Wall clock time and date at job start Mon Mar 8 2021 09:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86291 * 109.47054 * 2 1 4 4 C 1.86292 * 109.46827 * 239.99954 * 2 1 3 5 5 C 1.86799 * 109.46872 * 120.00108 * 2 1 3 6 6 C 1.38325 * 119.87659 * 90.00061 * 5 2 1 7 7 C 1.38015 * 120.11854 * 180.02562 * 6 5 2 8 8 C 1.39342 * 119.88100 * 359.97438 * 7 6 5 9 9 C 1.48375 * 120.12270 * 179.97438 * 8 7 6 10 10 C 1.39313 * 120.12421 * 129.99931 * 9 8 7 11 11 C 1.38044 * 119.88603 * 180.02562 * 10 9 8 12 12 C 1.50697 * 119.91941 * 180.02562 * 11 10 9 13 13 O 1.42897 * 109.47733 * 65.02499 * 12 11 10 14 14 Si 1.86306 * 109.47008 * 185.02685 * 12 11 10 15 15 H 1.48498 * 109.47151 * 59.99817 * 14 12 11 16 16 H 1.48492 * 109.47197 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46656 * 299.99957 * 14 12 11 18 18 C 1.38306 * 120.15045 * 0.02887 * 11 10 9 19 19 C 1.38319 * 120.25896 * 359.97438 * 18 11 10 20 20 C 1.38120 * 120.10478 * 0.26078 * 19 18 11 21 21 Cl 1.73608 * 120.07313 * 179.72409 * 20 19 18 22 22 C 1.39343 * 119.75488 * 0.27728 * 8 7 6 23 23 C 1.38024 * 119.87565 * 359.44644 * 22 8 7 24 24 H 1.09004 * 109.46647 * 300.00161 * 1 2 3 25 25 H 1.09003 * 109.47048 * 59.99894 * 1 2 3 26 26 H 1.08991 * 109.47452 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47164 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47524 * 299.99875 * 3 2 1 29 29 H 1.09004 * 109.47525 * 60.00377 * 3 2 1 30 30 H 1.09004 * 109.47370 * 299.99992 * 4 2 1 31 31 H 1.09003 * 109.47183 * 60.00234 * 4 2 1 32 32 H 1.09005 * 109.47328 * 179.97438 * 4 2 1 33 33 H 1.07995 * 119.93651 * 359.97438 * 6 5 2 34 34 H 1.08004 * 120.06172 * 179.97438 * 7 6 5 35 35 H 1.07993 * 120.05118 * 0.02562 * 10 9 8 36 36 H 1.09007 * 109.47574 * 305.01939 * 12 11 10 37 37 H 0.96705 * 113.99752 * 59.99550 * 13 12 11 38 38 H 1.07998 * 119.86929 * 179.97438 * 18 11 10 39 39 H 1.08002 * 119.94286 * 179.97438 * 19 18 11 40 40 H 1.08001 * 120.06351 * 179.72235 * 22 8 7 41 41 H 1.08000 * 119.93624 * 180.27634 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5252 6 6 2.7153 -2.2442 1.4881 7 6 3.1748 -2.8999 2.6122 8 6 3.4079 -2.1859 3.7858 9 6 3.9013 -2.8855 4.9976 10 6 5.0047 -2.3913 5.6898 11 6 5.4599 -3.0465 6.8164 12 6 6.6531 -2.5121 7.5660 13 8 6.3327 -1.2364 8.1245 14 14 7.1066 -3.6928 8.9340 15 1 7.4396 -5.0184 8.3536 16 1 8.2826 -3.1666 9.6723 17 1 5.9591 -3.8345 9.8660 18 6 4.8236 -4.1921 7.2585 19 6 3.7276 -4.6882 6.5759 20 6 3.2661 -4.0439 5.4447 21 17 1.8949 -4.6713 4.5845 22 6 3.1698 -0.8133 3.8191 23 6 2.7157 -0.1667 2.6873 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.5741 1.7564 0.0005 28 1 2.1207 2.2702 -0.8899 29 1 2.1208 2.2703 0.8900 30 1 2.1206 -1.9059 -1.5211 31 1 2.1206 -0.3644 -2.4111 32 1 3.5740 -0.8779 -1.5214 33 1 2.5339 -2.7967 0.5781 34 1 3.3534 -3.9647 2.5823 35 1 5.5029 -1.4971 5.3456 36 1 7.4953 -2.4081 6.8819 37 1 5.5905 -1.2536 8.7442 38 1 5.1838 -4.7013 8.1401 39 1 3.2348 -5.5834 6.9254 40 1 3.3444 -0.2557 4.7274 41 1 2.5351 0.8978 2.7107 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_13286578.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:20:29 Heat of formation + Delta-G solvation = -29.300132 kcal Electronic energy + Delta-G solvation = -21587.234519 eV Core-core repulsion = 18388.033704 eV Total energy + Delta-G solvation = -3199.200815 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 320.087 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.10273 -39.53690 -37.96415 -37.18957 -33.87582 -32.42078 -31.84137 -30.12779 -29.27778 -28.28989 -28.27016 -26.77623 -24.64491 -23.61718 -22.71319 -21.56513 -18.83541 -17.90390 -17.59502 -16.81597 -16.49759 -16.14247 -15.79318 -15.62266 -15.10801 -14.99820 -14.51218 -14.45204 -14.21380 -14.04806 -13.97511 -13.72489 -13.59686 -13.40990 -13.23615 -13.12840 -13.10713 -12.96589 -12.70506 -12.53094 -12.23497 -12.16508 -12.02298 -11.85608 -11.59050 -10.96063 -10.76657 -10.75056 -10.46758 -10.32315 -9.85697 -9.78745 -9.25764 -0.33654 0.02659 0.52786 0.55065 1.03952 1.14733 1.45097 1.51784 1.85083 1.91235 2.03580 2.09189 2.38922 2.67405 2.94518 3.38967 3.51864 3.60017 3.74203 4.00127 4.05218 4.12933 4.26428 4.36472 4.53040 4.63707 4.66816 4.77012 4.84295 4.84785 4.88586 4.89319 4.89987 4.90615 4.92952 5.01777 5.04831 5.18076 5.22580 5.43401 5.57670 5.58997 5.61820 5.64534 5.67753 5.71630 6.13009 6.66952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.124 2.876 3 C -0.460 4.460 4 C -0.462 4.462 5 C -0.375 4.375 6 C -0.101 4.101 7 C -0.118 4.118 8 C -0.061 4.061 9 C -0.046 4.046 10 C -0.073 4.073 11 C -0.111 4.111 12 C -0.080 4.080 13 O -0.550 6.550 14 Si 0.981 3.019 15 H -0.255 1.255 16 H -0.275 1.275 17 H -0.246 1.246 18 C -0.115 4.115 19 C -0.105 4.105 20 C -0.037 4.037 21 Cl -0.065 7.065 22 C -0.123 4.123 23 C -0.099 4.099 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.137 0.863 34 H 0.118 0.882 35 H 0.141 0.859 36 H 0.126 0.874 37 H 0.390 0.610 38 H 0.147 0.853 39 H 0.154 0.846 40 H 0.127 0.873 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.234 0.492 0.045 0.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.311 2.689 3 C -0.567 4.567 4 C -0.569 4.569 5 C -0.414 4.414 6 C -0.118 4.118 7 C -0.137 4.137 8 C -0.061 4.061 9 C -0.047 4.047 10 C -0.091 4.091 11 C -0.112 4.112 12 C -0.190 4.190 13 O -0.357 6.357 14 Si 0.805 3.195 15 H -0.179 1.179 16 H -0.200 1.200 17 H -0.170 1.170 18 C -0.133 4.133 19 C -0.124 4.124 20 C -0.064 4.064 21 Cl -0.036 7.036 22 C -0.141 4.141 23 C -0.116 4.116 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.154 0.846 34 H 0.136 0.864 35 H 0.158 0.842 36 H 0.144 0.856 37 H 0.239 0.761 38 H 0.164 0.836 39 H 0.172 0.828 40 H 0.145 0.855 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.833 0.002 0.326 0.894 hybrid contribution -0.679 -0.260 0.095 0.733 sum 0.154 -0.257 0.422 0.517 Atomic orbital electron populations 1.26295 1.21736 1.04345 1.04560 0.77212 0.65146 0.64826 0.61682 1.26248 1.06455 1.19122 1.04903 1.26275 1.06439 1.08404 1.15775 1.28029 1.02717 0.99396 1.11260 1.21280 0.97409 0.95214 0.97934 1.21426 0.99536 0.99704 0.92988 1.18765 1.00996 0.93923 0.92421 1.18866 0.96153 0.94007 0.95645 1.21136 0.94461 0.99686 0.93811 1.20495 0.98383 0.95782 0.96494 1.25082 0.97160 0.92787 1.03999 1.86507 1.56468 1.28606 1.64153 0.85228 0.80146 0.77032 0.77097 1.17886 1.20016 1.16971 1.21284 0.95469 0.96127 1.00423 1.21185 0.96944 1.00772 0.93450 1.21204 0.92424 0.96398 0.96342 1.98381 1.42451 1.86221 1.76563 1.21448 0.99992 0.93160 0.99504 1.21315 0.97193 1.00698 0.92424 0.91431 0.90624 0.91593 0.91203 0.90630 0.90862 0.91064 0.90621 0.91248 0.84553 0.86441 0.84159 0.85600 0.76093 0.83563 0.82807 0.85524 0.84132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.18 8.65 113.37 0.98 2.16 16 2 Si 1.12 -5.46 12.31 68.60 0.84 -4.62 16 3 C -0.46 1.81 8.52 113.37 0.97 2.78 16 4 C -0.46 1.62 8.52 113.37 0.97 2.58 16 5 C -0.37 -0.20 4.60 22.31 0.10 -0.10 16 6 C -0.10 -0.25 9.28 22.24 0.21 -0.04 16 7 C -0.12 -0.61 8.18 22.48 0.18 -0.42 16 8 C -0.06 -0.33 5.11 -20.05 -0.10 -0.44 16 9 C -0.05 -0.21 5.48 -20.02 -0.11 -0.32 16 10 C -0.07 -0.17 9.15 22.48 0.21 0.04 16 11 C -0.11 0.01 5.35 -19.90 -0.11 -0.09 16 12 C -0.08 0.20 2.80 71.24 0.20 0.39 16 13 O -0.55 0.56 12.83 -148.98 -1.91 -1.35 16 14 Si 0.98 -2.95 25.13 68.60 1.72 -1.23 16 15 H -0.25 0.50 7.11 99.48 0.71 1.20 16 16 H -0.27 -0.25 7.11 99.48 0.71 0.45 16 17 H -0.25 0.91 7.04 99.48 0.70 1.61 16 18 C -0.12 0.09 8.66 22.31 0.19 0.28 16 19 C -0.11 -0.10 9.82 22.26 0.22 0.12 16 20 C -0.04 -0.16 6.28 22.54 0.14 -0.02 16 21 Cl -0.07 -0.33 25.96 -2.72 -0.07 -0.40 16 22 C -0.12 -0.47 9.52 22.48 0.21 -0.26 16 23 C -0.10 -0.15 9.28 22.24 0.21 0.06 16 24 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 25 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 26 H 0.06 -0.10 7.96 -2.39 -0.02 -0.12 16 27 H 0.07 -0.23 7.96 -2.38 -0.02 -0.25 16 28 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 29 H 0.07 -0.32 7.67 -2.39 -0.02 -0.34 16 30 H 0.07 -0.26 7.67 -2.38 -0.02 -0.27 16 31 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 32 H 0.07 -0.20 7.96 -2.38 -0.02 -0.21 16 33 H 0.14 -0.20 7.40 -2.91 -0.02 -0.22 16 34 H 0.12 0.56 7.13 -2.91 -0.02 0.54 16 35 H 0.14 0.18 8.04 -2.91 -0.02 0.16 16 36 H 0.13 -0.48 7.96 -2.38 -0.02 -0.50 16 37 H 0.39 -2.88 8.70 -74.05 -0.64 -3.53 16 38 H 0.15 -0.67 4.84 -2.91 -0.01 -0.68 16 39 H 0.15 -0.41 8.06 -2.91 -0.02 -0.44 16 40 H 0.13 0.20 8.05 -2.91 -0.02 0.18 16 41 H 0.14 -0.42 7.40 -2.91 -0.02 -0.44 16 Total: 0.00 -10.99 355.35 6.19 -4.81 By element: Atomic # 1 Polarization: -5.08 SS G_CDS: 1.13 Total: -3.94 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 4.47 Total: 6.72 kcal Atomic # 8 Polarization: 0.56 SS G_CDS: -1.91 Total: -1.35 kcal Atomic # 14 Polarization: -8.41 SS G_CDS: 2.57 Total: -5.85 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -0.07 Total: -0.40 kcal Total: -10.99 6.19 -4.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_13286578.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.491 kcal (2) G-P(sol) polarization free energy of solvation -10.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds