Wall clock time and date at job start Mon Mar 8 2021 09:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86300 * 109.47156 * 2 1 4 4 C 1.86292 * 109.47295 * 239.99412 * 2 1 3 5 5 C 1.86801 * 109.46978 * 119.99474 * 2 1 3 6 6 C 1.38324 * 119.87522 * 89.99808 * 5 2 1 7 7 C 1.38025 * 120.12088 * 179.97438 * 6 5 2 8 8 C 1.39333 * 119.87559 * 0.02562 * 7 6 5 9 9 C 1.48378 * 120.11918 * 179.97438 * 8 7 6 10 10 C 1.39311 * 120.12800 * 130.00408 * 9 8 7 11 11 C 1.38040 * 119.89181 * 180.02562 * 10 9 8 12 12 C 1.38312 * 120.14824 * 359.97438 * 11 10 9 13 13 C 1.50698 * 119.87305 * 180.02562 * 12 11 10 14 14 O 1.42895 * 109.47080 * 300.00125 * 13 12 11 15 15 Si 1.86296 * 109.47229 * 179.97438 * 13 12 11 16 16 H 1.48499 * 109.47174 * 60.00094 * 15 13 12 17 17 H 1.48498 * 109.47146 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47269 * 299.99862 * 15 13 12 19 19 C 1.38319 * 120.25702 * 0.02562 * 12 11 10 20 20 C 1.38125 * 120.10785 * 359.72014 * 19 12 11 21 21 Cl 1.73595 * 120.07663 * 180.27397 * 20 19 12 22 22 C 1.39342 * 119.76240 * 359.96000 * 8 7 6 23 23 C 1.38024 * 119.87226 * 0.05952 * 22 8 7 24 24 H 1.08996 * 109.46898 * 300.00376 * 1 2 3 25 25 H 1.08996 * 109.46706 * 60.00497 * 1 2 3 26 26 H 1.09000 * 109.46783 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46915 * 179.97438 * 3 2 1 28 28 H 1.09006 * 109.46904 * 299.99375 * 3 2 1 29 29 H 1.09000 * 109.47178 * 59.99683 * 3 2 1 30 30 H 1.09001 * 109.47303 * 300.00641 * 4 2 1 31 31 H 1.09006 * 109.46907 * 59.99894 * 4 2 1 32 32 H 1.08998 * 109.47629 * 179.97438 * 4 2 1 33 33 H 1.08005 * 119.94013 * 359.97438 * 6 5 2 34 34 H 1.08001 * 120.05780 * 179.72479 * 7 6 5 35 35 H 1.07999 * 120.05276 * 359.97438 * 10 9 8 36 36 H 1.07997 * 119.92510 * 180.02562 * 11 10 9 37 37 H 1.09005 * 109.46724 * 59.99875 * 13 12 11 38 38 H 0.96702 * 114.00318 * 300.00127 * 14 13 12 39 39 H 1.07999 * 119.94568 * 179.97438 * 19 12 11 40 40 H 1.08002 * 120.06716 * 180.02562 * 22 8 7 41 41 H 1.08003 * 119.93423 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4841 -0.8783 -1.5210 5 6 2.4857 -0.8805 1.5253 6 6 2.7153 -2.2440 1.4883 7 6 3.1758 -2.8996 2.6122 8 6 3.4089 -2.1854 3.7857 9 6 3.9035 -2.8848 4.9972 10 6 5.0068 -2.3898 5.6890 11 6 5.4631 -3.0447 6.8152 12 6 4.8271 -4.1902 7.2582 13 6 5.3301 -4.8999 8.4888 14 8 6.6826 -5.3120 8.2816 15 14 4.2688 -6.3944 8.8213 16 1 4.3324 -7.3154 7.6581 17 1 4.7649 -7.0940 10.0335 18 1 2.8636 -5.9656 9.0369 19 6 3.7312 -4.6871 6.5761 20 6 3.2624 -4.0373 5.4509 21 17 1.8826 -4.6576 4.5996 22 6 3.1762 -0.8119 3.8172 23 6 2.7153 -0.1666 2.6875 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.5741 1.7564 0.0005 28 1 2.1208 2.2702 -0.8901 29 1 2.1207 2.2703 0.8900 30 1 2.1207 -1.9060 -1.5210 31 1 2.1207 -0.3646 -2.4110 32 1 3.5741 -0.8780 -1.5212 33 1 2.5339 -2.7967 0.5783 34 1 3.3505 -3.9650 2.5835 35 1 5.5047 -1.4956 5.3441 36 1 6.3181 -2.6612 7.3521 37 1 5.2830 -4.2240 9.3427 38 1 6.7998 -5.9163 7.5358 39 1 3.2386 -5.5822 6.9262 40 1 3.3556 -0.2534 4.7240 41 1 2.5342 0.8979 2.7110 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_13286580.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:20:36 Heat of formation + Delta-G solvation = -29.317910 kcal Electronic energy + Delta-G solvation = -21481.831579 eV Core-core repulsion = 18282.629993 eV Total energy + Delta-G solvation = -3199.201586 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 320.087 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.09349 -39.57498 -37.92288 -37.26054 -33.92655 -32.14719 -31.72402 -30.56807 -29.35415 -28.28780 -28.27131 -26.67773 -24.31769 -23.42543 -23.00569 -21.77658 -18.87260 -18.08954 -17.20836 -16.66863 -16.54947 -16.15534 -15.76785 -15.68414 -15.53056 -14.78722 -14.57208 -14.49583 -14.20873 -14.05859 -13.96695 -13.72686 -13.63749 -13.48544 -13.14303 -13.10763 -12.96730 -12.79520 -12.72302 -12.55663 -12.44987 -12.23540 -12.02746 -11.80752 -11.71510 -10.95537 -10.75836 -10.74856 -10.52833 -10.24392 -9.93102 -9.78370 -9.23149 -0.34309 0.04957 0.50710 0.55380 0.99927 1.11759 1.39522 1.46273 1.85262 1.86270 2.03666 2.09167 2.40736 2.67423 2.94798 3.34651 3.52317 3.55224 3.76762 4.02139 4.09902 4.13323 4.24720 4.41810 4.51702 4.55244 4.66982 4.74424 4.83853 4.84477 4.85708 4.88796 4.89275 4.90934 4.92387 5.00762 5.12305 5.21283 5.27663 5.44502 5.58105 5.58974 5.62049 5.65998 5.67686 5.71832 6.13321 6.64870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.125 2.875 3 C -0.459 4.459 4 C -0.462 4.462 5 C -0.375 4.375 6 C -0.101 4.101 7 C -0.119 4.119 8 C -0.061 4.061 9 C -0.042 4.042 10 C -0.095 4.095 11 C -0.080 4.080 12 C -0.107 4.107 13 C -0.069 4.069 14 O -0.547 6.547 15 Si 0.964 3.036 16 H -0.255 1.255 17 H -0.268 1.268 18 H -0.259 1.259 19 C -0.124 4.124 20 C -0.037 4.037 21 Cl -0.067 7.067 22 C -0.122 4.122 23 C -0.099 4.099 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.135 0.865 34 H 0.116 0.884 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.136 0.864 38 H 0.390 0.610 39 H 0.135 0.865 40 H 0.131 0.869 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.970 2.170 -1.053 2.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.312 2.688 3 C -0.567 4.567 4 C -0.569 4.569 5 C -0.414 4.414 6 C -0.119 4.119 7 C -0.137 4.137 8 C -0.061 4.061 9 C -0.042 4.042 10 C -0.113 4.113 11 C -0.098 4.098 12 C -0.107 4.107 13 C -0.180 4.180 14 O -0.354 6.354 15 Si 0.789 3.211 16 H -0.179 1.179 17 H -0.193 1.193 18 H -0.184 1.184 19 C -0.143 4.143 20 C -0.063 4.063 21 Cl -0.038 7.038 22 C -0.140 4.140 23 C -0.116 4.116 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.153 0.847 34 H 0.134 0.866 35 H 0.169 0.831 36 H 0.171 0.829 37 H 0.153 0.847 38 H 0.239 0.761 39 H 0.152 0.848 40 H 0.149 0.851 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.441 1.712 -0.389 1.811 hybrid contribution -0.132 -0.441 -0.405 0.613 sum 0.309 1.271 -0.794 1.530 Atomic orbital electron populations 1.26306 1.21861 1.04298 1.04548 0.77201 0.65057 0.64875 0.61681 1.26240 1.06485 1.19029 1.04912 1.26283 1.06457 1.08380 1.15825 1.28013 1.02744 0.99351 1.11293 1.21274 0.97420 0.95250 0.97927 1.21421 0.99570 0.99671 0.93069 1.18766 1.01062 0.93974 0.92327 1.18892 0.96163 0.93678 0.95515 1.21487 0.94643 1.00464 0.94672 1.21274 0.99511 0.93570 0.95486 1.20441 0.95367 0.97067 0.97857 1.24887 0.89631 1.06183 0.97326 1.86500 1.24443 1.68641 1.55775 0.85457 0.78040 0.77175 0.80379 1.17858 1.19273 1.18382 1.20999 0.97812 1.00661 0.94813 1.21017 0.92371 0.96725 0.96211 1.98378 1.41875 1.86614 1.76970 1.21464 0.99902 0.93039 0.99585 1.21327 0.97120 1.00749 0.92426 0.91420 0.90661 0.91665 0.91136 0.90672 0.90810 0.91135 0.90659 0.91219 0.84673 0.86582 0.83113 0.82869 0.84670 0.76096 0.84776 0.85138 0.84032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.28 8.65 113.37 0.98 2.26 16 2 Si 1.12 -5.94 12.31 68.60 0.84 -5.09 16 3 C -0.46 2.08 8.52 113.37 0.97 3.05 16 4 C -0.46 1.74 8.52 113.37 0.97 2.70 16 5 C -0.37 0.02 4.60 22.31 0.10 0.13 16 6 C -0.10 -0.21 9.28 22.24 0.21 0.00 16 7 C -0.12 -0.56 8.19 22.48 0.18 -0.38 16 8 C -0.06 -0.28 5.10 -20.05 -0.10 -0.38 16 9 C -0.04 -0.17 5.48 -20.02 -0.11 -0.28 16 10 C -0.09 -0.03 9.51 22.48 0.21 0.18 16 11 C -0.08 0.08 9.59 22.24 0.21 0.30 16 12 C -0.11 0.02 5.39 -19.83 -0.11 -0.09 16 13 C -0.07 0.17 2.82 71.24 0.20 0.38 16 14 O -0.55 0.89 12.76 -148.98 -1.90 -1.01 16 15 Si 0.96 -0.93 25.06 68.60 1.72 0.79 16 16 H -0.25 0.04 7.11 99.48 0.71 0.75 16 17 H -0.27 -0.53 7.11 99.48 0.71 0.18 16 18 H -0.26 -0.22 7.11 99.48 0.71 0.49 16 19 C -0.12 -0.32 8.44 22.26 0.19 -0.13 16 20 C -0.04 -0.18 6.28 22.54 0.14 -0.04 16 21 Cl -0.07 -0.40 26.00 -2.72 -0.07 -0.47 16 22 C -0.12 -0.31 9.51 22.48 0.21 -0.09 16 23 C -0.10 -0.05 9.28 22.24 0.21 0.15 16 24 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 25 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 26 H 0.06 -0.11 7.96 -2.39 -0.02 -0.13 16 27 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 28 H 0.07 -0.36 7.96 -2.38 -0.02 -0.38 16 29 H 0.07 -0.37 7.67 -2.39 -0.02 -0.39 16 30 H 0.07 -0.26 7.67 -2.39 -0.02 -0.28 16 31 H 0.07 -0.32 7.96 -2.38 -0.02 -0.33 16 32 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 33 H 0.14 -0.23 7.40 -2.91 -0.02 -0.25 16 34 H 0.12 0.53 7.17 -2.91 -0.02 0.51 16 35 H 0.15 -0.46 8.04 -2.91 -0.02 -0.48 16 36 H 0.15 -0.65 8.06 -2.91 -0.02 -0.68 16 37 H 0.14 -0.68 7.96 -2.38 -0.02 -0.70 16 38 H 0.39 -2.89 8.70 -74.06 -0.64 -3.54 16 39 H 0.13 0.17 4.86 -2.91 -0.01 0.15 16 40 H 0.13 -0.06 8.04 -2.91 -0.02 -0.08 16 41 H 0.14 -0.58 7.40 -2.91 -0.02 -0.60 16 Total: 0.00 -10.97 355.34 6.20 -4.78 By element: Atomic # 1 Polarization: -7.88 SS G_CDS: 1.14 Total: -6.74 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 4.47 Total: 7.75 kcal Atomic # 8 Polarization: 0.89 SS G_CDS: -1.90 Total: -1.01 kcal Atomic # 14 Polarization: -6.87 SS G_CDS: 2.56 Total: -4.30 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -0.07 Total: -0.47 kcal Total: -10.97 6.20 -4.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_13286580.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.540 kcal (2) G-P(sol) polarization free energy of solvation -10.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds