Wall clock time and date at job start Mon Mar 8 2021 09:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86293 * 109.47053 * 2 1 4 4 C 1.86299 * 109.46780 * 239.99949 * 2 1 3 5 5 C 1.86800 * 109.46945 * 120.00232 * 2 1 3 6 6 C 1.38331 * 119.87498 * 90.00120 * 5 2 1 7 7 C 1.38003 * 120.12336 * 180.25581 * 6 5 2 8 8 C 1.39376 * 119.87301 * 359.48927 * 7 6 5 9 9 C 1.48321 * 120.12419 * 180.23505 * 8 7 6 10 10 C 1.39889 * 119.80630 * 179.97438 * 9 8 7 11 11 C 1.36391 * 120.40783 * 179.75468 * 10 9 8 12 12 C 1.39743 * 119.93178 * 0.51356 * 11 10 9 13 13 C 1.46437 * 133.86313 * 179.73700 * 12 11 10 14 14 C 1.50701 * 126.48807 * 359.97438 * 13 12 11 15 15 O 1.42890 * 109.47077 * 285.00295 * 14 13 12 16 16 Si 1.86301 * 109.47000 * 164.99825 * 14 13 12 17 17 H 1.48503 * 109.46989 * 60.00388 * 16 14 13 18 18 H 1.48502 * 109.46882 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47317 * 300.00200 * 16 14 13 20 20 C 1.34292 * 107.02523 * 180.02562 * 13 12 11 21 21 N 1.36805 * 109.95342 * 0.02562 * 20 13 12 22 22 C 1.37762 * 109.85727 * 0.02562 * 21 20 13 23 23 C 1.38847 * 133.39271 * 179.97438 * 22 21 20 24 24 C 1.39377 * 119.75138 * 0.48454 * 8 7 6 25 25 C 1.38000 * 119.87194 * 359.77276 * 24 8 7 26 26 H 1.09000 * 109.46894 * 299.99852 * 1 2 3 27 27 H 1.09001 * 109.47189 * 59.99757 * 1 2 3 28 28 H 1.09000 * 109.47457 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47103 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47584 * 299.99679 * 3 2 1 31 31 H 1.09000 * 109.47150 * 60.00304 * 3 2 1 32 32 H 1.08996 * 109.47593 * 299.99950 * 4 2 1 33 33 H 1.09001 * 109.47281 * 60.00673 * 4 2 1 34 34 H 1.09004 * 109.47004 * 180.02562 * 4 2 1 35 35 H 1.08002 * 119.93507 * 359.97098 * 6 5 2 36 36 H 1.07998 * 120.06452 * 179.72240 * 7 6 5 37 37 H 1.08003 * 119.78763 * 0.02562 * 10 9 8 38 38 H 1.08002 * 120.03518 * 180.22937 * 11 10 9 39 39 H 1.09000 * 109.46589 * 45.00304 * 14 13 12 40 40 H 0.96705 * 114.00013 * 299.99113 * 15 14 13 41 41 H 1.08005 * 125.02081 * 179.97438 * 20 13 12 42 42 H 0.97003 * 125.07035 * 179.97438 * 21 20 13 43 43 H 1.08008 * 120.15209 * 359.97438 * 23 22 21 44 44 H 1.08004 * 120.06162 * 179.74736 * 24 8 7 45 45 H 1.08005 * 119.93530 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5212 5 6 2.4857 -0.8807 1.5252 6 6 2.7153 -2.2443 1.4880 7 6 3.1703 -2.9009 2.6133 8 6 3.4085 -2.1858 3.7857 9 6 3.9024 -2.8851 4.9968 10 6 4.1398 -2.1607 6.1698 11 6 4.5893 -2.7921 7.2921 12 6 4.8254 -4.1693 7.2701 13 6 5.3002 -5.1334 8.2648 14 6 5.6850 -4.8339 9.6907 15 8 6.9586 -4.1865 9.7144 16 14 5.7787 -6.4246 10.6559 17 1 6.7981 -7.3150 10.0447 18 1 6.1573 -6.1294 12.0611 19 1 4.4552 -7.0973 10.6312 20 6 5.3289 -6.3348 7.6655 21 7 4.9118 -6.2192 6.3677 22 6 4.5967 -4.9066 6.0926 23 6 4.1353 -4.2543 4.9571 24 6 3.1758 -0.8119 3.8172 25 6 2.7157 -0.1667 2.6874 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.5741 1.7564 0.0005 30 1 2.1207 2.2703 -0.8900 31 1 2.1207 2.2702 0.8900 32 1 2.1206 -1.9059 -1.5212 33 1 2.1207 -0.3644 -2.4111 34 1 3.5740 -0.8787 -1.5210 35 1 2.5339 -2.7967 0.5779 36 1 3.3450 -3.9663 2.5845 37 1 3.9618 -1.0956 6.1879 38 1 4.7670 -2.2276 8.1955 39 1 4.9368 -4.1803 10.1393 40 1 7.6740 -4.7117 9.3302 41 1 5.6367 -7.2560 8.1379 42 1 4.8481 -6.9520 5.7353 43 1 3.9558 -4.8090 4.0479 44 1 3.3548 -0.2536 4.7242 45 1 2.5347 0.8978 2.7108 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_15137872.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:21:23 Heat of formation + Delta-G solvation = 0.101749 kcal Electronic energy + Delta-G solvation = -23764.900160 eV Core-core repulsion = 20449.358288 eV Total energy + Delta-G solvation = -3315.541872 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.30694 -40.11746 -37.90255 -37.43638 -33.50714 -32.27351 -31.95567 -30.45322 -29.62722 -28.77772 -28.41928 -28.38830 -26.37850 -24.51065 -23.87459 -22.47088 -21.48102 -20.69734 -19.11598 -18.02994 -17.68180 -17.09871 -16.20455 -15.95307 -15.88512 -15.67226 -15.31400 -15.12265 -14.81371 -14.63061 -14.46937 -14.20737 -14.15822 -14.12760 -13.90197 -13.79939 -13.75208 -13.28265 -13.24797 -13.08862 -13.00930 -12.69806 -12.54223 -12.39746 -12.25230 -12.04256 -11.77931 -11.51427 -11.07048 -10.88091 -10.77735 -10.67458 -10.27760 -9.86085 -9.72994 -8.92119 -8.44805 -0.28770 0.47188 0.63388 0.96948 1.19014 1.40663 1.50519 1.62968 1.75645 1.87747 1.93066 2.01816 2.09340 2.57877 2.85818 3.27900 3.62108 3.68299 3.77753 3.82167 3.95546 4.12380 4.17410 4.29679 4.42978 4.50520 4.53823 4.64978 4.71677 4.71889 4.74347 4.76976 4.77662 4.78096 4.79048 4.83882 4.88433 5.07519 5.10817 5.23229 5.39280 5.44162 5.48819 5.53686 5.55763 5.62568 5.69661 5.71065 5.78942 5.92547 6.17953 6.21188 6.48922 6.68102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.059 2.941 3 C -0.449 4.449 4 C -0.450 4.450 5 C -0.371 4.371 6 C -0.087 4.087 7 C -0.124 4.124 8 C -0.032 4.032 9 C -0.025 4.025 10 C -0.133 4.133 11 C -0.062 4.062 12 C -0.085 4.085 13 C -0.202 4.202 14 C -0.044 4.044 15 O -0.540 6.540 16 Si 0.947 3.053 17 H -0.254 1.254 18 H -0.251 1.251 19 H -0.251 1.251 20 C 0.056 3.944 21 N -0.590 5.590 22 C 0.096 3.904 23 C -0.120 4.120 24 C -0.120 4.120 25 C -0.086 4.086 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.114 0.886 40 H 0.374 0.626 41 H 0.170 0.830 42 H 0.419 0.581 43 H 0.124 0.876 44 H 0.124 0.876 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.310 -1.898 -1.604 2.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.251 2.749 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.412 4.412 6 C -0.105 4.105 7 C -0.142 4.142 8 C -0.032 4.032 9 C -0.026 4.026 10 C -0.152 4.152 11 C -0.081 4.081 12 C -0.089 4.089 13 C -0.210 4.210 14 C -0.155 4.155 15 O -0.345 6.345 16 Si 0.769 3.231 17 H -0.178 1.178 18 H -0.174 1.174 19 H -0.174 1.174 20 C -0.072 4.072 21 N -0.192 5.192 22 C -0.010 4.010 23 C -0.140 4.140 24 C -0.138 4.138 25 C -0.104 4.104 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.131 0.869 40 H 0.220 0.780 41 H 0.187 0.813 42 H 0.256 0.744 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.598 -2.353 -0.850 2.572 hybrid contribution 0.294 -0.636 -0.715 1.002 sum -0.304 -2.989 -1.566 3.388 Atomic orbital electron populations 1.26129 1.20548 1.04532 1.04449 0.78174 0.66825 0.66136 0.63803 1.26136 1.06466 1.18587 1.04530 1.26138 1.06451 1.08016 1.15114 1.27397 1.04165 0.99475 1.10210 1.20994 0.97269 0.94640 0.97566 1.21289 1.00434 0.99614 0.92844 1.18763 0.98612 0.93345 0.92464 1.18412 0.99279 0.91892 0.93055 1.20730 1.02275 0.99994 0.92201 1.20238 0.97315 0.92163 0.98378 1.19025 1.03877 0.93469 0.92549 1.20693 1.11294 0.92170 0.96879 1.24269 0.87897 1.08309 0.95073 1.86518 1.16796 1.46957 1.84202 0.85789 0.81393 0.75653 0.80219 1.17762 1.17421 1.17441 1.21687 1.01915 0.99061 0.84495 1.41707 1.58243 1.07746 1.11548 1.18112 1.02853 0.84108 0.95934 1.20020 1.04178 0.93721 0.96095 1.21329 0.99989 0.93652 0.98860 1.21016 0.97122 0.99644 0.92618 0.91163 0.91102 0.91216 0.91056 0.91009 0.91162 0.91230 0.91002 0.91073 0.86132 0.86263 0.85519 0.85472 0.86858 0.77954 0.81323 0.74420 0.85836 0.85847 0.86010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.52 8.65 101.05 0.87 1.39 16 2 Si 1.06 -2.29 12.31 -169.99 -2.09 -4.38 16 3 C -0.45 0.67 8.52 101.05 0.86 1.53 16 4 C -0.45 0.68 8.52 101.05 0.86 1.54 16 5 C -0.37 -0.11 4.60 -39.51 -0.18 -0.30 16 6 C -0.09 -0.07 9.28 -39.63 -0.37 -0.44 16 7 C -0.12 -0.21 9.42 -39.24 -0.37 -0.58 16 8 C -0.03 -0.08 5.88 -104.90 -0.62 -0.70 16 9 C -0.03 -0.07 5.88 -104.87 -0.62 -0.68 16 10 C -0.13 -0.31 9.35 -39.63 -0.37 -0.68 16 11 C -0.06 -0.17 10.04 -39.69 -0.40 -0.57 16 12 C -0.08 -0.26 6.35 -105.07 -0.67 -0.92 16 13 C -0.20 -0.27 5.57 -102.71 -0.57 -0.84 16 14 C -0.04 -0.01 3.06 36.01 0.11 0.10 16 15 O -0.54 -0.57 12.88 -35.23 -0.45 -1.03 16 16 Si 0.95 -0.84 26.08 -169.99 -4.43 -5.27 16 17 H -0.25 0.34 7.03 56.52 0.40 0.74 16 18 H -0.25 -0.18 7.11 56.52 0.40 0.22 16 19 H -0.25 0.03 7.11 56.52 0.40 0.43 16 20 C 0.06 -0.02 10.43 -16.72 -0.17 -0.19 16 21 N -0.59 0.10 6.07 -10.66 -0.06 0.03 16 22 C 0.10 0.22 7.26 -84.01 -0.61 -0.39 16 23 C -0.12 -0.25 9.44 -39.10 -0.37 -0.62 16 24 C -0.12 -0.21 9.42 -39.24 -0.37 -0.58 16 25 C -0.09 -0.07 9.28 -39.64 -0.37 -0.44 16 26 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 27 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 28 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 29 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 30 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 31 H 0.07 -0.12 7.67 -51.93 -0.40 -0.51 16 32 H 0.07 -0.12 7.67 -51.93 -0.40 -0.52 16 33 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 34 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 35 H 0.12 -0.14 7.40 -52.49 -0.39 -0.53 16 36 H 0.12 0.01 6.18 -52.49 -0.32 -0.31 16 37 H 0.13 0.08 6.16 -52.48 -0.32 -0.25 16 38 H 0.13 0.19 8.06 -52.49 -0.42 -0.23 16 39 H 0.11 -0.01 7.96 -51.93 -0.41 -0.43 16 40 H 0.37 -0.81 8.70 45.56 0.40 -0.41 16 41 H 0.17 -0.51 6.29 -52.48 -0.33 -0.84 16 42 H 0.42 -1.30 8.96 -40.82 -0.37 -1.66 16 43 H 0.12 0.02 6.17 -52.48 -0.32 -0.30 16 44 H 0.12 0.03 6.17 -52.48 -0.32 -0.29 16 45 H 0.12 -0.14 7.40 -52.48 -0.39 -0.53 16 LS Contribution 370.07 15.07 5.58 5.58 Total: 0.00 -6.87 370.07 -10.51 -17.38 By element: Atomic # 1 Polarization: -3.25 SS G_CDS: -5.70 Total: -8.95 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -3.34 Total: -3.37 kcal Atomic # 7 Polarization: 0.10 SS G_CDS: -0.06 Total: 0.03 kcal Atomic # 8 Polarization: -0.57 SS G_CDS: -0.45 Total: -1.03 kcal Atomic # 14 Polarization: -3.12 SS G_CDS: -6.53 Total: -9.65 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -6.87 -10.51 -17.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_15137872.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.487 kcal (2) G-P(sol) polarization free energy of solvation -6.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds