Wall clock time and date at job start Mon Mar 8 2021 09:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38413 * 120.35689 * 2 1 4 4 C 1.39767 * 118.31340 * 180.02562 * 3 2 1 5 5 C 1.48395 * 120.53639 * 180.02562 * 4 3 2 6 6 C 1.39331 * 120.11938 * 359.70167 * 5 4 3 7 7 C 1.38022 * 119.87622 * 179.74707 * 6 5 4 8 8 C 1.38327 * 120.12003 * 0.55119 * 7 6 5 9 9 Si 1.86799 * 119.87950 * 179.72058 * 8 7 6 10 10 C 1.86303 * 109.47037 * 269.97923 * 9 8 7 11 11 C 1.86302 * 109.47015 * 29.97675 * 9 8 7 12 12 C 1.86301 * 109.47018 * 149.97731 * 9 8 7 13 13 C 1.38319 * 120.24014 * 359.70179 * 8 7 6 14 14 C 1.38017 * 120.12376 * 0.02562 * 13 8 7 15 15 C 1.39295 * 118.92287 * 359.97438 * 4 3 2 16 16 N 1.31748 * 120.60011 * 0.25494 * 15 4 3 17 17 C 1.31883 * 121.85247 * 359.47816 * 16 15 4 18 18 C 1.50697 * 119.48661 * 180.24688 * 17 16 15 19 19 O 1.42894 * 109.47256 * 67.70873 * 18 17 16 20 20 Si 1.86292 * 109.47257 * 307.70592 * 18 17 16 21 21 H 1.48503 * 109.47135 * 59.99997 * 20 18 17 22 22 H 1.48498 * 109.47447 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47266 * 300.00316 * 20 18 17 24 24 H 1.09000 * 109.47159 * 95.75232 * 1 2 3 25 25 H 1.09006 * 109.46628 * 215.75270 * 1 2 3 26 26 H 1.08996 * 109.47212 * 335.74749 * 1 2 3 27 27 H 1.08002 * 120.84597 * 0.04187 * 3 2 1 28 28 H 1.07999 * 120.06421 * 0.02562 * 6 5 4 29 29 H 1.08005 * 119.94319 * 180.27005 * 7 6 5 30 30 H 1.08997 * 109.47171 * 60.00227 * 10 9 8 31 31 H 1.09006 * 109.46654 * 180.02562 * 10 9 8 32 32 H 1.09001 * 109.46994 * 299.99647 * 10 9 8 33 33 H 1.09004 * 109.46926 * 59.99768 * 11 9 8 34 34 H 1.08997 * 109.46837 * 179.97438 * 11 9 8 35 35 H 1.09000 * 109.47116 * 300.00256 * 11 9 8 36 36 H 1.08995 * 109.46983 * 60.00133 * 12 9 8 37 37 H 1.08996 * 109.46869 * 180.02562 * 12 9 8 38 38 H 1.08994 * 109.47113 * 300.00273 * 12 9 8 39 39 H 1.07999 * 119.93503 * 180.02562 * 13 8 7 40 40 H 1.08000 * 120.06031 * 180.02562 * 14 13 8 41 41 H 1.08003 * 119.69728 * 179.97438 * 15 4 3 42 42 H 1.09004 * 109.47082 * 187.70944 * 18 17 16 43 43 H 0.96700 * 114.00096 * 300.00291 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2066 1.1944 0.0000 4 6 3.6034 1.1445 -0.0006 5 6 4.4024 2.3950 0.0000 6 6 3.7634 3.6331 -0.0052 7 6 4.5115 4.7929 0.0006 8 6 5.8932 4.7277 0.0001 9 14 6.8991 6.3018 0.0001 10 6 7.2334 6.8251 -1.7564 11 6 5.9518 7.6441 0.8784 12 6 8.5153 6.0059 0.8782 13 6 6.5327 3.5013 -0.0001 14 6 5.7945 2.3351 -0.0002 15 6 4.2331 -0.0979 -0.0005 16 7 3.5248 -1.2088 -0.0050 17 6 2.2061 -1.1935 0.0005 18 6 1.4491 -2.4965 0.0005 19 8 1.6569 -3.1681 1.2446 20 14 2.0603 -3.5698 -1.3941 21 1 3.5094 -3.8392 -1.2131 22 1 1.3139 -4.8536 -1.3945 23 1 1.8443 -2.8719 -2.6870 24 1 -0.3633 -0.1030 -1.0225 25 1 -0.3633 -0.8341 0.6005 26 1 -0.3633 0.9369 0.4221 27 1 1.6863 2.1408 0.0007 28 1 2.6846 3.6851 -0.0092 29 1 4.0172 5.7532 0.0010 30 1 6.2878 6.9982 -2.2702 31 1 7.8208 7.7434 -1.7564 32 1 7.7877 6.0397 -2.2703 33 1 5.7561 7.3379 1.9060 34 1 6.5389 8.5624 0.8787 35 1 5.0061 7.8172 0.3646 36 1 9.0695 5.2205 0.3644 37 1 9.1020 6.9244 0.8786 38 1 8.3197 5.6996 1.9058 39 1 7.6118 3.4561 -0.0001 40 1 6.2949 1.3780 0.0001 41 1 5.3118 -0.1510 -0.0014 42 1 0.3855 -2.2988 -0.1324 43 1 2.5830 -3.3761 1.4294 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_13614048.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:21:05 Heat of formation + Delta-G solvation = -29.671603 kcal Electronic energy + Delta-G solvation = -21369.280920 eV Core-core repulsion = 18308.900259 eV Total energy + Delta-G solvation = -3060.380661 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 301.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.71173 -39.82992 -37.66777 -34.85444 -34.37080 -32.02835 -30.71288 -29.53723 -28.67404 -28.44670 -28.42430 -27.11727 -24.30121 -23.78142 -22.59849 -21.52897 -18.84511 -18.10062 -17.81493 -17.01993 -16.37755 -15.81708 -15.59434 -15.22122 -15.08474 -14.93793 -14.70307 -14.46753 -14.25102 -14.20355 -13.99216 -13.93309 -13.81469 -13.76079 -13.62727 -13.39765 -13.28963 -13.25262 -13.13505 -12.88887 -12.38810 -12.14927 -11.95514 -11.69677 -11.35670 -10.95936 -10.93767 -10.86251 -10.70205 -10.28431 -10.10053 -9.86553 -9.03962 -0.54799 0.19220 0.49647 0.69261 1.22663 1.57088 1.65579 1.66823 1.81085 1.91918 2.04368 2.50663 2.61662 3.05497 3.07748 3.47656 3.55761 3.62267 3.80448 3.82205 3.98303 4.03491 4.14158 4.37784 4.41446 4.52178 4.55947 4.59065 4.66630 4.66732 4.68602 4.71868 4.72484 4.73320 4.74006 4.90692 4.97335 5.04936 5.11089 5.14878 5.36456 5.41926 5.46829 5.50593 5.57859 5.59717 5.65312 6.04596 6.53633 6.87495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 C -0.069 4.069 4 C -0.089 4.089 5 C -0.037 4.037 6 C -0.119 4.119 7 C -0.085 4.085 8 C -0.367 4.367 9 Si 1.060 2.940 10 C -0.450 4.450 11 C -0.450 4.450 12 C -0.450 4.450 13 C -0.085 4.085 14 C -0.119 4.119 15 C 0.108 3.892 16 N -0.474 5.474 17 C 0.091 3.909 18 C -0.073 4.073 19 O -0.534 6.534 20 Si 0.960 3.040 21 H -0.240 1.240 22 H -0.252 1.252 23 H -0.256 1.256 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.139 0.861 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.161 0.839 42 H 0.124 0.876 43 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.170 3.141 -0.656 3.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.113 4.113 3 C -0.094 4.094 4 C -0.091 4.091 5 C -0.037 4.037 6 C -0.137 4.137 7 C -0.103 4.103 8 C -0.408 4.408 9 Si 1.251 2.749 10 C -0.557 4.557 11 C -0.558 4.558 12 C -0.558 4.558 13 C -0.103 4.103 14 C -0.137 4.137 15 C -0.050 4.050 16 N -0.183 5.183 17 C -0.046 4.046 18 C -0.184 4.184 19 O -0.339 6.339 20 Si 0.780 3.220 21 H -0.163 1.163 22 H -0.175 1.175 23 H -0.180 1.180 24 H 0.097 0.903 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.157 0.843 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.178 0.822 42 H 0.142 0.858 43 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 0.200 1.791 -1.297 2.220 hybrid contribution -0.044 1.062 0.346 1.118 sum 0.155 2.853 -0.951 3.011 Atomic orbital electron populations 1.20906 0.89762 1.03929 1.03161 1.20607 0.97805 0.92827 1.00096 1.21612 0.93022 0.98403 0.96350 1.19827 0.93626 0.94078 1.01527 1.18616 0.92986 0.91494 1.00631 1.21279 0.99791 0.91977 1.00675 1.21026 0.94067 0.97807 0.97429 1.27477 1.00840 1.10627 1.01868 0.78181 0.65773 0.63466 0.67452 1.26128 1.05061 1.05722 1.18769 1.26139 1.08649 1.12756 1.08211 1.26135 1.16378 1.05025 1.08216 1.21030 0.99794 0.92103 0.97336 1.21293 0.92866 0.98934 1.00592 1.22818 1.00193 0.86492 0.95485 1.67256 1.07178 1.31674 1.12196 1.21586 0.90197 0.95655 0.97164 1.25106 1.03486 0.92819 0.96955 1.86488 1.32230 1.78044 1.37124 0.85525 0.81727 0.78884 0.75912 1.16264 1.17507 1.18006 0.90299 0.90072 0.90894 0.84284 0.86093 0.85868 0.91179 0.91018 0.91160 0.91049 0.90927 0.91183 0.91150 0.90932 0.91040 0.85789 0.85867 0.82197 0.85809 0.77080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.17 9.13 36.01 0.33 0.49 16 2 C -0.11 -0.12 5.89 -104.53 -0.62 -0.74 16 3 C -0.07 -0.06 9.19 -38.95 -0.36 -0.42 16 4 C -0.09 -0.14 5.89 -104.75 -0.62 -0.76 16 5 C -0.04 -0.05 5.88 -104.90 -0.62 -0.66 16 6 C -0.12 -0.07 9.44 -39.25 -0.37 -0.44 16 7 C -0.09 0.01 9.28 -39.63 -0.37 -0.36 16 8 C -0.37 0.21 4.60 -39.52 -0.18 0.03 16 9 Si 1.06 -3.00 12.31 -169.99 -2.09 -5.09 16 10 C -0.45 0.78 8.65 101.05 0.87 1.66 16 11 C -0.45 0.94 8.52 101.05 0.86 1.80 16 12 C -0.45 0.93 8.52 101.05 0.86 1.79 16 13 C -0.08 0.01 9.28 -39.63 -0.37 -0.36 16 14 C -0.12 -0.07 9.44 -39.25 -0.37 -0.44 16 15 C 0.11 0.20 10.60 -17.19 -0.18 0.02 16 16 N -0.47 -1.36 9.19 -9.20 -0.08 -1.44 16 17 C 0.09 0.19 5.35 -82.54 -0.44 -0.25 16 18 C -0.07 -0.06 2.60 36.00 0.09 0.03 16 19 O -0.53 -0.92 12.88 -35.23 -0.45 -1.38 16 20 Si 0.96 1.07 27.70 -169.99 -4.71 -3.64 16 21 H -0.24 -0.55 7.11 56.52 0.40 -0.14 16 22 H -0.25 -0.42 7.11 56.52 0.40 -0.02 16 23 H -0.26 -0.50 7.11 56.52 0.40 -0.10 16 24 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 25 H 0.08 -0.12 6.58 -51.93 -0.34 -0.46 16 26 H 0.07 -0.16 8.06 -51.93 -0.42 -0.58 16 27 H 0.14 -0.16 6.33 -52.49 -0.33 -0.50 16 28 H 0.12 -0.13 6.28 -52.49 -0.33 -0.46 16 29 H 0.12 -0.26 7.40 -52.48 -0.39 -0.64 16 30 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 31 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 32 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 33 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 34 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 35 H 0.07 -0.16 7.67 -51.93 -0.40 -0.56 16 36 H 0.07 -0.16 7.67 -51.93 -0.40 -0.56 16 37 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 38 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 39 H 0.12 -0.26 7.40 -52.49 -0.39 -0.65 16 40 H 0.12 -0.14 6.24 -52.49 -0.33 -0.47 16 41 H 0.16 -0.05 6.23 -52.48 -0.33 -0.38 16 42 H 0.12 -0.11 5.56 -51.93 -0.29 -0.40 16 43 H 0.38 -0.16 8.70 45.56 0.40 0.23 16 LS Contribution 353.63 15.07 5.33 5.33 Total: 0.00 -5.79 353.63 -9.13 -14.92 By element: Atomic # 1 Polarization: -4.44 SS G_CDS: -5.65 Total: -10.10 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -1.47 Total: 1.39 kcal Atomic # 7 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.44 kcal Atomic # 8 Polarization: -0.92 SS G_CDS: -0.45 Total: -1.38 kcal Atomic # 14 Polarization: -1.93 SS G_CDS: -6.80 Total: -8.73 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -5.79 -9.13 -14.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_13614048.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.748 kcal (2) G-P(sol) polarization free energy of solvation -5.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds