Wall clock time and date at job start Mon Mar 8 2021 09:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38413 * 120.35689 * 2 1 4 4 C 1.39767 * 118.31340 * 180.02562 * 3 2 1 5 5 C 1.48395 * 120.53639 * 180.02562 * 4 3 2 6 6 C 1.39331 * 120.11938 * 359.70167 * 5 4 3 7 7 C 1.38022 * 119.87622 * 179.74707 * 6 5 4 8 8 C 1.38327 * 120.12003 * 0.55119 * 7 6 5 9 9 Si 1.86799 * 119.87950 * 179.72058 * 8 7 6 10 10 C 1.86303 * 109.47037 * 269.97923 * 9 8 7 11 11 C 1.86302 * 109.47015 * 29.97675 * 9 8 7 12 12 C 1.86301 * 109.47018 * 149.97731 * 9 8 7 13 13 C 1.38319 * 120.24014 * 359.70179 * 8 7 6 14 14 C 1.38017 * 120.12376 * 0.02562 * 13 8 7 15 15 C 1.39295 * 118.92287 * 359.97438 * 4 3 2 16 16 N 1.31748 * 120.60011 * 0.25494 * 15 4 3 17 17 C 1.31883 * 121.85247 * 359.47816 * 16 15 4 18 18 C 1.50697 * 119.48661 * 180.24688 * 17 16 15 19 19 O 1.42894 * 109.47256 * 67.70873 * 18 17 16 20 20 Si 1.86292 * 109.47257 * 307.70592 * 18 17 16 21 21 H 1.48503 * 109.47135 * 59.99997 * 20 18 17 22 22 H 1.48498 * 109.47447 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47266 * 300.00316 * 20 18 17 24 24 H 1.09000 * 109.47159 * 95.75232 * 1 2 3 25 25 H 1.09006 * 109.46628 * 215.75270 * 1 2 3 26 26 H 1.08996 * 109.47212 * 335.74749 * 1 2 3 27 27 H 1.08002 * 120.84597 * 0.04187 * 3 2 1 28 28 H 1.07999 * 120.06421 * 0.02562 * 6 5 4 29 29 H 1.08005 * 119.94319 * 180.27005 * 7 6 5 30 30 H 1.08997 * 109.47171 * 60.00227 * 10 9 8 31 31 H 1.09006 * 109.46654 * 180.02562 * 10 9 8 32 32 H 1.09001 * 109.46994 * 299.99647 * 10 9 8 33 33 H 1.09004 * 109.46926 * 59.99768 * 11 9 8 34 34 H 1.08997 * 109.46837 * 179.97438 * 11 9 8 35 35 H 1.09000 * 109.47116 * 300.00256 * 11 9 8 36 36 H 1.08995 * 109.46983 * 60.00133 * 12 9 8 37 37 H 1.08996 * 109.46869 * 180.02562 * 12 9 8 38 38 H 1.08994 * 109.47113 * 300.00273 * 12 9 8 39 39 H 1.07999 * 119.93503 * 180.02562 * 13 8 7 40 40 H 1.08000 * 120.06031 * 180.02562 * 14 13 8 41 41 H 1.08003 * 119.69728 * 179.97438 * 15 4 3 42 42 H 1.09004 * 109.47082 * 187.70944 * 18 17 16 43 43 H 0.96700 * 114.00096 * 300.00291 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2066 1.1944 0.0000 4 6 3.6034 1.1445 -0.0006 5 6 4.4024 2.3950 0.0000 6 6 3.7634 3.6331 -0.0052 7 6 4.5115 4.7929 0.0006 8 6 5.8932 4.7277 0.0001 9 14 6.8991 6.3018 0.0001 10 6 7.2334 6.8251 -1.7564 11 6 5.9518 7.6441 0.8784 12 6 8.5153 6.0059 0.8782 13 6 6.5327 3.5013 -0.0001 14 6 5.7945 2.3351 -0.0002 15 6 4.2331 -0.0979 -0.0005 16 7 3.5248 -1.2088 -0.0050 17 6 2.2061 -1.1935 0.0005 18 6 1.4491 -2.4965 0.0005 19 8 1.6569 -3.1681 1.2446 20 14 2.0603 -3.5698 -1.3941 21 1 3.5094 -3.8392 -1.2131 22 1 1.3139 -4.8536 -1.3945 23 1 1.8443 -2.8719 -2.6870 24 1 -0.3633 -0.1030 -1.0225 25 1 -0.3633 -0.8341 0.6005 26 1 -0.3633 0.9369 0.4221 27 1 1.6863 2.1408 0.0007 28 1 2.6846 3.6851 -0.0092 29 1 4.0172 5.7532 0.0010 30 1 6.2878 6.9982 -2.2702 31 1 7.8208 7.7434 -1.7564 32 1 7.7877 6.0397 -2.2703 33 1 5.7561 7.3379 1.9060 34 1 6.5389 8.5624 0.8787 35 1 5.0061 7.8172 0.3646 36 1 9.0695 5.2205 0.3644 37 1 9.1020 6.9244 0.8786 38 1 8.3197 5.6996 1.9058 39 1 7.6118 3.4561 -0.0001 40 1 6.2949 1.3780 0.0001 41 1 5.3118 -0.1510 -0.0014 42 1 0.3855 -2.2988 -0.1324 43 1 2.5830 -3.3761 1.4294 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_13614048.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:21:05 Heat of formation + Delta-G solvation = -20.435678 kcal Electronic energy + Delta-G solvation = -21368.880420 eV Core-core repulsion = 18308.900259 eV Total energy + Delta-G solvation = -3059.980161 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 301.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.75245 -39.79691 -37.74211 -34.86349 -34.39449 -31.97612 -30.70282 -29.36943 -28.59948 -28.26972 -28.26092 -27.15073 -24.28939 -23.79421 -22.59267 -21.52935 -18.89527 -18.09887 -17.86773 -17.07522 -16.33571 -15.85514 -15.59334 -15.26771 -15.09742 -14.91577 -14.68561 -14.52174 -14.11999 -14.04963 -13.91979 -13.79118 -13.69843 -13.68113 -13.55683 -13.29069 -13.12025 -13.10438 -12.96183 -12.84364 -12.44183 -12.29679 -11.94344 -11.75252 -11.34681 -10.91574 -10.77292 -10.75358 -10.70877 -10.34830 -10.11454 -9.83665 -9.05670 -0.58235 0.14124 0.52576 0.68382 1.14999 1.43897 1.52900 1.84763 1.91051 2.03035 2.10296 2.58646 2.67101 3.03319 3.06549 3.48122 3.55167 3.61270 3.79836 3.81876 4.03038 4.09052 4.19955 4.40809 4.46864 4.57527 4.59952 4.72019 4.77775 4.84546 4.84909 4.88691 4.89560 4.90099 4.90704 4.95446 5.02688 5.13050 5.15084 5.17591 5.40334 5.57511 5.58951 5.60850 5.64258 5.68126 5.71410 6.10596 6.52582 6.79427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.116 4.116 3 C -0.077 4.077 4 C -0.093 4.093 5 C -0.054 4.054 6 C -0.131 4.131 7 C -0.097 4.097 8 C -0.378 4.378 9 Si 1.128 2.872 10 C -0.464 4.464 11 C -0.462 4.462 12 C -0.463 4.463 13 C -0.097 4.097 14 C -0.133 4.133 15 C 0.092 3.908 16 N -0.492 5.492 17 C 0.072 3.928 18 C -0.070 4.070 19 O -0.545 6.545 20 Si 0.989 3.011 21 H -0.261 1.261 22 H -0.258 1.258 23 H -0.268 1.268 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.158 0.842 28 H 0.133 0.867 29 H 0.142 0.858 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.141 0.859 40 H 0.132 0.868 41 H 0.172 0.828 42 H 0.143 0.857 43 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.246 4.177 -0.574 4.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.118 4.118 3 C -0.102 4.102 4 C -0.095 4.095 5 C -0.055 4.055 6 C -0.149 4.149 7 C -0.115 4.115 8 C -0.417 4.417 9 Si 1.315 2.685 10 C -0.570 4.570 11 C -0.569 4.569 12 C -0.570 4.570 13 C -0.115 4.115 14 C -0.150 4.150 15 C -0.066 4.066 16 N -0.202 5.202 17 C -0.065 4.065 18 C -0.180 4.180 19 O -0.351 6.351 20 Si 0.812 3.188 21 H -0.185 1.185 22 H -0.182 1.182 23 H -0.193 1.193 24 H 0.110 0.890 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.175 0.825 28 H 0.151 0.849 29 H 0.159 0.841 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.158 0.842 40 H 0.150 0.850 41 H 0.189 0.811 42 H 0.160 0.840 43 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -0.222 2.813 -1.217 3.073 hybrid contribution 0.132 0.770 0.306 0.839 sum -0.090 3.582 -0.911 3.697 Atomic orbital electron populations 1.20984 0.87983 1.04671 1.04140 1.20917 0.99172 0.92465 0.99220 1.21895 0.92938 0.99259 0.96087 1.19975 0.94182 0.94146 1.01206 1.18754 0.93395 0.91675 1.01686 1.21535 1.00677 0.92033 1.00634 1.21352 0.94473 0.98425 0.97255 1.28044 1.01177 1.11660 1.00807 0.77149 0.64152 0.61387 0.65831 1.26302 1.04996 1.05872 1.19821 1.26278 1.09123 1.13268 1.08262 1.26289 1.17196 1.05264 1.08274 1.21341 1.00790 0.92113 0.97256 1.21543 0.92980 0.99835 1.00690 1.23071 1.00903 0.86612 0.96007 1.67246 1.07845 1.32268 1.12821 1.21828 0.90205 0.96530 0.97905 1.25145 1.04433 0.92176 0.96281 1.86456 1.33011 1.78140 1.37518 0.85107 0.80054 0.78270 0.75415 1.18531 1.18186 1.19275 0.88979 0.89828 0.89774 0.82458 0.84887 0.84068 0.91403 0.90723 0.91471 0.91297 0.90713 0.90834 0.90915 0.90718 0.91314 0.84160 0.84987 0.81092 0.83985 0.76319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.44 9.13 71.24 0.65 1.09 16 2 C -0.12 -0.26 5.89 -19.80 -0.12 -0.38 16 3 C -0.08 -0.16 9.19 22.68 0.21 0.05 16 4 C -0.09 -0.38 5.89 -19.95 -0.12 -0.50 16 5 C -0.05 -0.18 5.88 -20.04 -0.12 -0.30 16 6 C -0.13 -0.17 9.44 22.48 0.21 0.04 16 7 C -0.10 0.05 9.28 22.24 0.21 0.26 16 8 C -0.38 0.54 4.60 22.31 0.10 0.65 16 9 Si 1.13 -7.14 12.31 68.60 0.84 -6.30 16 10 C -0.46 1.84 8.65 113.37 0.98 2.82 16 11 C -0.46 2.30 8.52 113.37 0.97 3.27 16 12 C -0.46 2.18 8.52 113.37 0.97 3.15 16 13 C -0.10 0.01 9.28 22.24 0.21 0.22 16 14 C -0.13 -0.25 9.44 22.48 0.21 -0.04 16 15 C 0.09 0.46 10.60 84.96 0.90 1.36 16 16 N -0.49 -3.44 9.19 -183.02 -1.68 -5.12 16 17 C 0.07 0.35 5.35 42.57 0.23 0.58 16 18 C -0.07 -0.14 2.60 71.23 0.18 0.04 16 19 O -0.55 -2.12 12.88 -148.98 -1.92 -4.04 16 20 Si 0.99 3.08 27.70 68.60 1.90 4.98 16 21 H -0.26 -1.65 7.11 99.48 0.71 -0.95 16 22 H -0.26 -1.00 7.11 99.48 0.71 -0.29 16 23 H -0.27 -1.30 7.11 99.48 0.71 -0.59 16 24 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 25 H 0.08 -0.33 6.58 -2.38 -0.02 -0.34 16 26 H 0.08 -0.48 8.06 -2.39 -0.02 -0.50 16 27 H 0.16 -0.44 6.33 -2.91 -0.02 -0.46 16 28 H 0.13 -0.31 6.28 -2.91 -0.02 -0.33 16 29 H 0.14 -0.71 7.40 -2.91 -0.02 -0.73 16 30 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 31 H 0.07 -0.33 7.96 -2.38 -0.02 -0.35 16 32 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 33 H 0.07 -0.29 7.96 -2.38 -0.02 -0.31 16 34 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 35 H 0.07 -0.41 7.67 -2.39 -0.02 -0.43 16 36 H 0.07 -0.37 7.67 -2.39 -0.02 -0.39 16 37 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 38 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 39 H 0.14 -0.62 7.40 -2.91 -0.02 -0.64 16 40 H 0.13 -0.16 6.24 -2.91 -0.02 -0.18 16 41 H 0.17 0.16 6.23 -2.91 -0.02 0.15 16 42 H 0.14 -0.32 5.56 -2.38 -0.01 -0.34 16 43 H 0.39 0.06 8.70 -74.06 -0.64 -0.58 16 Total: 0.00 -13.50 353.63 5.94 -7.56 By element: Atomic # 1 Polarization: -10.52 SS G_CDS: 1.12 Total: -9.40 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 5.67 Total: 12.32 kcal Atomic # 7 Polarization: -3.44 SS G_CDS: -1.68 Total: -5.12 kcal Atomic # 8 Polarization: -2.12 SS G_CDS: -1.92 Total: -4.04 kcal Atomic # 14 Polarization: -4.06 SS G_CDS: 2.74 Total: -1.31 kcal Total: -13.50 5.94 -7.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_13614048.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.877 kcal (2) G-P(sol) polarization free energy of solvation -13.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds