Wall clock time and date at job start Mon Mar 8 2021 09:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86289 * 1 3 3 C 1.86304 * 109.47354 * 2 1 4 4 C 1.86303 * 109.47380 * 240.00041 * 2 1 3 5 5 C 1.86806 * 109.47349 * 120.00139 * 2 1 3 6 6 C 1.38322 * 119.87600 * 89.99784 * 5 2 1 7 7 C 1.38018 * 120.11894 * 180.02562 * 6 5 2 8 8 C 1.39336 * 119.87767 * 359.97371 * 7 6 5 9 9 C 1.48385 * 120.12172 * 180.02562 * 8 7 6 10 10 C 1.39307 * 120.12215 * 310.25085 * 9 8 7 11 11 C 1.38041 * 119.88430 * 180.25729 * 10 9 8 12 12 C 1.38310 * 120.15134 * 359.48898 * 11 10 9 13 13 C 1.38326 * 120.25770 * 0.26062 * 12 11 10 14 14 C 1.50692 * 119.94764 * 180.02562 * 13 12 11 15 15 O 1.42904 * 109.46976 * 104.99740 * 14 13 12 16 16 Si 1.86303 * 109.47327 * 344.99973 * 14 13 12 17 17 H 1.48506 * 109.46920 * 59.99966 * 16 14 13 18 18 H 1.48500 * 109.47346 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46925 * 300.00003 * 16 14 13 20 20 C 1.38125 * 120.10552 * 359.97438 * 13 12 11 21 21 Cl 1.73597 * 120.07506 * 179.97438 * 20 13 12 22 22 C 1.39340 * 119.75782 * 0.27801 * 8 7 6 23 23 C 1.38015 * 119.87819 * 359.47293 * 22 8 7 24 24 H 1.09006 * 109.47160 * 299.99889 * 1 2 3 25 25 H 1.09001 * 109.47467 * 59.99810 * 1 2 3 26 26 H 1.09003 * 109.47631 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47283 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47232 * 300.00395 * 3 2 1 29 29 H 1.08997 * 109.46886 * 60.00161 * 3 2 1 30 30 H 1.09006 * 109.46996 * 300.00213 * 4 2 1 31 31 H 1.09001 * 109.46699 * 59.99678 * 4 2 1 32 32 H 1.08996 * 109.47654 * 179.97438 * 4 2 1 33 33 H 1.08003 * 119.94028 * 0.02562 * 6 5 2 34 34 H 1.07999 * 120.06123 * 180.02562 * 7 6 5 35 35 H 1.07997 * 120.05613 * 0.02562 * 10 9 8 36 36 H 1.08002 * 119.92722 * 179.77393 * 11 10 9 37 37 H 1.07995 * 119.87470 * 180.27761 * 12 11 10 38 38 H 1.09001 * 109.47426 * 224.99658 * 14 13 12 39 39 H 0.96700 * 114.00154 * 299.99961 * 15 14 13 40 40 H 1.08007 * 120.06384 * 179.72308 * 22 8 7 41 41 H 1.08003 * 119.94267 * 180.25286 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5252 6 6 2.7153 -2.2442 1.4881 7 6 3.1749 -2.8999 2.6122 8 6 3.4081 -2.1858 3.7857 9 6 3.9027 -2.8853 4.9972 10 6 3.2687 -4.0424 5.4443 11 6 3.7298 -4.6862 6.5750 12 6 4.8256 -4.1910 7.2583 13 6 5.4629 -3.0454 6.8168 14 6 6.6566 -2.5123 7.5663 15 8 7.8484 -2.8056 6.8344 16 14 6.7453 -3.3155 9.2450 17 1 6.8782 -4.7858 9.0838 18 1 7.9220 -2.7906 9.9833 19 1 5.5068 -3.0108 10.0055 20 6 5.0076 -2.3900 5.6894 21 17 5.8077 -0.9521 5.1364 22 6 3.1700 -0.8133 3.8189 23 6 2.7153 -0.1668 2.6875 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.5740 1.7565 0.0005 28 1 2.1206 2.2703 -0.8899 29 1 2.1207 2.2703 0.8900 30 1 2.1206 -1.9059 -1.5212 31 1 2.1206 -0.3644 -2.4111 32 1 3.5739 -0.8778 -1.5214 33 1 2.5346 -2.7966 0.5778 34 1 3.3543 -3.9645 2.5820 35 1 2.4157 -4.4329 4.9093 36 1 3.2365 -5.5813 6.9243 37 1 5.1852 -4.7008 8.1398 38 1 6.5592 -1.4331 7.6845 39 1 7.9998 -3.7499 6.6913 40 1 3.3448 -0.2557 4.7272 41 1 2.5343 0.8977 2.7109 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_13286612.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:20:43 Heat of formation + Delta-G solvation = -38.738681 kcal Electronic energy + Delta-G solvation = -21742.100447 eV Core-core repulsion = 18542.490346 eV Total energy + Delta-G solvation = -3199.610101 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 320.087 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.06184 -39.53112 -37.59267 -37.32902 -33.86625 -32.34225 -31.80494 -30.07918 -29.36764 -28.43273 -28.40277 -26.89555 -24.49777 -23.59178 -22.66299 -21.56289 -18.84217 -17.85780 -17.51372 -16.85258 -16.54003 -16.06149 -15.77925 -15.48253 -15.41337 -14.75963 -14.53482 -14.44098 -14.18396 -14.16006 -14.02087 -13.81786 -13.57915 -13.38354 -13.27446 -13.24807 -13.18865 -13.09143 -12.68927 -12.50781 -12.25689 -12.19389 -11.95834 -11.75119 -11.47875 -11.05648 -10.89136 -10.78881 -10.46954 -10.26697 -9.80797 -9.72564 -9.20212 -0.25673 0.04640 0.56133 0.60932 1.07074 1.22313 1.34935 1.47244 1.73148 1.85659 1.86343 1.96400 2.44023 2.56161 2.98245 3.36269 3.49452 3.57843 3.83824 4.02908 4.07442 4.16446 4.22404 4.43360 4.44053 4.56648 4.67750 4.71190 4.72440 4.73509 4.76387 4.76804 4.77481 4.77905 4.96489 5.08754 5.10269 5.21720 5.26505 5.43166 5.48331 5.52052 5.54538 5.65921 5.66885 5.68425 6.15321 6.52545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.058 2.942 3 C -0.450 4.450 4 C -0.449 4.449 5 C -0.364 4.364 6 C -0.090 4.090 7 C -0.111 4.111 8 C -0.047 4.047 9 C -0.037 4.037 10 C -0.091 4.091 11 C -0.107 4.107 12 C -0.117 4.117 13 C -0.111 4.111 14 C -0.083 4.083 15 O -0.528 6.528 16 Si 0.952 3.048 17 H -0.250 1.250 18 H -0.250 1.250 19 H -0.248 1.248 20 C -0.002 4.002 21 Cl -0.046 7.046 22 C -0.104 4.104 23 C -0.089 4.089 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.119 0.881 39 H 0.375 0.625 40 H 0.121 0.879 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.142 -1.899 -0.135 2.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.556 4.556 2 Si 1.250 2.750 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.405 4.405 6 C -0.108 4.108 7 C -0.129 4.129 8 C -0.047 4.047 9 C -0.038 4.038 10 C -0.109 4.109 11 C -0.125 4.125 12 C -0.135 4.135 13 C -0.112 4.112 14 C -0.194 4.194 15 O -0.333 6.333 16 Si 0.774 3.226 17 H -0.174 1.174 18 H -0.174 1.174 19 H -0.171 1.171 20 C -0.029 4.029 21 Cl -0.017 7.017 22 C -0.122 4.122 23 C -0.107 4.107 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.137 0.863 39 H 0.222 0.778 40 H 0.139 0.861 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.947 -1.527 0.695 2.570 hybrid contribution -0.011 -0.406 -0.309 0.510 sum -1.959 -1.933 0.387 2.779 Atomic orbital electron populations 1.26120 1.20456 1.04553 1.04474 0.78202 0.66862 0.66168 0.63797 1.26136 1.06496 1.18574 1.04535 1.26134 1.06489 1.08020 1.15057 1.27433 1.03485 0.99477 1.10150 1.20989 0.97527 0.94626 0.97609 1.21229 0.99642 0.99557 0.92505 1.18623 1.00258 0.93493 0.92304 1.18763 0.94488 0.95506 0.95046 1.21278 0.99569 0.93681 0.96386 1.21156 0.96142 1.00108 0.95065 1.21170 0.96472 0.95403 1.00427 1.20163 0.98884 0.96242 0.95927 1.25049 0.83362 1.06495 1.04456 1.86585 1.39686 1.29703 1.77320 0.85673 0.81884 0.79666 0.75407 1.17411 1.17359 1.17094 1.20834 0.94936 0.91437 0.95708 1.98391 1.78773 1.35799 1.88743 1.21318 0.98641 0.93295 0.98928 1.20998 0.97463 0.99657 0.92557 0.91173 0.91059 0.91181 0.91043 0.90981 0.91177 0.91183 0.90983 0.91041 0.85958 0.86178 0.84637 0.84682 0.84994 0.86297 0.77838 0.86127 0.85984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.60 8.65 101.05 0.87 1.47 16 2 Si 1.06 -2.32 12.31 -169.99 -2.09 -4.41 16 3 C -0.45 0.62 8.52 101.05 0.86 1.48 16 4 C -0.45 0.69 8.52 101.05 0.86 1.55 16 5 C -0.36 -0.07 4.60 -39.52 -0.18 -0.25 16 6 C -0.09 -0.05 9.28 -39.63 -0.37 -0.42 16 7 C -0.11 -0.15 9.51 -39.25 -0.37 -0.52 16 8 C -0.05 -0.10 5.11 -104.90 -0.54 -0.64 16 9 C -0.04 -0.07 5.48 -104.86 -0.57 -0.64 16 10 C -0.09 -0.02 9.51 -39.26 -0.37 -0.39 16 11 C -0.11 0.07 10.03 -39.63 -0.40 -0.32 16 12 C -0.12 0.03 8.66 -39.52 -0.34 -0.31 16 13 C -0.11 -0.11 5.26 -104.63 -0.55 -0.66 16 14 C -0.08 -0.02 2.09 36.00 0.08 0.05 16 15 O -0.53 -0.45 12.82 -35.23 -0.45 -0.90 16 16 Si 0.95 -0.68 25.49 -169.99 -4.33 -5.01 16 17 H -0.25 0.30 6.73 56.52 0.38 0.68 16 18 H -0.25 -0.19 7.11 56.52 0.40 0.21 16 19 H -0.25 0.02 7.11 56.52 0.40 0.43 16 20 C 0.00 -0.01 6.28 -39.16 -0.25 -0.25 16 21 Cl -0.05 -0.13 24.64 -51.86 -1.28 -1.41 16 22 C -0.10 -0.21 8.18 -39.25 -0.32 -0.53 16 23 C -0.09 -0.09 9.28 -39.63 -0.37 -0.46 16 24 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 25 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 26 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 27 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 28 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 29 H 0.07 -0.11 7.67 -51.93 -0.40 -0.50 16 30 H 0.07 -0.12 7.67 -51.93 -0.40 -0.52 16 31 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 32 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 33 H 0.12 -0.18 7.40 -52.48 -0.39 -0.56 16 34 H 0.12 -0.01 8.04 -52.49 -0.42 -0.43 16 35 H 0.14 -0.19 8.04 -52.49 -0.42 -0.61 16 36 H 0.14 -0.40 8.06 -52.49 -0.42 -0.83 16 37 H 0.13 -0.24 4.87 -52.49 -0.26 -0.50 16 38 H 0.12 0.04 7.40 -51.93 -0.38 -0.34 16 39 H 0.37 -0.95 8.70 45.56 0.40 -0.55 16 40 H 0.12 0.21 7.18 -52.48 -0.38 -0.17 16 41 H 0.12 -0.10 7.40 -52.48 -0.39 -0.49 16 LS Contribution 353.31 15.07 5.32 5.32 Total: 0.00 -5.03 353.31 -9.96 -14.99 By element: Atomic # 1 Polarization: -2.56 SS G_CDS: -5.17 Total: -7.73 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -1.96 Total: -0.85 kcal Atomic # 8 Polarization: -0.45 SS G_CDS: -0.45 Total: -0.90 kcal Atomic # 14 Polarization: -2.99 SS G_CDS: -6.42 Total: -9.42 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.28 Total: -1.41 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -5.03 -9.96 -14.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_13286612.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.750 kcal (2) G-P(sol) polarization free energy of solvation -5.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds