Wall clock time and date at job start Mon Mar 8 2021 09:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86300 * 109.47011 * 2 1 4 4 C 1.86296 * 109.47142 * 239.99539 * 2 1 3 5 5 C 1.86801 * 109.47020 * 119.99463 * 2 1 3 6 6 C 1.38325 * 119.87442 * 90.00146 * 5 2 1 7 7 C 1.38024 * 120.12046 * 180.02562 * 6 5 2 8 8 C 1.39336 * 119.87507 * 359.97438 * 7 6 5 9 9 C 1.48394 * 120.11773 * 179.97438 * 8 7 6 10 10 C 1.39646 * 120.50919 * 180.02562 * 9 8 7 11 11 C 1.38932 * 118.26665 * 179.97438 * 10 9 8 12 12 O 1.35918 * 120.41170 * 180.02562 * 11 10 9 13 13 C 1.38784 * 119.17548 * 359.97438 * 11 10 9 14 14 C 1.50693 * 119.52763 * 179.97438 * 13 11 10 15 15 O 1.42909 * 109.47066 * 330.00107 * 14 13 11 16 16 Si 1.86300 * 109.47441 * 210.00043 * 14 13 11 17 17 H 1.48505 * 109.46724 * 59.99838 * 16 14 13 18 18 H 1.48493 * 109.47484 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47163 * 300.00303 * 16 14 13 20 20 N 1.31873 * 120.94426 * 359.72418 * 13 11 10 21 21 C 1.31706 * 121.91454 * 0.57226 * 20 13 11 22 22 C 1.39329 * 119.75964 * 0.25531 * 8 7 6 23 23 C 1.38017 * 119.87866 * 359.51611 * 22 8 7 24 24 H 1.08998 * 109.47433 * 300.00124 * 1 2 3 25 25 H 1.08999 * 109.47220 * 60.00230 * 1 2 3 26 26 H 1.09004 * 109.47157 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47063 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.46941 * 299.99941 * 3 2 1 29 29 H 1.08998 * 109.47123 * 59.99687 * 3 2 1 30 30 H 1.08997 * 109.47459 * 300.00611 * 4 2 1 31 31 H 1.08999 * 109.46874 * 60.00020 * 4 2 1 32 32 H 1.08997 * 109.47199 * 179.97438 * 4 2 1 33 33 H 1.08002 * 119.94014 * 359.97438 * 6 5 2 34 34 H 1.07995 * 120.06188 * 180.02562 * 7 6 5 35 35 H 1.07994 * 120.86335 * 359.95451 * 10 9 8 36 36 H 0.96707 * 113.99690 * 89.99782 * 12 11 10 37 37 H 1.08997 * 109.47048 * 90.00048 * 14 13 11 38 38 H 0.96698 * 113.99815 * 300.00162 * 15 14 13 39 39 H 1.08002 * 119.64641 * 179.71137 * 21 20 13 40 40 H 1.07999 * 120.05905 * 179.75024 * 22 8 7 41 41 H 1.08001 * 119.94321 * 180.23215 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5210 5 6 2.4857 -0.8804 1.5253 6 6 2.7154 -2.2440 1.4883 7 6 3.1749 -2.8998 2.6125 8 6 3.4079 -2.1855 3.7860 9 6 3.9015 -2.8852 4.9979 10 6 4.1373 -2.1776 6.1785 11 6 4.5985 -2.8793 7.2853 12 8 4.8419 -2.2341 8.4566 13 6 4.8065 -4.2474 7.1804 14 6 5.3072 -5.0163 8.3758 15 8 6.1193 -4.1631 9.1850 16 14 6.3176 -6.4716 7.7996 17 1 7.4735 -5.9872 7.0030 18 1 6.8115 -7.2289 8.9775 19 1 5.4738 -7.3582 6.9587 20 7 4.5677 -4.8850 6.0510 21 6 4.1354 -4.2589 4.9760 22 6 3.1703 -0.8131 3.8190 23 6 2.7153 -0.1667 2.6876 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.5740 1.7565 -0.0005 28 1 2.1207 2.2703 -0.8900 29 1 2.1206 2.2703 0.8899 30 1 2.1207 -1.9059 -1.5211 31 1 2.1207 -0.3645 -2.4110 32 1 3.5740 -0.8779 -1.5213 33 1 2.5340 -2.7967 0.5783 34 1 3.3543 -3.9643 2.5824 35 1 3.9659 -1.1125 6.2296 36 1 4.0790 -2.1943 9.0496 37 1 4.4588 -5.3718 8.9605 38 1 6.8946 -3.8091 8.7282 39 1 3.9561 -4.8168 4.0687 40 1 3.3454 -0.2554 4.7271 41 1 2.5343 0.8978 2.7109 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_13453832.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:20:58 Heat of formation + Delta-G solvation = -56.418484 kcal Electronic energy + Delta-G solvation = -21652.820448 eV Core-core repulsion = 18428.135382 eV Total energy + Delta-G solvation = -3224.685066 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 303.120 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.88565 -39.90215 -38.22962 -37.54123 -34.54747 -32.29917 -31.46050 -30.70480 -29.36384 -28.29587 -28.26409 -27.08611 -25.02789 -23.93319 -22.83817 -22.00918 -19.55606 -18.52631 -18.17570 -17.81789 -16.76097 -16.68042 -16.09419 -15.57628 -15.49795 -15.31725 -14.71292 -14.63490 -14.55772 -14.13482 -14.02310 -13.95584 -13.83622 -13.70325 -13.56407 -13.16190 -13.10437 -12.96804 -12.94822 -12.74726 -12.43672 -12.18612 -11.93426 -11.77666 -11.44145 -10.93743 -10.79347 -10.75147 -10.71916 -10.36578 -10.02681 -9.83922 -9.07699 -0.64522 -0.00772 0.52331 0.64852 1.20319 1.48421 1.59977 1.84710 1.97077 2.03103 2.09905 2.49762 2.67202 2.89423 3.03874 3.17763 3.32009 3.55161 3.73419 3.77295 3.99700 4.06975 4.21807 4.39230 4.50681 4.58800 4.64487 4.82709 4.84814 4.85363 4.88897 4.89547 4.90551 4.91558 4.95222 4.96880 5.16386 5.30079 5.49603 5.56941 5.59448 5.60235 5.68540 5.71616 6.09768 6.52481 6.68813 6.80249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.128 2.872 3 C -0.463 4.463 4 C -0.463 4.463 5 C -0.376 4.376 6 C -0.097 4.097 7 C -0.129 4.129 8 C -0.057 4.057 9 C -0.077 4.077 10 C -0.103 4.103 11 C 0.087 3.913 12 O -0.480 6.480 13 C 0.050 3.950 14 C -0.065 4.065 15 O -0.531 6.531 16 Si 1.010 2.990 17 H -0.278 1.278 18 H -0.270 1.270 19 H -0.261 1.261 20 N -0.482 5.482 21 C 0.094 3.906 22 C -0.130 4.130 23 C -0.098 4.098 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.142 0.858 34 H 0.136 0.864 35 H 0.158 0.842 36 H 0.409 0.591 37 H 0.139 0.861 38 H 0.385 0.615 39 H 0.179 0.821 40 H 0.131 0.869 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.603 2.588 -2.548 4.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.315 2.685 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.415 4.415 6 C -0.115 4.115 7 C -0.147 4.147 8 C -0.057 4.057 9 C -0.079 4.079 10 C -0.129 4.129 11 C 0.040 3.960 12 O -0.291 6.291 13 C -0.088 4.088 14 C -0.176 4.176 15 O -0.336 6.336 16 Si 0.834 3.166 17 H -0.203 1.203 18 H -0.195 1.195 19 H -0.185 1.185 20 N -0.193 5.193 21 C -0.064 4.064 22 C -0.148 4.148 23 C -0.116 4.116 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.160 0.840 34 H 0.154 0.846 35 H 0.176 0.824 36 H 0.268 0.732 37 H 0.157 0.843 38 H 0.233 0.767 39 H 0.196 0.804 40 H 0.149 0.851 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.841 0.904 -2.509 3.240 hybrid contribution -0.392 1.227 0.147 1.296 sum -2.233 2.130 -2.362 3.886 Atomic orbital electron populations 1.26302 1.21704 1.04464 1.04524 0.77138 0.65079 0.64557 0.61685 1.26294 1.06402 1.19501 1.04850 1.26287 1.06415 1.08552 1.15758 1.28040 1.02617 0.99692 1.11155 1.21363 0.96819 0.95086 0.98222 1.21565 0.99772 1.00643 0.92692 1.18717 1.00771 0.93885 0.92366 1.19873 0.99725 0.94459 0.93832 1.22283 0.96685 1.02026 0.91907 1.19017 0.98488 0.90068 0.88409 1.84818 1.41246 1.76427 1.26608 1.22523 0.99108 0.92082 0.95047 1.24819 1.00687 1.00260 0.91821 1.86493 1.40848 1.66866 1.39373 0.84728 0.77717 0.76376 0.77750 1.20274 1.19531 1.18543 1.67179 1.12513 1.40169 0.99454 1.23149 0.95053 0.91465 0.96717 1.21524 0.99975 0.93570 0.99724 1.21338 0.96972 1.00788 0.92487 0.91430 0.90757 0.91380 0.91326 0.90748 0.90893 0.90817 0.90759 0.91303 0.83991 0.84582 0.82430 0.73156 0.84337 0.76705 0.80384 0.85109 0.84178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.06 8.65 113.37 0.98 3.04 16 2 Si 1.13 -7.66 12.31 68.60 0.84 -6.82 16 3 C -0.46 2.38 8.52 113.37 0.97 3.35 16 4 C -0.46 2.42 8.52 113.37 0.97 3.39 16 5 C -0.38 0.81 4.60 22.31 0.10 0.91 16 6 C -0.10 0.12 9.28 22.24 0.21 0.33 16 7 C -0.13 -0.06 9.44 22.48 0.21 0.15 16 8 C -0.06 -0.12 5.88 -20.05 -0.12 -0.24 16 9 C -0.08 -0.21 5.89 -19.96 -0.12 -0.33 16 10 C -0.10 -0.17 9.49 22.78 0.22 0.05 16 11 C 0.09 0.20 6.59 22.57 0.15 0.35 16 12 O -0.48 0.05 11.23 -70.72 -0.79 -0.74 16 13 C 0.05 0.20 6.08 42.68 0.26 0.46 16 14 C -0.06 -0.09 2.92 71.23 0.21 0.12 16 15 O -0.53 -0.87 10.62 -127.08 -1.35 -2.22 16 16 Si 1.01 3.53 27.17 68.60 1.86 5.40 16 17 H -0.28 -1.71 7.11 99.48 0.71 -1.00 16 18 H -0.27 -1.29 7.11 99.48 0.71 -0.59 16 19 H -0.26 -1.66 7.11 99.48 0.71 -0.95 16 20 N -0.48 -2.85 8.35 -182.65 -1.53 -4.38 16 21 C 0.09 0.31 10.60 84.98 0.90 1.21 16 22 C -0.13 -0.10 9.44 22.48 0.21 0.11 16 23 C -0.10 0.10 9.28 22.24 0.21 0.31 16 24 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 25 H 0.07 -0.36 7.96 -2.39 -0.02 -0.37 16 26 H 0.07 -0.26 7.96 -2.38 -0.02 -0.28 16 27 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 28 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 29 H 0.07 -0.41 7.67 -2.39 -0.02 -0.43 16 30 H 0.07 -0.42 7.67 -2.39 -0.02 -0.44 16 31 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 32 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 33 H 0.14 -0.79 7.40 -2.91 -0.02 -0.82 16 34 H 0.14 -0.43 6.23 -2.91 -0.02 -0.45 16 35 H 0.16 -0.31 6.32 -2.91 -0.02 -0.32 16 36 H 0.41 -3.00 9.06 -74.05 -0.67 -3.67 16 37 H 0.14 -0.23 7.96 -2.39 -0.02 -0.25 16 38 H 0.38 -0.74 8.70 -74.06 -0.64 -1.39 16 39 H 0.18 -0.22 6.22 -2.91 -0.02 -0.23 16 40 H 0.13 -0.31 6.27 -2.91 -0.02 -0.33 16 41 H 0.14 -0.73 7.40 -2.91 -0.02 -0.75 16 Total: 0.00 -14.45 342.82 4.89 -9.56 By element: Atomic # 1 Polarization: -14.50 SS G_CDS: 0.50 Total: -13.99 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 5.35 Total: 13.20 kcal Atomic # 7 Polarization: -2.85 SS G_CDS: -1.53 Total: -4.38 kcal Atomic # 8 Polarization: -0.82 SS G_CDS: -2.14 Total: -2.97 kcal Atomic # 14 Polarization: -4.13 SS G_CDS: 2.71 Total: -1.42 kcal Total: -14.45 4.89 -9.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_13453832.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.856 kcal (2) G-P(sol) polarization free energy of solvation -14.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds