Wall clock time and date at job start Mon Mar 8 2021 09:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86293 * 109.47256 * 2 1 4 4 C 1.86300 * 109.46941 * 239.99664 * 2 1 3 5 5 C 1.86807 * 109.46778 * 119.99870 * 2 1 3 6 6 C 1.38318 * 119.87446 * 269.97319 * 5 2 1 7 7 C 1.38028 * 120.11577 * 180.02562 * 6 5 2 8 8 C 1.39329 * 119.87788 * 0.02562 * 7 6 5 9 9 C 1.48388 * 120.11941 * 179.97438 * 8 7 6 10 10 C 1.39320 * 120.12358 * 123.38628 * 9 8 7 11 11 C 1.38040 * 119.87799 * 180.02562 * 10 9 8 12 12 C 1.50695 * 119.94089 * 179.97438 * 11 10 9 13 13 F 1.39897 * 109.47359 * 89.99570 * 12 11 10 14 14 F 1.39903 * 109.47208 * 210.00102 * 12 11 10 15 15 F 1.39898 * 109.47033 * 329.99411 * 12 11 10 16 16 C 1.38306 * 120.12091 * 359.97438 * 11 10 9 17 17 C 1.38346 * 120.24296 * 0.02562 * 16 11 10 18 18 C 1.37993 * 120.12004 * 359.67911 * 17 16 11 19 19 C 1.50699 * 120.05991 * 180.31648 * 18 17 16 20 20 O 1.42905 * 109.46940 * 105.35954 * 19 18 17 21 21 Si 1.86298 * 109.47396 * 345.36161 * 19 18 17 22 22 H 1.48496 * 109.47070 * 59.99594 * 21 19 18 23 23 H 1.48499 * 109.47222 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46705 * 299.99947 * 21 19 18 25 25 C 1.39336 * 119.76423 * 359.97438 * 8 7 6 26 26 C 1.38027 * 119.87413 * 0.02562 * 25 8 7 27 27 H 1.08996 * 109.47051 * 300.00570 * 1 2 3 28 28 H 1.08997 * 109.46803 * 60.00125 * 1 2 3 29 29 H 1.08999 * 109.47113 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47041 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46869 * 299.99502 * 3 2 1 32 32 H 1.08996 * 109.47556 * 59.99739 * 3 2 1 33 33 H 1.08999 * 109.47283 * 299.99976 * 4 2 1 34 34 H 1.08997 * 109.47201 * 60.00454 * 4 2 1 35 35 H 1.09000 * 109.46955 * 180.02562 * 4 2 1 36 36 H 1.08001 * 119.94647 * 0.02862 * 6 5 2 37 37 H 1.07996 * 120.05497 * 180.27555 * 7 6 5 38 38 H 1.07993 * 120.06164 * 0.02562 * 10 9 8 39 39 H 1.08001 * 119.87945 * 180.02562 * 16 11 10 40 40 H 1.07996 * 119.93435 * 179.97438 * 17 16 11 41 41 H 1.08999 * 109.47593 * 225.35705 * 19 18 17 42 42 H 0.96696 * 113.99943 * 299.99935 * 20 19 18 43 43 H 1.07994 * 120.06600 * 179.97438 * 25 8 7 44 44 H 1.07993 * 119.93705 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7158 -0.1666 2.6874 7 6 3.1763 -0.8121 3.8172 8 6 3.4098 -2.1853 3.7853 9 6 3.9054 -2.8846 4.9966 10 6 3.1905 -3.9564 5.5269 11 6 3.6560 -4.6030 6.6542 12 6 2.8836 -5.7621 7.2293 13 9 3.3285 -6.9538 6.6471 14 9 3.0842 -5.8156 8.6129 15 9 1.5208 -5.5928 6.9621 16 6 4.8300 -4.1889 7.2569 17 6 5.5438 -3.1252 6.7345 18 6 5.0909 -2.4756 5.6045 19 6 5.8734 -1.3216 5.0325 20 8 6.5512 -1.7461 3.8483 21 14 7.1209 -0.7352 6.2857 22 1 8.0486 -1.8462 6.6177 23 1 7.8923 0.4015 5.7218 24 1 6.4165 -0.2941 7.5163 25 6 3.1762 -2.8996 2.6120 26 6 2.7157 -2.2440 1.4881 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.5741 1.7563 0.0005 31 1 2.1208 2.2702 -0.8901 32 1 2.1208 2.2703 0.8899 33 1 2.1207 -1.9060 -1.5211 34 1 2.1207 -0.3645 -2.4111 35 1 3.5740 -0.8787 -1.5209 36 1 2.5348 0.8979 2.7109 37 1 3.3514 -0.2544 4.7252 38 1 2.2740 -4.2808 5.0569 39 1 5.1908 -4.6978 8.1385 40 1 6.4597 -2.8058 7.2094 41 1 5.1924 -0.5061 4.7887 42 1 7.1750 -2.4711 3.9906 43 1 3.3560 -3.9641 2.5818 44 1 2.5340 -2.7967 0.5783 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_15562958.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:21:31 Heat of formation + Delta-G solvation = -179.154669 kcal Electronic energy + Delta-G solvation = -29082.773783 eV Core-core repulsion = 24672.975034 eV Total energy + Delta-G solvation = -4409.798749 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 354.113 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.13458 -48.64954 -48.59336 -41.40544 -39.40622 -37.80175 -34.12375 -33.35533 -31.89072 -30.19595 -29.40276 -28.58436 -28.40319 -28.37348 -25.43368 -24.70720 -23.37702 -22.74460 -21.84199 -19.54815 -19.45536 -19.36622 -18.43680 -17.52097 -17.15208 -16.69740 -16.37806 -15.85445 -15.68569 -15.63544 -15.51568 -15.29242 -15.07823 -15.03082 -14.80907 -14.74362 -14.51135 -14.33758 -14.21606 -14.18371 -14.09880 -13.93505 -13.82938 -13.47840 -13.40221 -13.25375 -13.21872 -13.09232 -12.92585 -12.66490 -12.27829 -12.17247 -12.02539 -11.74559 -11.05205 -10.89517 -10.81335 -10.54767 -10.39047 -10.33479 -9.74850 -9.34086 -0.42774 -0.16269 0.45829 0.57503 0.98749 1.27720 1.39413 1.62042 1.72863 1.78964 1.86099 1.94923 2.17253 2.55871 2.66505 2.92824 2.98339 3.30629 3.40212 3.44709 3.50172 3.64605 3.90810 3.99206 4.08655 4.13584 4.30909 4.45710 4.47271 4.59712 4.66932 4.71083 4.72234 4.76136 4.76567 4.76810 4.77500 4.82715 4.91479 5.01883 5.08849 5.19747 5.33875 5.44898 5.51144 5.54450 5.57583 5.61742 5.65255 6.12807 6.43795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.059 2.941 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.365 4.365 6 C -0.085 4.085 7 C -0.115 4.115 8 C -0.035 4.035 9 C -0.020 4.020 10 C -0.058 4.058 11 C -0.175 4.175 12 C 0.509 3.491 13 F -0.174 7.174 14 F -0.175 7.175 15 F -0.175 7.175 16 C -0.063 4.063 17 C -0.126 4.126 18 C -0.076 4.076 19 C -0.089 4.089 20 O -0.525 6.525 21 Si 0.941 3.059 22 H -0.248 1.248 23 H -0.248 1.248 24 H -0.245 1.245 25 C -0.110 4.110 26 C -0.084 4.084 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.124 0.876 42 H 0.375 0.625 43 H 0.119 0.881 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.250 2.173 -1.085 2.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.251 2.749 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.406 4.406 6 C -0.103 4.103 7 C -0.133 4.133 8 C -0.035 4.035 9 C -0.020 4.020 10 C -0.076 4.076 11 C -0.176 4.176 12 C 0.455 3.545 13 F -0.156 7.156 14 F -0.156 7.156 15 F -0.156 7.156 16 C -0.081 4.081 17 C -0.144 4.144 18 C -0.077 4.077 19 C -0.199 4.199 20 O -0.330 6.330 21 Si 0.763 3.237 22 H -0.172 1.172 23 H -0.171 1.171 24 H -0.169 1.169 25 C -0.128 4.128 26 C -0.102 4.102 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.155 0.845 41 H 0.142 0.858 42 H 0.221 0.779 43 H 0.137 0.863 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.486 2.869 -0.669 3.300 hybrid contribution -0.112 -1.053 0.333 1.111 sum 1.374 1.816 -0.335 2.302 Atomic orbital electron populations 1.26130 1.20527 1.04560 1.04460 0.78188 0.66779 0.66156 0.63823 1.26134 1.06525 1.18550 1.04517 1.26137 1.06518 1.08024 1.15068 1.27406 1.03637 0.99456 1.10121 1.20984 0.97147 0.99632 0.92544 1.21183 1.00169 0.93263 0.98712 1.18513 0.99502 0.93356 0.92122 1.18591 0.93692 0.94941 0.94746 1.21060 0.99387 0.93631 0.93479 1.19944 0.98832 0.98637 1.00231 1.18247 0.77689 0.82637 0.75956 1.93247 1.89092 1.49121 1.84113 1.93210 1.94766 1.96672 1.30994 1.93213 1.33393 1.95433 1.93590 1.20958 0.92447 0.95681 0.99026 1.21074 1.00683 0.96451 0.96173 1.20637 0.95055 0.97349 0.94618 1.25240 1.01198 0.97651 0.95854 1.86601 1.59117 1.56639 1.30641 0.85809 0.78947 0.81280 0.77659 1.17190 1.17126 1.16871 1.21205 0.99515 0.99553 0.92512 1.20994 0.97044 0.94612 0.97575 0.91187 0.91075 0.91183 0.90994 0.90999 0.91196 0.91200 0.91003 0.91010 0.85936 0.86222 0.84118 0.84051 0.84494 0.85809 0.77860 0.86297 0.85993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.67 8.65 101.05 0.87 1.55 16 2 Si 1.06 -2.65 12.31 -169.99 -2.09 -4.74 16 3 C -0.45 0.81 8.52 101.05 0.86 1.67 16 4 C -0.45 0.76 8.52 101.05 0.86 1.62 16 5 C -0.36 0.11 4.60 -39.52 -0.18 -0.07 16 6 C -0.09 0.00 9.28 -39.63 -0.37 -0.37 16 7 C -0.12 -0.07 7.94 -39.25 -0.31 -0.38 16 8 C -0.03 -0.04 4.85 -104.90 -0.51 -0.55 16 9 C -0.02 -0.01 5.40 -104.90 -0.57 -0.58 16 10 C -0.06 -0.04 8.97 -39.25 -0.35 -0.39 16 11 C -0.18 -0.13 5.45 -104.67 -0.57 -0.70 16 12 C 0.51 0.79 3.36 36.00 0.12 0.91 16 13 F -0.17 -0.40 17.30 2.25 0.04 -0.37 16 14 F -0.18 -0.33 16.45 2.25 0.04 -0.30 16 15 F -0.18 -0.39 16.46 2.25 0.04 -0.36 16 16 C -0.06 0.02 9.39 -39.52 -0.37 -0.35 16 17 C -0.13 0.11 8.65 -39.63 -0.34 -0.23 16 18 C -0.08 0.02 5.26 -104.29 -0.55 -0.53 16 19 C -0.09 0.08 2.08 36.01 0.07 0.15 16 20 O -0.53 0.07 12.83 -35.23 -0.45 -0.38 16 21 Si 0.94 -1.35 25.48 -169.99 -4.33 -5.68 16 22 H -0.25 0.44 6.74 56.52 0.38 0.82 16 23 H -0.25 -0.02 7.11 56.52 0.40 0.38 16 24 H -0.25 0.22 7.11 56.52 0.40 0.62 16 25 C -0.11 -0.11 9.63 -39.25 -0.38 -0.48 16 26 C -0.08 -0.02 9.28 -39.63 -0.37 -0.39 16 27 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 28 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 29 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 30 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 31 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 32 H 0.07 -0.14 7.67 -51.93 -0.40 -0.54 16 33 H 0.07 -0.13 7.67 -51.93 -0.40 -0.53 16 34 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 35 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 36 H 0.12 -0.24 7.40 -52.49 -0.39 -0.62 16 37 H 0.12 -0.11 7.04 -52.49 -0.37 -0.48 16 38 H 0.14 0.00 7.60 -52.49 -0.40 -0.40 16 39 H 0.14 -0.28 7.59 -52.49 -0.40 -0.68 16 40 H 0.14 -0.35 4.88 -52.49 -0.26 -0.60 16 41 H 0.12 -0.13 4.96 -51.93 -0.26 -0.39 16 42 H 0.37 -1.26 8.70 45.56 0.40 -0.86 16 43 H 0.12 0.00 8.06 -52.49 -0.42 -0.42 16 44 H 0.12 -0.18 7.40 -52.49 -0.39 -0.57 16 LS Contribution 376.33 15.07 5.67 5.67 Total: 0.00 -5.03 376.33 -8.16 -13.19 By element: Atomic # 1 Polarization: -2.94 SS G_CDS: -4.99 Total: -7.93 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -2.07 Total: 0.88 kcal Atomic # 8 Polarization: 0.07 SS G_CDS: -0.45 Total: -0.38 kcal Atomic # 9 Polarization: -1.13 SS G_CDS: 0.11 Total: -1.02 kcal Atomic # 14 Polarization: -4.00 SS G_CDS: -6.42 Total: -10.42 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -5.03 -8.16 -13.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_15562958.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.966 kcal (2) G-P(sol) polarization free energy of solvation -5.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds