Wall clock time and date at job start Mon Mar 8 2021 09:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86293 * 109.47053 * 2 1 4 4 C 1.86299 * 109.46780 * 239.99949 * 2 1 3 5 5 C 1.86800 * 109.46945 * 120.00232 * 2 1 3 6 6 C 1.38331 * 119.87498 * 90.00120 * 5 2 1 7 7 C 1.38003 * 120.12336 * 180.25581 * 6 5 2 8 8 C 1.39376 * 119.87301 * 359.48927 * 7 6 5 9 9 C 1.48321 * 120.12419 * 180.23505 * 8 7 6 10 10 C 1.39889 * 119.80630 * 179.97438 * 9 8 7 11 11 C 1.36391 * 120.40783 * 179.75468 * 10 9 8 12 12 C 1.39743 * 119.93178 * 0.51356 * 11 10 9 13 13 C 1.46437 * 133.86313 * 179.73700 * 12 11 10 14 14 C 1.50701 * 126.48807 * 359.97438 * 13 12 11 15 15 O 1.42890 * 109.47077 * 285.00295 * 14 13 12 16 16 Si 1.86301 * 109.47000 * 164.99825 * 14 13 12 17 17 H 1.48503 * 109.46989 * 60.00388 * 16 14 13 18 18 H 1.48502 * 109.46882 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47317 * 300.00200 * 16 14 13 20 20 C 1.34292 * 107.02523 * 180.02562 * 13 12 11 21 21 N 1.36805 * 109.95342 * 0.02562 * 20 13 12 22 22 C 1.37762 * 109.85727 * 0.02562 * 21 20 13 23 23 C 1.38847 * 133.39271 * 179.97438 * 22 21 20 24 24 C 1.39377 * 119.75138 * 0.48454 * 8 7 6 25 25 C 1.38000 * 119.87194 * 359.77276 * 24 8 7 26 26 H 1.09000 * 109.46894 * 299.99852 * 1 2 3 27 27 H 1.09001 * 109.47189 * 59.99757 * 1 2 3 28 28 H 1.09000 * 109.47457 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47103 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47584 * 299.99679 * 3 2 1 31 31 H 1.09000 * 109.47150 * 60.00304 * 3 2 1 32 32 H 1.08996 * 109.47593 * 299.99950 * 4 2 1 33 33 H 1.09001 * 109.47281 * 60.00673 * 4 2 1 34 34 H 1.09004 * 109.47004 * 180.02562 * 4 2 1 35 35 H 1.08002 * 119.93507 * 359.97098 * 6 5 2 36 36 H 1.07998 * 120.06452 * 179.72240 * 7 6 5 37 37 H 1.08003 * 119.78763 * 0.02562 * 10 9 8 38 38 H 1.08002 * 120.03518 * 180.22937 * 11 10 9 39 39 H 1.09000 * 109.46589 * 45.00304 * 14 13 12 40 40 H 0.96705 * 114.00013 * 299.99113 * 15 14 13 41 41 H 1.08005 * 125.02081 * 179.97438 * 20 13 12 42 42 H 0.97003 * 125.07035 * 179.97438 * 21 20 13 43 43 H 1.08008 * 120.15209 * 359.97438 * 23 22 21 44 44 H 1.08004 * 120.06162 * 179.74736 * 24 8 7 45 45 H 1.08005 * 119.93530 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5212 5 6 2.4857 -0.8807 1.5252 6 6 2.7153 -2.2443 1.4880 7 6 3.1703 -2.9009 2.6133 8 6 3.4085 -2.1858 3.7857 9 6 3.9024 -2.8851 4.9968 10 6 4.1398 -2.1607 6.1698 11 6 4.5893 -2.7921 7.2921 12 6 4.8254 -4.1693 7.2701 13 6 5.3002 -5.1334 8.2648 14 6 5.6850 -4.8339 9.6907 15 8 6.9586 -4.1865 9.7144 16 14 5.7787 -6.4246 10.6559 17 1 6.7981 -7.3150 10.0447 18 1 6.1573 -6.1294 12.0611 19 1 4.4552 -7.0973 10.6312 20 6 5.3289 -6.3348 7.6655 21 7 4.9118 -6.2192 6.3677 22 6 4.5967 -4.9066 6.0926 23 6 4.1353 -4.2543 4.9571 24 6 3.1758 -0.8119 3.8172 25 6 2.7157 -0.1667 2.6874 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.5741 1.7564 0.0005 30 1 2.1207 2.2703 -0.8900 31 1 2.1207 2.2702 0.8900 32 1 2.1206 -1.9059 -1.5212 33 1 2.1207 -0.3644 -2.4111 34 1 3.5740 -0.8787 -1.5210 35 1 2.5339 -2.7967 0.5779 36 1 3.3450 -3.9663 2.5845 37 1 3.9618 -1.0956 6.1879 38 1 4.7670 -2.2276 8.1955 39 1 4.9368 -4.1803 10.1393 40 1 7.6740 -4.7117 9.3302 41 1 5.6367 -7.2560 8.1379 42 1 4.8481 -6.9520 5.7353 43 1 3.9558 -4.8090 4.0479 44 1 3.3548 -0.2536 4.7242 45 1 2.5347 0.8978 2.7108 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_15137872.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:21:22 Heat of formation + Delta-G solvation = 8.848682 kcal Electronic energy + Delta-G solvation = -23764.520864 eV Core-core repulsion = 20449.358288 eV Total energy + Delta-G solvation = -3315.162577 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.35730 -40.16092 -37.94959 -37.47652 -33.58035 -32.31615 -31.99091 -30.53383 -29.52341 -28.81184 -28.27706 -28.25831 -26.38763 -24.57737 -23.94252 -22.53289 -21.55503 -20.72935 -19.15874 -18.05833 -17.71627 -17.12758 -16.24439 -15.99711 -15.87936 -15.71637 -15.32253 -15.16704 -14.89450 -14.65105 -14.48486 -14.17873 -14.11138 -14.06197 -13.87521 -13.71143 -13.70124 -13.16758 -13.11307 -13.00674 -12.95718 -12.73433 -12.61490 -12.37466 -12.29244 -12.03588 -11.74658 -11.56435 -11.03388 -10.74860 -10.74157 -10.70798 -10.27199 -9.90491 -9.79128 -9.01895 -8.51722 -0.37364 0.35930 0.57242 0.88872 1.24513 1.48181 1.53688 1.63420 1.87393 1.97996 2.04704 2.11928 2.13915 2.68908 2.76567 3.18230 3.62832 3.65606 3.74363 3.85275 3.92266 4.10630 4.13793 4.24567 4.36211 4.48383 4.52637 4.62391 4.71128 4.76128 4.83139 4.85580 4.85694 4.89647 4.90468 4.91013 4.92250 5.02665 5.04493 5.20070 5.31203 5.39583 5.53132 5.58846 5.62025 5.63932 5.68539 5.68928 5.72234 5.82546 6.09222 6.17272 6.58258 6.81901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.127 2.873 3 C -0.462 4.462 4 C -0.461 4.461 5 C -0.383 4.383 6 C -0.098 4.098 7 C -0.137 4.137 8 C -0.050 4.050 9 C -0.040 4.040 10 C -0.142 4.142 11 C -0.078 4.078 12 C -0.110 4.110 13 C -0.223 4.223 14 C -0.051 4.051 15 O -0.559 6.559 16 Si 0.994 3.006 17 H -0.238 1.238 18 H -0.277 1.277 19 H -0.259 1.259 20 C 0.067 3.933 21 N -0.581 5.581 22 C 0.082 3.918 23 C -0.124 4.124 24 C -0.137 4.137 25 C -0.098 4.098 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.140 0.860 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.129 0.871 39 H 0.106 0.894 40 H 0.386 0.614 41 H 0.201 0.799 42 H 0.433 0.567 43 H 0.139 0.861 44 H 0.130 0.870 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.276 -2.836 -2.453 3.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.314 2.686 3 C -0.569 4.569 4 C -0.568 4.568 5 C -0.422 4.422 6 C -0.116 4.116 7 C -0.155 4.155 8 C -0.050 4.050 9 C -0.041 4.041 10 C -0.160 4.160 11 C -0.096 4.096 12 C -0.114 4.114 13 C -0.231 4.231 14 C -0.161 4.161 15 O -0.366 6.366 16 Si 0.816 3.184 17 H -0.161 1.161 18 H -0.202 1.202 19 H -0.183 1.183 20 C -0.061 4.061 21 N -0.185 5.185 22 C -0.025 4.025 23 C -0.144 4.144 24 C -0.154 4.154 25 C -0.116 4.116 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.158 0.842 36 H 0.148 0.852 37 H 0.154 0.846 38 H 0.147 0.853 39 H 0.124 0.876 40 H 0.235 0.765 41 H 0.217 0.783 42 H 0.273 0.727 43 H 0.156 0.844 44 H 0.148 0.852 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.553 -3.310 -1.719 3.771 hybrid contribution 0.274 -0.320 -0.450 0.616 sum -0.279 -3.630 -2.169 4.237 Atomic orbital electron populations 1.26294 1.21706 1.04409 1.04515 0.77159 0.65121 0.64638 0.61697 1.26281 1.06389 1.19435 1.04839 1.26267 1.06387 1.08477 1.15712 1.28029 1.03332 0.99624 1.11190 1.21328 0.97020 0.95165 0.98044 1.21529 1.00657 1.00337 0.92983 1.18914 0.99479 0.93831 0.92769 1.18589 0.99767 0.92413 0.93325 1.20899 1.02316 1.00591 0.92243 1.20370 0.98014 0.92599 0.98649 1.19403 1.04360 0.93946 0.93705 1.20881 1.12465 0.92471 0.97293 1.24468 0.87432 1.09297 0.94900 1.86477 1.17580 1.48102 1.84443 0.85130 0.80982 0.74304 0.78002 1.16054 1.20221 1.18335 1.22155 1.00157 0.99605 0.84153 1.41756 1.57451 1.07337 1.11989 1.18247 1.03273 0.85181 0.95817 1.20218 1.03798 0.93727 0.96692 1.21558 1.00425 0.93769 0.99685 1.21333 0.96967 1.00683 0.92574 0.91486 0.90669 0.91452 0.91338 0.90656 0.90954 0.90901 0.90650 0.91323 0.84241 0.85246 0.84629 0.85301 0.87558 0.76515 0.78277 0.72745 0.84377 0.85246 0.84305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.30 8.65 113.37 0.98 2.28 16 2 Si 1.13 -5.57 12.31 68.60 0.84 -4.73 16 3 C -0.46 1.64 8.52 113.37 0.97 2.60 16 4 C -0.46 1.77 8.52 113.37 0.97 2.74 16 5 C -0.38 -0.24 4.60 22.31 0.10 -0.13 16 6 C -0.10 -0.17 9.28 22.24 0.21 0.04 16 7 C -0.14 -0.56 9.42 22.49 0.21 -0.35 16 8 C -0.05 -0.32 5.88 -20.05 -0.12 -0.44 16 9 C -0.04 -0.28 5.88 -20.03 -0.12 -0.40 16 10 C -0.14 -0.97 9.35 22.24 0.21 -0.76 16 11 C -0.08 -0.59 10.04 22.20 0.22 -0.36 16 12 C -0.11 -0.82 6.35 -20.15 -0.13 -0.94 16 13 C -0.22 -0.68 5.57 -18.63 -0.10 -0.79 16 14 C -0.05 -0.05 3.06 71.24 0.22 0.16 16 15 O -0.56 -1.64 12.88 -148.98 -1.92 -3.56 16 16 Si 0.99 -2.30 26.08 68.60 1.79 -0.51 16 17 H -0.24 1.19 7.03 99.48 0.70 1.89 16 18 H -0.28 -0.54 7.11 99.48 0.71 0.17 16 19 H -0.26 0.27 7.11 99.48 0.71 0.97 16 20 C 0.07 -0.10 10.43 83.02 0.87 0.77 16 21 N -0.58 0.48 6.07 -187.64 -1.14 -0.66 16 22 C 0.08 0.43 7.26 38.98 0.28 0.72 16 23 C -0.12 -0.65 9.44 22.58 0.21 -0.44 16 24 C -0.14 -0.66 9.42 22.49 0.21 -0.45 16 25 C -0.10 -0.22 9.28 22.23 0.21 -0.01 16 26 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 27 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 28 H 0.07 -0.15 7.96 -2.39 -0.02 -0.16 16 29 H 0.07 -0.18 7.96 -2.38 -0.02 -0.20 16 30 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 31 H 0.07 -0.28 7.67 -2.39 -0.02 -0.30 16 32 H 0.07 -0.32 7.67 -2.39 -0.02 -0.33 16 33 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 34 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 35 H 0.14 -0.42 7.40 -2.91 -0.02 -0.44 16 36 H 0.13 0.09 6.18 -2.91 -0.02 0.07 16 37 H 0.14 0.47 6.16 -2.91 -0.02 0.45 16 38 H 0.13 0.73 8.06 -2.91 -0.02 0.71 16 39 H 0.11 0.16 7.96 -2.39 -0.02 0.14 16 40 H 0.39 -1.55 8.70 -74.05 -0.64 -2.19 16 41 H 0.20 -1.67 6.29 -2.91 -0.02 -1.69 16 42 H 0.43 -3.10 8.96 -92.71 -0.83 -3.93 16 43 H 0.14 0.13 6.17 -2.91 -0.02 0.11 16 44 H 0.13 0.28 6.17 -2.91 -0.02 0.27 16 45 H 0.14 -0.31 7.40 -2.91 -0.02 -0.33 16 Total: 0.00 -16.60 370.07 5.26 -11.34 By element: Atomic # 1 Polarization: -6.41 SS G_CDS: 0.29 Total: -6.12 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 5.40 Total: 4.24 kcal Atomic # 7 Polarization: 0.48 SS G_CDS: -1.14 Total: -0.66 kcal Atomic # 8 Polarization: -1.64 SS G_CDS: -1.92 Total: -3.56 kcal Atomic # 14 Polarization: -7.87 SS G_CDS: 2.63 Total: -5.24 kcal Total: -16.60 5.26 -11.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_15137872.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.188 kcal (2) G-P(sol) polarization free energy of solvation -16.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds