Wall clock time and date at job start Mon Mar 8 2021 09:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86295 * 109.47363 * 2 1 4 4 C 1.86300 * 109.46962 * 239.99888 * 2 1 3 5 5 C 1.86806 * 109.47118 * 120.00199 * 2 1 3 6 6 C 1.38319 * 119.87743 * 89.99179 * 5 2 1 7 7 C 1.38019 * 120.12045 * 179.97438 * 6 5 2 8 8 C 1.39343 * 119.87401 * 0.02562 * 7 6 5 9 9 C 1.48402 * 120.11887 * 179.97438 * 8 7 6 10 10 C 1.39343 * 120.09053 * 303.66075 * 9 8 7 11 11 C 1.38070 * 119.98394 * 179.97438 * 10 9 8 12 12 C 1.38206 * 120.18208 * 359.97438 * 11 10 9 13 13 C 1.38833 * 120.18658 * 359.73139 * 12 11 10 14 14 O 1.35908 * 119.99627 * 180.29699 * 13 12 11 15 15 C 1.42904 * 117.00005 * 0.25294 * 14 13 12 16 16 F 1.39908 * 109.46665 * 299.99833 * 15 14 13 17 17 F 1.39902 * 109.47365 * 59.99723 * 15 14 13 18 18 C 1.38495 * 120.00862 * 0.54342 * 13 12 11 19 19 C 1.50707 * 120.09150 * 179.72453 * 18 13 12 20 20 O 1.42898 * 109.46915 * 53.00518 * 19 18 13 21 21 Si 1.86297 * 109.46959 * 293.00867 * 19 18 13 22 22 H 1.48504 * 109.46930 * 185.64624 * 21 19 18 23 23 H 1.48500 * 109.47417 * 305.64333 * 21 19 18 24 24 H 1.48493 * 109.47328 * 65.64445 * 21 19 18 25 25 C 1.39335 * 119.76062 * 0.25043 * 8 7 6 26 26 C 1.38015 * 119.87635 * 359.51358 * 25 8 7 27 27 H 1.09005 * 109.46681 * 300.00333 * 1 2 3 28 28 H 1.09002 * 109.46533 * 59.99952 * 1 2 3 29 29 H 1.08996 * 109.47015 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46925 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46969 * 299.99955 * 3 2 1 32 32 H 1.08996 * 109.47284 * 60.00249 * 3 2 1 33 33 H 1.09003 * 109.46960 * 300.00161 * 4 2 1 34 34 H 1.08993 * 109.47211 * 60.00106 * 4 2 1 35 35 H 1.09002 * 109.47114 * 180.02562 * 4 2 1 36 36 H 1.08003 * 119.94479 * 359.97438 * 6 5 2 37 37 H 1.07998 * 120.06776 * 180.02562 * 7 6 5 38 38 H 1.08000 * 120.00711 * 359.95120 * 10 9 8 39 39 H 1.07998 * 119.91056 * 180.02562 * 11 10 9 40 40 H 1.07996 * 119.90721 * 180.02562 * 12 11 10 41 41 H 1.08997 * 109.46942 * 179.97438 * 15 14 13 42 42 H 1.08997 * 109.47300 * 173.00740 * 19 18 13 43 43 H 0.96699 * 114.00049 * 65.64993 * 20 19 18 44 44 H 1.08000 * 120.05801 * 179.75027 * 25 8 7 45 45 H 1.08000 * 119.93731 * 180.20996 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4857 -0.8807 1.5252 6 6 2.7152 -2.2442 1.4882 7 6 3.1758 -2.8998 2.6120 8 6 3.4090 -2.1856 3.7855 9 6 3.9037 -2.8852 4.9972 10 6 3.1904 -3.9604 5.5232 11 6 3.6529 -4.6100 6.6503 12 6 4.8229 -4.1973 7.2592 13 6 5.5427 -3.1307 6.7378 14 8 6.6959 -2.7319 7.3361 15 6 7.1109 -3.4589 8.4944 16 9 6.1237 -3.3663 9.4814 17 9 7.3078 -4.8021 8.1563 18 6 5.0829 -2.4698 5.6108 19 6 5.8595 -1.3079 5.0468 20 8 7.2161 -1.7016 4.8311 21 14 5.8093 0.1145 6.2488 22 1 6.4563 1.3028 5.6368 23 1 4.3972 0.4346 6.5784 24 1 6.5344 -0.2600 7.4894 25 6 3.1706 -0.8132 3.8188 26 6 2.7147 -0.1669 2.6877 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.5741 1.7563 -0.0005 31 1 2.1208 2.2702 -0.8900 32 1 2.1208 2.2702 0.8900 33 1 2.1206 -1.9059 -1.5211 34 1 2.1207 -0.3645 -2.4111 35 1 3.5740 -0.8787 -1.5209 36 1 2.5337 -2.7969 0.5782 37 1 3.3551 -3.9644 2.5819 38 1 2.2757 -4.2853 5.0496 39 1 3.0993 -5.4435 7.0568 40 1 5.1809 -4.7088 8.1404 41 1 8.0433 -3.0392 8.8720 42 1 5.4157 -0.9995 4.1002 43 1 7.3253 -2.3801 4.1508 44 1 3.3459 -0.2556 4.7270 45 1 2.5329 0.8974 2.7115 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_14048408.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:21:10 Heat of formation + Delta-G solvation = -163.209832 kcal Electronic energy + Delta-G solvation = -29261.812134 eV Core-core repulsion = 25003.476588 eV Total energy + Delta-G solvation = -4258.335545 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 352.122 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.38364 -48.37679 -41.63064 -39.98955 -38.36026 -37.54349 -33.75673 -32.29563 -31.71818 -29.96964 -29.24049 -28.27444 -28.24574 -27.38668 -26.71500 -24.26997 -23.38550 -22.69904 -21.98260 -19.90291 -19.25098 -18.96206 -18.26688 -17.66824 -17.43572 -16.85465 -16.49760 -16.01908 -15.82086 -15.63691 -15.54351 -15.20529 -15.00761 -14.72238 -14.61553 -14.47154 -14.35578 -14.20159 -14.02506 -13.92135 -13.71512 -13.68720 -13.53095 -13.19279 -13.13230 -13.09284 -12.94423 -12.92154 -12.85186 -12.36069 -12.28346 -12.15160 -11.85111 -11.42344 -11.19645 -10.87832 -10.74648 -10.73116 -10.13684 -9.80910 -9.55980 -9.29112 -0.24535 0.12220 0.48234 0.52103 1.10120 1.30435 1.43245 1.63730 1.86546 1.90616 2.05006 2.11202 2.47203 2.49768 2.69138 2.93028 3.38911 3.43870 3.54376 3.62421 3.74810 3.90727 3.99338 4.02861 4.12815 4.14610 4.33450 4.44834 4.52612 4.66682 4.71156 4.86885 4.87133 4.91003 4.91088 4.91973 4.92677 4.93977 5.08059 5.14532 5.21282 5.26179 5.33861 5.53113 5.58542 5.61242 5.62217 5.70391 5.73628 5.91846 6.11233 6.64409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.126 2.874 3 C -0.464 4.464 4 C -0.462 4.462 5 C -0.375 4.375 6 C -0.092 4.092 7 C -0.121 4.121 8 C -0.053 4.053 9 C -0.010 4.010 10 C -0.133 4.133 11 C -0.076 4.076 12 C -0.203 4.203 13 C 0.110 3.890 14 O -0.313 6.313 15 C 0.401 3.599 16 F -0.209 7.209 17 F -0.207 7.207 18 C -0.141 4.141 19 C -0.077 4.077 20 O -0.541 6.541 21 Si 0.998 3.002 22 H -0.253 1.253 23 H -0.248 1.248 24 H -0.251 1.251 25 C -0.137 4.137 26 C -0.095 4.095 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.142 0.858 37 H 0.129 0.871 38 H 0.146 0.854 39 H 0.153 0.847 40 H 0.136 0.864 41 H 0.225 0.775 42 H 0.089 0.911 43 H 0.376 0.624 44 H 0.118 0.882 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.410 0.277 -2.787 3.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.314 2.686 3 C -0.571 4.571 4 C -0.569 4.569 5 C -0.414 4.414 6 C -0.110 4.110 7 C -0.139 4.139 8 C -0.053 4.053 9 C -0.010 4.010 10 C -0.151 4.151 11 C -0.094 4.094 12 C -0.222 4.222 13 C 0.067 3.933 14 O -0.231 6.231 15 C 0.312 3.688 16 F -0.191 7.191 17 F -0.189 7.189 18 C -0.142 4.142 19 C -0.186 4.186 20 O -0.347 6.347 21 Si 0.817 3.183 22 H -0.177 1.177 23 H -0.172 1.172 24 H -0.175 1.175 25 C -0.155 4.155 26 C -0.113 4.113 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.160 0.840 37 H 0.147 0.853 38 H 0.164 0.836 39 H 0.171 0.829 40 H 0.154 0.846 41 H 0.240 0.760 42 H 0.107 0.893 43 H 0.225 0.775 44 H 0.136 0.864 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.191 1.476 -1.711 2.555 hybrid contribution -0.111 -1.473 -0.069 1.479 sum -1.302 0.003 -1.780 2.205 Atomic orbital electron populations 1.26301 1.21726 1.04470 1.04490 0.77170 0.65107 0.64620 0.61745 1.26299 1.06505 1.19479 1.04835 1.26274 1.06457 1.08508 1.15662 1.27997 1.02814 0.99655 1.10948 1.21343 0.96513 0.94993 0.98126 1.21435 0.99762 1.00191 0.92469 1.18717 1.00409 0.93523 0.92611 1.18649 0.93106 0.95134 0.94109 1.21431 1.00973 0.95652 0.97089 1.21226 0.94479 0.99217 0.94491 1.21758 0.98593 0.98667 1.03169 1.18665 0.86339 0.95097 0.93212 1.86803 1.38750 1.55928 1.41571 1.24188 0.91710 0.76247 0.76646 1.93077 1.66990 1.95710 1.63341 1.93079 1.95293 1.38246 1.92253 1.19753 0.97793 1.00792 0.95847 1.25205 0.84200 1.01976 1.07170 1.86677 1.23133 1.61959 1.62899 0.84694 0.80443 0.75030 0.78103 1.17667 1.17177 1.17479 1.21485 1.00911 0.93675 0.99428 1.21328 0.96800 1.00837 0.92345 0.91460 0.90795 0.91345 0.91199 0.90766 0.90912 0.90826 0.90787 0.91226 0.84001 0.85307 0.83639 0.82886 0.84624 0.75964 0.89334 0.77525 0.86449 0.84107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.97 8.65 113.37 0.98 2.96 16 2 Si 1.13 -7.49 12.31 68.60 0.84 -6.64 16 3 C -0.46 2.29 8.53 113.37 0.97 3.26 16 4 C -0.46 2.45 8.52 113.37 0.97 3.42 16 5 C -0.37 0.76 4.60 22.31 0.10 0.87 16 6 C -0.09 0.12 9.28 22.24 0.21 0.33 16 7 C -0.12 -0.11 9.62 22.48 0.22 0.10 16 8 C -0.05 -0.16 4.57 -20.04 -0.09 -0.25 16 9 C -0.01 -0.04 5.40 -20.05 -0.11 -0.15 16 10 C -0.13 -0.33 9.62 22.50 0.22 -0.11 16 11 C -0.08 -0.19 10.03 22.22 0.22 0.04 16 12 C -0.20 -1.11 8.25 22.40 0.18 -0.92 16 13 C 0.11 0.76 5.92 22.47 0.13 0.90 16 14 O -0.31 -1.82 7.41 -78.85 -0.58 -2.41 16 15 C 0.40 0.20 5.98 113.37 0.68 0.87 16 16 F -0.21 -0.77 15.56 44.97 0.70 -0.07 16 17 F -0.21 -0.69 15.59 44.97 0.70 0.01 16 18 C -0.14 -0.83 4.45 -19.55 -0.09 -0.92 16 19 C -0.08 -0.36 2.15 71.24 0.15 -0.20 16 20 O -0.54 -2.57 11.71 -135.31 -1.58 -4.16 16 21 Si 1.00 5.61 25.58 68.60 1.75 7.36 16 22 H -0.25 -1.48 7.11 99.48 0.71 -0.77 16 23 H -0.25 -1.20 6.83 99.48 0.68 -0.52 16 24 H -0.25 -1.89 6.59 99.48 0.66 -1.24 16 25 C -0.14 -0.36 7.67 22.48 0.17 -0.19 16 26 C -0.10 0.02 9.28 22.24 0.21 0.23 16 27 H 0.07 -0.23 7.96 -2.38 -0.02 -0.25 16 28 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 29 H 0.07 -0.26 7.96 -2.39 -0.02 -0.27 16 30 H 0.07 -0.30 7.96 -2.39 -0.02 -0.31 16 31 H 0.07 -0.38 7.96 -2.39 -0.02 -0.39 16 32 H 0.07 -0.38 7.67 -2.39 -0.02 -0.40 16 33 H 0.07 -0.43 7.67 -2.39 -0.02 -0.45 16 34 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 35 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 36 H 0.14 -0.80 7.40 -2.91 -0.02 -0.82 16 37 H 0.13 -0.16 8.06 -2.91 -0.02 -0.18 16 38 H 0.15 -0.16 8.06 -2.91 -0.02 -0.18 16 39 H 0.15 -0.37 8.06 -2.91 -0.02 -0.40 16 40 H 0.14 0.65 5.08 -2.91 -0.01 0.64 16 41 H 0.22 -2.01 8.14 -2.39 -0.02 -2.03 16 42 H 0.09 0.26 5.10 -2.39 -0.01 0.24 16 43 H 0.38 -0.26 9.11 -74.06 -0.67 -0.93 16 44 H 0.12 0.27 6.00 -2.91 -0.02 0.25 16 45 H 0.14 -0.62 7.40 -2.91 -0.02 -0.64 16 Total: 0.00 -13.42 374.68 7.97 -5.45 By element: Atomic # 1 Polarization: -10.79 SS G_CDS: 1.02 Total: -9.77 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 5.12 Total: 10.21 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -2.17 Total: -6.56 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 1.40 Total: -0.06 kcal Atomic # 14 Polarization: -1.88 SS G_CDS: 2.60 Total: 0.72 kcal Total: -13.42 7.97 -5.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_14048408.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.757 kcal (2) G-P(sol) polarization free energy of solvation -13.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds