04551 1.26135 1.06464 1.08049 1.15064 1.27436 1.03409 0.99463 1.10194 1.20993 0.97543 0.94580 0.97629 1.21317 0.98763 0.99656 0.92429 1.18617 1.00536 0.93496 0.92158 1.18751 0.95697 0.93731 0.95431 1.21060 0.94532 0.99409 0.93433 1.20351 0.98284 0.95919 0.96888 1.25010 0.97486 0.92878 1.03794 1.86537 1.55679 1.28233 1.63667 0.85692 0.81280 0.78010 0.77940 1.17209 1.17534 1.17385 1.21073 0.95819 0.96205 1.00056 1.20956 0.96792 1.00403 0.93907 1.21066 0.92249 0.95950 0.95694 1.98393 1.41962 1.86138 1.76243 1.21254 0.99602 0.93149 0.98785 1.20995 0.97559 0.99657 0.92539 0.91171 0.91066 0.91187 0.91041 0.90979 0.91165 0.91179 0.90982 0.91046 0.85998 0.86119 0.84332 0.86149 0.77553 0.85204 0.84248 0.86086 0.85934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.51 8.65 101.05 0.87 1.38 16 2 Si 1.06 -2.33 12.31 -169.99 -2.09 -4.42 16 3 C -0.45 0.72 8.52 101.05 0.86 1.58 16 4 C -0.45 0.69 8.52 101.05 0.86 1.55 16 5 C -0.36 -0.06 4.60 -39.52 -0.18 -0.25 16 6 C -0.09 -0.08 9.28 -39.63 -0.37 -0.45 16 7 C -0.10 -0.20 8.18 -39.25 -0.32 -0.52 16 8 C -0.05 -0.10 5.11 -104.90 -0.54 -0.64 16 9 C -0.04 -0.06 5.48 -104.87 -0.57 -0.64 16 10 C -0.07 -0.05 9.15 -39.25 -0.36 -0.41 16 11 C -0.11 0.01 5.35 -104.67 -0.56 -0.55 16 12 C -0.08 0.09 2.80 36.00 0.10 0.19 16 13 O -0.54 0.22 12.83 -35.23 -0.45 -0.23 16 14 Si 0.95 -1.22 25.13 -169.99 -4.27 -5.49 16 15 H -0.25 0.17 7.11 56.52 0.40 0.57 16 16 H -0.25 -0.07 7.11 56.52 0.40 0.33 16 17 H -0.25 0.31 7.04 56.52 0.40 0.71 16 18 C -0.11 0.03 8.66 -39.53 -0.34 -0.32 16 19 C -0.10 -0.04 9.82 -39.59 -0.39 -0.43 16 20 C -0.02 -0.04 6.28 -39.17 -0.25 -0.28 16 21 Cl -0.06 -0.11 25.96 -51.86 -1.35 -1.46 16 22 C -0.11 -0.16 9.52 -39.25 -0.37 -0.53 16 23 C -0.09 -0.06 9.28 -39.63 -0.37 -0.42 16 24 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 25 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 26 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 27 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 28 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 29 H 0.07 -0.12 7.67 -51.93 -0.40 -0.52 16 30 H 0.07 -0.11 7.67 -51.93 -0.40 -0.51 16 31 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 32 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 33 H 0.12 -0.11 7.40 -52.49 -0.39 -0.50 16 34 H 0.12 0.18 7.13 -52.48 -0.37 -0.19 16 35 H 0.14 0.02 8.04 -52.49 -0.42 -0.40 16 36 H 0.12 -0.22 7.96 -51.93 -0.41 -0.64 16 37 H 0.38 -1.33 8.70 45.56 0.40 -0.94 16 38 H 0.13 -0.23 4.84 -52.49 -0.25 -0.48 16 39 H 0.14 -0.17 8.06 -52.49 -0.42 -0.59 16 40 H 0.12 0.04 8.05 -52.49 -0.42 -0.39 16 41 H 0.12 -0.16 7.40 -52.49 -0.39 -0.55 16 LS Contribution 355.35 15.07 5.36 5.36 Total: 0.00 -4.72 355.35 -9.91 -14.63 By element: Atomic # 1 Polarization: -2.46 SS G_CDS: -5.18 Total: -7.64 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -1.92 Total: -0.74 kcal Atomic # 8 Polarization: 0.22 SS G_CDS: -0.45 Total: -0.23 kcal Atomic # 14 Polarization: -3.55 SS G_CDS: -6.36 Total: -9.91 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.35 Total: -1.46 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -4.72 -9.91 -14.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_13286578.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.017 kcal (2) G-P(sol) polarization free energy of solvation -4.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds