Wall clock time and date at job start Mon Mar 8 2021 09:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86300 * 109.47011 * 2 1 4 4 C 1.86296 * 109.47142 * 239.99539 * 2 1 3 5 5 C 1.86801 * 109.47020 * 119.99463 * 2 1 3 6 6 C 1.38325 * 119.87442 * 90.00146 * 5 2 1 7 7 C 1.38024 * 120.12046 * 180.02562 * 6 5 2 8 8 C 1.39336 * 119.87507 * 359.97438 * 7 6 5 9 9 C 1.48394 * 120.11773 * 179.97438 * 8 7 6 10 10 C 1.39646 * 120.50919 * 180.02562 * 9 8 7 11 11 C 1.38932 * 118.26665 * 179.97438 * 10 9 8 12 12 O 1.35918 * 120.41170 * 180.02562 * 11 10 9 13 13 C 1.38784 * 119.17548 * 359.97438 * 11 10 9 14 14 C 1.50693 * 119.52763 * 179.97438 * 13 11 10 15 15 O 1.42909 * 109.47066 * 330.00107 * 14 13 11 16 16 Si 1.86300 * 109.47441 * 210.00043 * 14 13 11 17 17 H 1.48505 * 109.46724 * 59.99838 * 16 14 13 18 18 H 1.48493 * 109.47484 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47163 * 300.00303 * 16 14 13 20 20 N 1.31873 * 120.94426 * 359.72418 * 13 11 10 21 21 C 1.31706 * 121.91454 * 0.57226 * 20 13 11 22 22 C 1.39329 * 119.75964 * 0.25531 * 8 7 6 23 23 C 1.38017 * 119.87866 * 359.51611 * 22 8 7 24 24 H 1.08998 * 109.47433 * 300.00124 * 1 2 3 25 25 H 1.08999 * 109.47220 * 60.00230 * 1 2 3 26 26 H 1.09004 * 109.47157 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47063 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.46941 * 299.99941 * 3 2 1 29 29 H 1.08998 * 109.47123 * 59.99687 * 3 2 1 30 30 H 1.08997 * 109.47459 * 300.00611 * 4 2 1 31 31 H 1.08999 * 109.46874 * 60.00020 * 4 2 1 32 32 H 1.08997 * 109.47199 * 179.97438 * 4 2 1 33 33 H 1.08002 * 119.94014 * 359.97438 * 6 5 2 34 34 H 1.07995 * 120.06188 * 180.02562 * 7 6 5 35 35 H 1.07994 * 120.86335 * 359.95451 * 10 9 8 36 36 H 0.96707 * 113.99690 * 89.99782 * 12 11 10 37 37 H 1.08997 * 109.47048 * 90.00048 * 14 13 11 38 38 H 0.96698 * 113.99815 * 300.00162 * 15 14 13 39 39 H 1.08002 * 119.64641 * 179.71137 * 21 20 13 40 40 H 1.07999 * 120.05905 * 179.75024 * 22 8 7 41 41 H 1.08001 * 119.94321 * 180.23215 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5210 5 6 2.4857 -0.8804 1.5253 6 6 2.7154 -2.2440 1.4883 7 6 3.1749 -2.8998 2.6125 8 6 3.4079 -2.1855 3.7860 9 6 3.9015 -2.8852 4.9979 10 6 4.1373 -2.1776 6.1785 11 6 4.5985 -2.8793 7.2853 12 8 4.8419 -2.2341 8.4566 13 6 4.8065 -4.2474 7.1804 14 6 5.3072 -5.0163 8.3758 15 8 6.1193 -4.1631 9.1850 16 14 6.3176 -6.4716 7.7996 17 1 7.4735 -5.9872 7.0030 18 1 6.8115 -7.2289 8.9775 19 1 5.4738 -7.3582 6.9587 20 7 4.5677 -4.8850 6.0510 21 6 4.1354 -4.2589 4.9760 22 6 3.1703 -0.8131 3.8190 23 6 2.7153 -0.1667 2.6876 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.5740 1.7565 -0.0005 28 1 2.1207 2.2703 -0.8900 29 1 2.1206 2.2703 0.8899 30 1 2.1207 -1.9059 -1.5211 31 1 2.1207 -0.3645 -2.4110 32 1 3.5740 -0.8779 -1.5213 33 1 2.5340 -2.7967 0.5783 34 1 3.3543 -3.9643 2.5824 35 1 3.9659 -1.1125 6.2296 36 1 4.0790 -2.1943 9.0496 37 1 4.4588 -5.3718 8.9605 38 1 6.8946 -3.8091 8.7282 39 1 3.9561 -4.8168 4.0687 40 1 3.3454 -0.2554 4.7271 41 1 2.5343 0.8978 2.7109 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_13453832.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:20:58 Heat of formation + Delta-G solvation = -63.311168 kcal Electronic energy + Delta-G solvation = -21653.119337 eV Core-core repulsion = 18428.135382 eV Total energy + Delta-G solvation = -3224.983955 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 303.120 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.86044 -39.96400 -38.22480 -37.51111 -34.54511 -32.34605 -31.48075 -30.72788 -29.55102 -28.50205 -28.45922 -27.07158 -25.02541 -23.93172 -22.88407 -22.02728 -19.56240 -18.51018 -18.18243 -17.81485 -16.72391 -16.67212 -16.13575 -15.59933 -15.53190 -15.27215 -14.76167 -14.62631 -14.54202 -14.26197 -14.13664 -14.10154 -13.91152 -13.83104 -13.64800 -13.32743 -13.30455 -13.15095 -13.08308 -12.72085 -12.39083 -12.02173 -11.93839 -11.70763 -11.46228 -11.00043 -10.95572 -10.92103 -10.73074 -10.33260 -10.00884 -9.89963 -9.08906 -0.63643 0.02144 0.46229 0.62849 1.28144 1.63413 1.64534 1.74616 1.79460 1.89583 2.12076 2.48769 2.49849 2.89196 3.00048 3.17740 3.32765 3.54237 3.71273 3.75417 3.93873 3.99619 4.19811 4.33205 4.41757 4.53771 4.60923 4.65455 4.66040 4.69291 4.70629 4.71112 4.72031 4.84011 4.88951 4.94861 5.07225 5.26149 5.39141 5.44860 5.47397 5.49459 5.54450 5.55266 6.00700 6.48774 6.58214 6.81925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.365 4.365 6 C -0.085 4.085 7 C -0.117 4.117 8 C -0.040 4.040 9 C -0.076 4.076 10 C -0.098 4.098 11 C 0.086 3.914 12 O -0.474 6.474 13 C 0.064 3.936 14 C -0.074 4.074 15 O -0.525 6.525 16 Si 0.982 3.018 17 H -0.260 1.260 18 H -0.261 1.261 19 H -0.243 1.243 20 N -0.462 5.462 21 C 0.105 3.895 22 C -0.118 4.118 23 C -0.086 4.086 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.145 0.855 36 H 0.394 0.606 37 H 0.126 0.874 38 H 0.377 0.623 39 H 0.165 0.835 40 H 0.122 0.878 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.159 1.874 -2.249 3.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.252 2.748 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.406 4.406 6 C -0.103 4.103 7 C -0.135 4.135 8 C -0.041 4.041 9 C -0.078 4.078 10 C -0.124 4.124 11 C 0.039 3.961 12 O -0.283 6.283 13 C -0.074 4.074 14 C -0.184 4.184 15 O -0.329 6.329 16 Si 0.803 3.197 17 H -0.184 1.184 18 H -0.185 1.185 19 H -0.166 1.166 20 N -0.173 5.173 21 C -0.053 4.053 22 C -0.136 4.136 23 C -0.103 4.103 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.163 0.837 36 H 0.251 0.749 37 H 0.143 0.857 38 H 0.225 0.775 39 H 0.182 0.818 40 H 0.139 0.861 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.395 0.193 -2.230 2.638 hybrid contribution -0.526 1.427 0.085 1.523 sum -1.921 1.620 -2.145 3.304 Atomic orbital electron populations 1.26128 1.20430 1.04607 1.04520 0.78179 0.66870 0.66117 0.63669 1.26141 1.06483 1.18563 1.04599 1.26137 1.06487 1.08067 1.15078 1.27500 1.03329 0.99527 1.10280 1.21043 0.96949 0.94612 0.97690 1.21299 0.99791 0.99812 0.92595 1.18591 0.99877 0.93439 0.92152 1.19773 1.00024 0.94462 0.93516 1.22096 0.96838 1.01317 0.92101 1.19017 0.98842 0.90275 0.87985 1.84859 1.40123 1.76662 1.26638 1.22371 0.98537 0.91550 0.94934 1.24908 1.00584 1.01020 0.91893 1.86516 1.40416 1.66883 1.39043 0.85135 0.78835 0.76670 0.79106 1.18390 1.18512 1.16579 1.67183 1.11749 1.39485 0.98866 1.22868 0.94984 0.91023 0.96414 1.21288 0.99841 0.93515 0.98908 1.21030 0.97035 0.99784 0.92495 0.91179 0.90996 0.91147 0.91040 0.90911 0.91175 0.91138 0.90916 0.91032 0.85707 0.85762 0.83734 0.74907 0.85690 0.77539 0.81823 0.86057 0.85807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.88 8.65 101.05 0.87 1.75 16 2 Si 1.06 -3.23 12.31 -169.99 -2.09 -5.33 16 3 C -0.45 1.01 8.52 101.05 0.86 1.87 16 4 C -0.45 1.03 8.52 101.05 0.86 1.89 16 5 C -0.36 0.32 4.60 -39.52 -0.18 0.14 16 6 C -0.09 0.04 9.28 -39.63 -0.37 -0.32 16 7 C -0.12 -0.01 9.44 -39.25 -0.37 -0.38 16 8 C -0.04 -0.03 5.88 -104.90 -0.62 -0.65 16 9 C -0.08 -0.08 5.89 -104.77 -0.62 -0.70 16 10 C -0.10 -0.07 9.49 -38.80 -0.37 -0.44 16 11 C 0.09 0.09 6.59 -39.12 -0.26 -0.17 16 12 O -0.47 -0.06 11.23 -42.39 -0.48 -0.53 16 13 C 0.06 0.11 6.08 -82.38 -0.50 -0.39 16 14 C -0.07 -0.04 2.92 36.00 0.11 0.06 16 15 O -0.52 -0.46 10.62 -58.14 -0.62 -1.08 16 16 Si 0.98 1.25 27.17 -169.99 -4.62 -3.37 16 17 H -0.26 -0.62 7.11 56.52 0.40 -0.21 16 18 H -0.26 -0.53 7.11 56.52 0.40 -0.13 16 19 H -0.24 -0.60 7.11 56.52 0.40 -0.19 16 20 N -0.46 -1.18 8.35 -9.08 -0.08 -1.25 16 21 C 0.11 0.14 10.60 -17.19 -0.18 -0.05 16 22 C -0.12 -0.04 9.44 -39.26 -0.37 -0.41 16 23 C -0.09 0.03 9.28 -39.63 -0.37 -0.33 16 24 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 25 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 26 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 27 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 28 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 29 H 0.07 -0.17 7.67 -51.93 -0.40 -0.57 16 30 H 0.07 -0.17 7.67 -51.93 -0.40 -0.57 16 31 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 32 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 33 H 0.13 -0.31 7.40 -52.49 -0.39 -0.70 16 34 H 0.12 -0.21 6.23 -52.49 -0.33 -0.54 16 35 H 0.15 -0.13 6.32 -52.49 -0.33 -0.47 16 36 H 0.39 -1.34 9.06 45.56 0.41 -0.92 16 37 H 0.13 -0.09 7.96 -51.93 -0.41 -0.50 16 38 H 0.38 -0.39 8.70 45.56 0.40 0.00 16 39 H 0.16 -0.16 6.22 -52.49 -0.33 -0.49 16 40 H 0.12 -0.14 6.27 -52.49 -0.33 -0.47 16 41 H 0.12 -0.28 7.40 -52.49 -0.39 -0.67 16 LS Contribution 342.82 15.07 5.17 5.17 Total: 0.00 -6.46 342.82 -8.39 -14.85 By element: Atomic # 1 Polarization: -6.14 SS G_CDS: -4.18 Total: -10.33 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -1.50 Total: 1.88 kcal Atomic # 7 Polarization: -1.18 SS G_CDS: -0.08 Total: -1.25 kcal Atomic # 8 Polarization: -0.52 SS G_CDS: -1.09 Total: -1.61 kcal Atomic # 14 Polarization: -1.99 SS G_CDS: -6.71 Total: -8.70 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -6.46 -8.39 -14.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_13453832.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.462 kcal (2) G-P(sol) polarization free energy of solvation -6.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds