Wall clock time and date at job start Mon Mar 8 2021 09:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86295 * 109.47363 * 2 1 4 4 C 1.86300 * 109.46962 * 239.99888 * 2 1 3 5 5 C 1.86806 * 109.47118 * 120.00199 * 2 1 3 6 6 C 1.38319 * 119.87743 * 89.99179 * 5 2 1 7 7 C 1.38019 * 120.12045 * 179.97438 * 6 5 2 8 8 C 1.39343 * 119.87401 * 0.02562 * 7 6 5 9 9 C 1.48402 * 120.11887 * 179.97438 * 8 7 6 10 10 C 1.39343 * 120.09053 * 303.66075 * 9 8 7 11 11 C 1.38070 * 119.98394 * 179.97438 * 10 9 8 12 12 C 1.38206 * 120.18208 * 359.97438 * 11 10 9 13 13 C 1.38833 * 120.18658 * 359.73139 * 12 11 10 14 14 O 1.35908 * 119.99627 * 180.29699 * 13 12 11 15 15 C 1.42904 * 117.00005 * 0.25294 * 14 13 12 16 16 F 1.39908 * 109.46665 * 299.99833 * 15 14 13 17 17 F 1.39902 * 109.47365 * 59.99723 * 15 14 13 18 18 C 1.38495 * 120.00862 * 0.54342 * 13 12 11 19 19 C 1.50707 * 120.09150 * 179.72453 * 18 13 12 20 20 O 1.42898 * 109.46915 * 53.00518 * 19 18 13 21 21 Si 1.86297 * 109.46959 * 293.00867 * 19 18 13 22 22 H 1.48504 * 109.46930 * 185.64624 * 21 19 18 23 23 H 1.48500 * 109.47417 * 305.64333 * 21 19 18 24 24 H 1.48493 * 109.47328 * 65.64445 * 21 19 18 25 25 C 1.39335 * 119.76062 * 0.25043 * 8 7 6 26 26 C 1.38015 * 119.87635 * 359.51358 * 25 8 7 27 27 H 1.09005 * 109.46681 * 300.00333 * 1 2 3 28 28 H 1.09002 * 109.46533 * 59.99952 * 1 2 3 29 29 H 1.08996 * 109.47015 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46925 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46969 * 299.99955 * 3 2 1 32 32 H 1.08996 * 109.47284 * 60.00249 * 3 2 1 33 33 H 1.09003 * 109.46960 * 300.00161 * 4 2 1 34 34 H 1.08993 * 109.47211 * 60.00106 * 4 2 1 35 35 H 1.09002 * 109.47114 * 180.02562 * 4 2 1 36 36 H 1.08003 * 119.94479 * 359.97438 * 6 5 2 37 37 H 1.07998 * 120.06776 * 180.02562 * 7 6 5 38 38 H 1.08000 * 120.00711 * 359.95120 * 10 9 8 39 39 H 1.07998 * 119.91056 * 180.02562 * 11 10 9 40 40 H 1.07996 * 119.90721 * 180.02562 * 12 11 10 41 41 H 1.08997 * 109.46942 * 179.97438 * 15 14 13 42 42 H 1.08997 * 109.47300 * 173.00740 * 19 18 13 43 43 H 0.96699 * 114.00049 * 65.64993 * 20 19 18 44 44 H 1.08000 * 120.05801 * 179.75027 * 25 8 7 45 45 H 1.08000 * 119.93731 * 180.20996 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4857 -0.8807 1.5252 6 6 2.7152 -2.2442 1.4882 7 6 3.1758 -2.8998 2.6120 8 6 3.4090 -2.1856 3.7855 9 6 3.9037 -2.8852 4.9972 10 6 3.1904 -3.9604 5.5232 11 6 3.6529 -4.6100 6.6503 12 6 4.8229 -4.1973 7.2592 13 6 5.5427 -3.1307 6.7378 14 8 6.6959 -2.7319 7.3361 15 6 7.1109 -3.4589 8.4944 16 9 6.1237 -3.3663 9.4814 17 9 7.3078 -4.8021 8.1563 18 6 5.0829 -2.4698 5.6108 19 6 5.8595 -1.3079 5.0468 20 8 7.2161 -1.7016 4.8311 21 14 5.8093 0.1145 6.2488 22 1 6.4563 1.3028 5.6368 23 1 4.3972 0.4346 6.5784 24 1 6.5344 -0.2600 7.4894 25 6 3.1706 -0.8132 3.8188 26 6 2.7147 -0.1669 2.6877 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.5741 1.7563 -0.0005 31 1 2.1208 2.2702 -0.8900 32 1 2.1208 2.2702 0.8900 33 1 2.1206 -1.9059 -1.5211 34 1 2.1207 -0.3645 -2.4111 35 1 3.5740 -0.8787 -1.5209 36 1 2.5337 -2.7969 0.5782 37 1 3.3551 -3.9644 2.5819 38 1 2.2757 -4.2853 5.0496 39 1 3.0993 -5.4435 7.0568 40 1 5.1809 -4.7088 8.1404 41 1 8.0433 -3.0392 8.8720 42 1 5.4157 -0.9995 4.1002 43 1 7.3253 -2.3801 4.1508 44 1 3.3459 -0.2556 4.7270 45 1 2.5329 0.8974 2.7115 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_14048408.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:21:11 Heat of formation + Delta-G solvation = -173.602900 kcal Electronic energy + Delta-G solvation = -29262.262811 eV Core-core repulsion = 25003.476588 eV Total energy + Delta-G solvation = -4258.786222 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 352.122 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.34129 -48.32343 -41.55954 -39.98271 -38.30804 -37.43125 -33.71842 -32.26708 -31.71422 -29.99769 -29.37459 -28.47259 -28.43219 -27.35454 -26.64126 -24.24175 -23.40158 -22.62748 -21.96143 -19.84918 -19.21204 -18.91043 -18.20463 -17.66180 -17.34539 -16.80850 -16.40754 -15.97888 -15.83171 -15.57804 -15.46339 -15.13502 -14.92170 -14.65253 -14.62255 -14.43819 -14.31886 -14.22171 -14.18992 -14.03964 -13.87589 -13.70477 -13.57733 -13.30576 -13.28298 -13.19801 -13.12490 -12.88197 -12.82724 -12.25412 -12.24344 -11.99442 -11.79672 -11.31548 -11.14972 -10.98109 -10.92870 -10.82989 -10.09595 -9.82407 -9.47613 -9.25131 -0.19118 0.22045 0.49636 0.50955 1.25020 1.43694 1.60879 1.67905 1.72419 1.82376 1.92257 2.09043 2.46957 2.52011 2.57405 2.89829 3.29750 3.50134 3.57695 3.63423 3.80641 3.96771 3.99367 4.05179 4.10919 4.18438 4.40081 4.45881 4.51728 4.62089 4.68006 4.69084 4.72406 4.73484 4.73830 4.74268 4.78150 4.90636 5.10011 5.15580 5.25196 5.29529 5.39458 5.42037 5.48355 5.51825 5.56563 5.59311 5.61462 6.00383 6.06286 6.64296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.059 2.941 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.366 4.366 6 C -0.085 4.085 7 C -0.112 4.112 8 C -0.041 4.041 9 C -0.006 4.006 10 C -0.129 4.129 11 C -0.075 4.075 12 C -0.190 4.190 13 C 0.125 3.875 14 O -0.301 6.301 15 C 0.407 3.593 16 F -0.199 7.199 17 F -0.198 7.198 18 C -0.130 4.130 19 C -0.083 4.083 20 O -0.530 6.530 21 Si 0.994 3.006 22 H -0.249 1.249 23 H -0.250 1.250 24 H -0.238 1.238 25 C -0.122 4.122 26 C -0.086 4.086 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.183 0.817 42 H 0.082 0.918 43 H 0.366 0.634 44 H 0.120 0.880 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.023 0.333 -1.936 2.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.250 2.750 3 C -0.558 4.558 4 C -0.557 4.557 5 C -0.407 4.407 6 C -0.103 4.103 7 C -0.130 4.130 8 C -0.041 4.041 9 C -0.006 4.006 10 C -0.148 4.148 11 C -0.093 4.093 12 C -0.208 4.208 13 C 0.081 3.919 14 O -0.218 6.218 15 C 0.317 3.683 16 F -0.181 7.181 17 F -0.180 7.180 18 C -0.131 4.131 19 C -0.191 4.191 20 O -0.334 6.334 21 Si 0.813 3.187 22 H -0.173 1.173 23 H -0.174 1.174 24 H -0.161 1.161 25 C -0.140 4.140 26 C -0.104 4.104 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.154 0.846 41 H 0.199 0.801 42 H 0.100 0.900 43 H 0.212 0.788 44 H 0.138 0.862 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.801 1.538 -0.869 1.940 hybrid contribution -0.220 -1.485 -0.330 1.538 sum -1.021 0.053 -1.200 1.576 Atomic orbital electron populations 1.26126 1.20456 1.04580 1.04507 0.78198 0.66889 0.66168 0.63715 1.26138 1.06516 1.18529 1.04605 1.26136 1.06479 1.08036 1.15079 1.27459 1.03554 0.99508 1.10206 1.21035 0.96980 0.94592 0.97685 1.21268 0.99628 0.99719 0.92399 1.18662 0.99664 0.93301 0.92464 1.18474 0.93274 0.94964 0.93900 1.21213 1.00562 0.95881 0.97096 1.20955 0.94818 0.98862 0.94675 1.21639 0.97949 0.98422 1.02833 1.18463 0.85937 0.94690 0.92799 1.86827 1.38839 1.55296 1.40811 1.23470 0.90750 0.76626 0.77421 1.93103 1.66244 1.95700 1.63051 1.93104 1.95293 1.37379 1.92177 1.19644 0.97358 1.00463 0.95617 1.25308 0.84277 1.02348 1.07154 1.86720 1.22987 1.61435 1.62282 0.84728 0.80612 0.74919 0.78490 1.17265 1.17393 1.16125 1.21367 1.00169 0.93541 0.98934 1.21038 0.97061 0.99839 0.92454 0.91155 0.91037 0.91173 0.90994 0.90942 0.91132 0.91182 0.90949 0.91032 0.85837 0.85982 0.85081 0.84877 0.84556 0.80097 0.89983 0.78751 0.86210 0.85724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.80 8.65 101.05 0.87 1.67 16 2 Si 1.06 -3.05 12.31 -169.99 -2.09 -5.14 16 3 C -0.45 0.95 8.53 101.05 0.86 1.81 16 4 C -0.45 0.97 8.52 101.05 0.86 1.83 16 5 C -0.37 0.27 4.60 -39.52 -0.18 0.09 16 6 C -0.09 0.03 9.28 -39.63 -0.37 -0.34 16 7 C -0.11 -0.06 9.62 -39.25 -0.38 -0.43 16 8 C -0.04 -0.05 4.57 -104.89 -0.48 -0.53 16 9 C -0.01 -0.01 5.40 -104.92 -0.57 -0.58 16 10 C -0.13 -0.14 9.62 -39.23 -0.38 -0.52 16 11 C -0.08 -0.08 10.03 -39.65 -0.40 -0.48 16 12 C -0.19 -0.43 8.25 -39.37 -0.32 -0.75 16 13 C 0.12 0.36 5.92 -39.27 -0.23 0.13 16 14 O -0.30 -0.73 7.41 -33.75 -0.25 -0.98 16 15 C 0.41 0.01 5.98 101.05 0.60 0.61 16 16 F -0.20 -0.29 15.56 2.25 0.04 -0.25 16 17 F -0.20 -0.27 15.59 2.25 0.04 -0.23 16 18 C -0.13 -0.32 4.45 -104.14 -0.46 -0.78 16 19 C -0.08 -0.15 2.15 36.01 0.08 -0.08 16 20 O -0.53 -1.05 11.71 -49.53 -0.58 -1.63 16 21 Si 0.99 2.25 25.58 -169.99 -4.35 -2.10 16 22 H -0.25 -0.61 7.11 56.52 0.40 -0.21 16 23 H -0.25 -0.46 6.83 56.52 0.39 -0.07 16 24 H -0.24 -0.72 6.59 56.52 0.37 -0.35 16 25 C -0.12 -0.13 7.67 -39.26 -0.30 -0.43 16 26 C -0.09 0.00 9.28 -39.63 -0.37 -0.36 16 27 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 29 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 30 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 31 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 32 H 0.07 -0.16 7.67 -51.93 -0.40 -0.56 16 33 H 0.07 -0.16 7.67 -51.93 -0.40 -0.56 16 34 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 35 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 36 H 0.12 -0.27 7.40 -52.48 -0.39 -0.66 16 37 H 0.12 -0.07 8.06 -52.49 -0.42 -0.49 16 38 H 0.13 -0.06 8.06 -52.49 -0.42 -0.48 16 39 H 0.13 -0.14 8.06 -52.49 -0.42 -0.56 16 40 H 0.14 0.25 5.08 -52.49 -0.27 -0.01 16 41 H 0.18 -0.77 8.14 -51.93 -0.42 -1.19 16 42 H 0.08 0.08 5.10 -51.93 -0.26 -0.18 16 43 H 0.37 -0.26 9.11 45.56 0.42 0.15 16 44 H 0.12 0.08 6.00 -52.49 -0.32 -0.24 16 45 H 0.12 -0.25 7.40 -52.49 -0.39 -0.64 16 LS Contribution 374.68 15.07 5.65 5.65 Total: 0.00 -5.57 374.68 -8.14 -13.71 By element: Atomic # 1 Polarization: -4.45 SS G_CDS: -5.43 Total: -9.88 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -1.16 Total: 0.86 kcal Atomic # 8 Polarization: -1.79 SS G_CDS: -0.83 Total: -2.62 kcal Atomic # 9 Polarization: -0.55 SS G_CDS: 0.07 Total: -0.48 kcal Atomic # 14 Polarization: -0.80 SS G_CDS: -6.44 Total: -7.24 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -5.57 -8.14 -13.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_14048408.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.889 kcal (2) G-P(sol) polarization free energy of solvation -5.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds