Wall clock time and date at job start Mon Mar 8 2021 09:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86289 * 1 3 3 C 1.86304 * 109.47354 * 2 1 4 4 C 1.86303 * 109.47380 * 240.00041 * 2 1 3 5 5 C 1.86806 * 109.47349 * 120.00139 * 2 1 3 6 6 C 1.38322 * 119.87600 * 89.99784 * 5 2 1 7 7 C 1.38018 * 120.11894 * 180.02562 * 6 5 2 8 8 C 1.39336 * 119.87767 * 359.97371 * 7 6 5 9 9 C 1.48385 * 120.12172 * 180.02562 * 8 7 6 10 10 C 1.39307 * 120.12215 * 310.25085 * 9 8 7 11 11 C 1.38041 * 119.88430 * 180.25729 * 10 9 8 12 12 C 1.38310 * 120.15134 * 359.48898 * 11 10 9 13 13 C 1.38326 * 120.25770 * 0.26062 * 12 11 10 14 14 C 1.50692 * 119.94764 * 180.02562 * 13 12 11 15 15 O 1.42904 * 109.46976 * 104.99740 * 14 13 12 16 16 Si 1.86303 * 109.47327 * 344.99973 * 14 13 12 17 17 H 1.48506 * 109.46920 * 59.99966 * 16 14 13 18 18 H 1.48500 * 109.47346 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46925 * 300.00003 * 16 14 13 20 20 C 1.38125 * 120.10552 * 359.97438 * 13 12 11 21 21 Cl 1.73597 * 120.07506 * 179.97438 * 20 13 12 22 22 C 1.39340 * 119.75782 * 0.27801 * 8 7 6 23 23 C 1.38015 * 119.87819 * 359.47293 * 22 8 7 24 24 H 1.09006 * 109.47160 * 299.99889 * 1 2 3 25 25 H 1.09001 * 109.47467 * 59.99810 * 1 2 3 26 26 H 1.09003 * 109.47631 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47283 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47232 * 300.00395 * 3 2 1 29 29 H 1.08997 * 109.46886 * 60.00161 * 3 2 1 30 30 H 1.09006 * 109.46996 * 300.00213 * 4 2 1 31 31 H 1.09001 * 109.46699 * 59.99678 * 4 2 1 32 32 H 1.08996 * 109.47654 * 179.97438 * 4 2 1 33 33 H 1.08003 * 119.94028 * 0.02562 * 6 5 2 34 34 H 1.07999 * 120.06123 * 180.02562 * 7 6 5 35 35 H 1.07997 * 120.05613 * 0.02562 * 10 9 8 36 36 H 1.08002 * 119.92722 * 179.77393 * 11 10 9 37 37 H 1.07995 * 119.87470 * 180.27761 * 12 11 10 38 38 H 1.09001 * 109.47426 * 224.99658 * 14 13 12 39 39 H 0.96700 * 114.00154 * 299.99961 * 15 14 13 40 40 H 1.08007 * 120.06384 * 179.72308 * 22 8 7 41 41 H 1.08003 * 119.94267 * 180.25286 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5252 6 6 2.7153 -2.2442 1.4881 7 6 3.1749 -2.8999 2.6122 8 6 3.4081 -2.1858 3.7857 9 6 3.9027 -2.8853 4.9972 10 6 3.2687 -4.0424 5.4443 11 6 3.7298 -4.6862 6.5750 12 6 4.8256 -4.1910 7.2583 13 6 5.4629 -3.0454 6.8168 14 6 6.6566 -2.5123 7.5663 15 8 7.8484 -2.8056 6.8344 16 14 6.7453 -3.3155 9.2450 17 1 6.8782 -4.7858 9.0838 18 1 7.9220 -2.7906 9.9833 19 1 5.5068 -3.0108 10.0055 20 6 5.0076 -2.3900 5.6894 21 17 5.8077 -0.9521 5.1364 22 6 3.1700 -0.8133 3.8189 23 6 2.7153 -0.1668 2.6875 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.5740 1.7565 0.0005 28 1 2.1206 2.2703 -0.8899 29 1 2.1207 2.2703 0.8900 30 1 2.1206 -1.9059 -1.5212 31 1 2.1206 -0.3644 -2.4111 32 1 3.5739 -0.8778 -1.5214 33 1 2.5346 -2.7966 0.5778 34 1 3.3543 -3.9645 2.5820 35 1 2.4157 -4.4329 4.9093 36 1 3.2365 -5.5813 6.9243 37 1 5.1852 -4.7008 8.1398 38 1 6.5592 -1.4331 7.6845 39 1 7.9998 -3.7499 6.6913 40 1 3.3448 -0.2557 4.7272 41 1 2.5343 0.8977 2.7109 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_13286612.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:20:42 Heat of formation + Delta-G solvation = -27.839025 kcal Electronic energy + Delta-G solvation = -21741.627803 eV Core-core repulsion = 18542.490346 eV Total energy + Delta-G solvation = -3199.137457 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 320.087 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.07236 -39.54696 -37.60598 -37.45220 -33.87603 -32.34494 -31.83156 -30.06493 -29.27071 -28.30164 -28.26783 -26.89637 -24.51461 -23.61221 -22.67251 -21.58621 -18.85044 -17.87073 -17.50628 -16.86890 -16.54547 -16.08530 -15.79115 -15.50441 -15.38890 -14.72843 -14.51958 -14.46638 -14.16481 -14.05617 -13.93571 -13.71813 -13.55712 -13.33707 -13.22864 -13.12505 -13.10740 -12.97139 -12.69181 -12.58794 -12.25817 -12.18109 -11.97725 -11.72474 -11.54595 -10.96095 -10.76467 -10.75610 -10.46332 -10.26754 -9.83846 -9.78634 -9.23953 -0.27983 0.03339 0.53936 0.55300 1.10398 1.12710 1.41076 1.51618 1.84854 1.88877 2.02455 2.09893 2.44805 2.67064 2.94850 3.38419 3.49384 3.63027 3.90761 4.04294 4.07203 4.14010 4.26948 4.42073 4.45181 4.56236 4.68160 4.76072 4.84249 4.84608 4.88016 4.88812 4.89658 4.90845 4.95120 5.07650 5.12356 5.20414 5.26968 5.44975 5.57762 5.58899 5.62084 5.67677 5.70307 5.70742 6.13186 6.67571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.460 4.460 2 Si 1.124 2.876 3 C -0.464 4.464 4 C -0.460 4.460 5 C -0.376 4.376 6 C -0.098 4.098 7 C -0.123 4.123 8 C -0.060 4.060 9 C -0.051 4.051 10 C -0.096 4.096 11 C -0.102 4.102 12 C -0.120 4.120 13 C -0.117 4.117 14 C -0.090 4.090 15 O -0.546 6.546 16 Si 0.992 3.008 17 H -0.234 1.234 18 H -0.274 1.274 19 H -0.255 1.255 20 C -0.022 4.022 21 Cl -0.064 7.064 22 C -0.121 4.121 23 C -0.101 4.101 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.142 0.858 34 H 0.130 0.870 35 H 0.150 0.850 36 H 0.163 0.837 37 H 0.151 0.849 38 H 0.110 0.890 39 H 0.388 0.612 40 H 0.114 0.886 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.827 -3.131 -0.343 4.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.567 4.567 2 Si 1.311 2.689 3 C -0.571 4.571 4 C -0.568 4.568 5 C -0.415 4.415 6 C -0.116 4.116 7 C -0.141 4.141 8 C -0.060 4.060 9 C -0.052 4.052 10 C -0.114 4.114 11 C -0.120 4.120 12 C -0.137 4.137 13 C -0.118 4.118 14 C -0.199 4.199 15 O -0.352 6.352 16 Si 0.813 3.187 17 H -0.158 1.158 18 H -0.199 1.199 19 H -0.179 1.179 20 C -0.048 4.048 21 Cl -0.035 7.035 22 C -0.139 4.139 23 C -0.119 4.119 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.160 0.840 34 H 0.148 0.852 35 H 0.167 0.833 36 H 0.181 0.819 37 H 0.168 0.832 38 H 0.128 0.872 39 H 0.237 0.763 40 H 0.132 0.868 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.632 -2.775 0.484 3.855 hybrid contribution 0.198 -0.018 -0.245 0.316 sum -2.434 -2.793 0.239 3.712 Atomic orbital electron populations 1.26255 1.21317 1.04570 1.04538 0.77215 0.65395 0.64500 0.61772 1.26305 1.06285 1.19710 1.04788 1.26254 1.06327 1.08565 1.15611 1.28024 1.02839 0.99698 1.10927 1.21327 0.97103 0.95028 0.98146 1.21453 0.99837 1.00215 0.92576 1.18781 1.00637 0.93658 0.92899 1.18932 0.94730 0.96274 0.95248 1.21511 0.99842 0.93160 0.96850 1.21508 0.95651 1.00569 0.94258 1.21426 0.96457 0.94902 1.00943 1.20320 0.99186 0.96680 0.95646 1.25218 0.83029 1.06355 1.05329 1.86545 1.39931 1.31163 1.77599 0.85113 0.80206 0.79973 0.73363 1.15755 1.19931 1.17851 1.21013 0.95656 0.91451 0.96723 1.98373 1.79149 1.36926 1.89027 1.21416 0.99562 0.93653 0.99253 1.21265 0.97477 1.00498 0.92646 0.91488 0.90635 0.91199 0.91539 0.90597 0.91097 0.90699 0.90619 0.91427 0.83999 0.85167 0.83272 0.81924 0.83177 0.87248 0.76303 0.86764 0.84744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.45 8.65 113.37 0.98 2.43 16 2 Si 1.12 -5.30 12.31 68.60 0.84 -4.46 16 3 C -0.46 1.28 8.52 113.37 0.97 2.24 16 4 C -0.46 1.72 8.52 113.37 0.97 2.68 16 5 C -0.38 -0.27 4.60 22.31 0.10 -0.17 16 6 C -0.10 -0.12 9.28 22.24 0.21 0.09 16 7 C -0.12 -0.40 9.51 22.48 0.21 -0.19 16 8 C -0.06 -0.33 5.11 -20.04 -0.10 -0.44 16 9 C -0.05 -0.24 5.48 -20.02 -0.11 -0.35 16 10 C -0.10 -0.02 9.51 22.48 0.21 0.19 16 11 C -0.10 0.26 10.03 22.24 0.22 0.48 16 12 C -0.12 0.15 8.66 22.31 0.19 0.34 16 13 C -0.12 -0.30 5.26 -19.87 -0.10 -0.40 16 14 C -0.09 -0.13 2.09 71.23 0.15 0.02 16 15 O -0.55 -1.43 12.82 -148.98 -1.91 -3.34 16 16 Si 0.99 -1.64 25.49 68.60 1.75 0.11 16 17 H -0.23 1.00 6.73 99.48 0.67 1.67 16 18 H -0.27 -0.61 7.11 99.48 0.71 0.10 16 19 H -0.25 0.15 7.11 99.48 0.71 0.86 16 20 C -0.02 -0.13 6.28 22.54 0.14 0.01 16 21 Cl -0.06 -0.51 24.64 -2.72 -0.07 -0.58 16 22 C -0.12 -0.71 8.18 22.48 0.18 -0.53 16 23 C -0.10 -0.31 9.28 22.24 0.21 -0.11 16 24 H 0.07 -0.15 7.96 -2.38 -0.02 -0.17 16 25 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 26 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 27 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 28 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 29 H 0.07 -0.20 7.67 -2.39 -0.02 -0.22 16 30 H 0.07 -0.34 7.67 -2.38 -0.02 -0.36 16 31 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 32 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 33 H 0.14 -0.50 7.40 -2.91 -0.02 -0.52 16 34 H 0.13 0.02 8.04 -2.91 -0.02 0.00 16 35 H 0.15 -0.48 8.04 -2.91 -0.02 -0.51 16 36 H 0.16 -1.37 8.06 -2.91 -0.02 -1.39 16 37 H 0.15 -0.81 4.87 -2.91 -0.01 -0.83 16 38 H 0.11 0.28 7.40 -2.39 -0.02 0.27 16 39 H 0.39 -1.80 8.70 -74.06 -0.64 -2.45 16 40 H 0.11 0.69 7.18 -2.91 -0.02 0.67 16 41 H 0.13 -0.08 7.40 -2.91 -0.02 -0.11 16 Total: 0.00 -12.54 353.31 6.15 -6.39 By element: Atomic # 1 Polarization: -5.55 SS G_CDS: 1.10 Total: -4.45 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 4.43 Total: 6.32 kcal Atomic # 8 Polarization: -1.43 SS G_CDS: -1.91 Total: -3.34 kcal Atomic # 14 Polarization: -6.94 SS G_CDS: 2.59 Total: -4.35 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -0.07 Total: -0.58 kcal Total: -12.54 6.15 -6.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_13286612.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.445 kcal (2) G-P(sol) polarization free energy of solvation -12.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds