Wall clock time and date at job start Mon Mar 8 2021 09:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86293 * 109.47256 * 2 1 4 4 C 1.86300 * 109.46941 * 239.99664 * 2 1 3 5 5 C 1.86807 * 109.46778 * 119.99870 * 2 1 3 6 6 C 1.38318 * 119.87446 * 269.97319 * 5 2 1 7 7 C 1.38028 * 120.11577 * 180.02562 * 6 5 2 8 8 C 1.39329 * 119.87788 * 0.02562 * 7 6 5 9 9 C 1.48388 * 120.11941 * 179.97438 * 8 7 6 10 10 C 1.39320 * 120.12358 * 123.38628 * 9 8 7 11 11 C 1.38040 * 119.87799 * 180.02562 * 10 9 8 12 12 C 1.50695 * 119.94089 * 179.97438 * 11 10 9 13 13 F 1.39897 * 109.47359 * 89.99570 * 12 11 10 14 14 F 1.39903 * 109.47208 * 210.00102 * 12 11 10 15 15 F 1.39898 * 109.47033 * 329.99411 * 12 11 10 16 16 C 1.38306 * 120.12091 * 359.97438 * 11 10 9 17 17 C 1.38346 * 120.24296 * 0.02562 * 16 11 10 18 18 C 1.37993 * 120.12004 * 359.67911 * 17 16 11 19 19 C 1.50699 * 120.05991 * 180.31648 * 18 17 16 20 20 O 1.42905 * 109.46940 * 105.35954 * 19 18 17 21 21 Si 1.86298 * 109.47396 * 345.36161 * 19 18 17 22 22 H 1.48496 * 109.47070 * 59.99594 * 21 19 18 23 23 H 1.48499 * 109.47222 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46705 * 299.99947 * 21 19 18 25 25 C 1.39336 * 119.76423 * 359.97438 * 8 7 6 26 26 C 1.38027 * 119.87413 * 0.02562 * 25 8 7 27 27 H 1.08996 * 109.47051 * 300.00570 * 1 2 3 28 28 H 1.08997 * 109.46803 * 60.00125 * 1 2 3 29 29 H 1.08999 * 109.47113 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47041 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46869 * 299.99502 * 3 2 1 32 32 H 1.08996 * 109.47556 * 59.99739 * 3 2 1 33 33 H 1.08999 * 109.47283 * 299.99976 * 4 2 1 34 34 H 1.08997 * 109.47201 * 60.00454 * 4 2 1 35 35 H 1.09000 * 109.46955 * 180.02562 * 4 2 1 36 36 H 1.08001 * 119.94647 * 0.02862 * 6 5 2 37 37 H 1.07996 * 120.05497 * 180.27555 * 7 6 5 38 38 H 1.07993 * 120.06164 * 0.02562 * 10 9 8 39 39 H 1.08001 * 119.87945 * 180.02562 * 16 11 10 40 40 H 1.07996 * 119.93435 * 179.97438 * 17 16 11 41 41 H 1.08999 * 109.47593 * 225.35705 * 19 18 17 42 42 H 0.96696 * 113.99943 * 299.99935 * 20 19 18 43 43 H 1.07994 * 120.06600 * 179.97438 * 25 8 7 44 44 H 1.07993 * 119.93705 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7158 -0.1666 2.6874 7 6 3.1763 -0.8121 3.8172 8 6 3.4098 -2.1853 3.7853 9 6 3.9054 -2.8846 4.9966 10 6 3.1905 -3.9564 5.5269 11 6 3.6560 -4.6030 6.6542 12 6 2.8836 -5.7621 7.2293 13 9 3.3285 -6.9538 6.6471 14 9 3.0842 -5.8156 8.6129 15 9 1.5208 -5.5928 6.9621 16 6 4.8300 -4.1889 7.2569 17 6 5.5438 -3.1252 6.7345 18 6 5.0909 -2.4756 5.6045 19 6 5.8734 -1.3216 5.0325 20 8 6.5512 -1.7461 3.8483 21 14 7.1209 -0.7352 6.2857 22 1 8.0486 -1.8462 6.6177 23 1 7.8923 0.4015 5.7218 24 1 6.4165 -0.2941 7.5163 25 6 3.1762 -2.8996 2.6120 26 6 2.7157 -2.2440 1.4881 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.5741 1.7563 0.0005 31 1 2.1208 2.2702 -0.8901 32 1 2.1208 2.2703 0.8899 33 1 2.1207 -1.9060 -1.5211 34 1 2.1207 -0.3645 -2.4111 35 1 3.5740 -0.8787 -1.5209 36 1 2.5348 0.8979 2.7109 37 1 3.3514 -0.2544 4.7252 38 1 2.2740 -4.2808 5.0569 39 1 5.1908 -4.6978 8.1385 40 1 6.4597 -2.8058 7.2094 41 1 5.1924 -0.5061 4.7887 42 1 7.1750 -2.4711 3.9906 43 1 3.3560 -3.9641 2.5818 44 1 2.5340 -2.7967 0.5783 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_15562958.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:21:30 Heat of formation + Delta-G solvation = -167.572357 kcal Electronic energy + Delta-G solvation = -29082.271536 eV Core-core repulsion = 24672.975034 eV Total energy + Delta-G solvation = -4409.296502 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 354.113 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -51.28206 -48.80062 -48.75105 -41.37290 -39.36930 -37.74899 -34.10165 -33.32591 -31.86153 -30.14510 -29.27328 -28.56644 -28.25647 -28.24416 -25.45958 -24.67678 -23.34742 -22.71877 -21.85239 -19.62609 -19.58284 -19.46477 -18.40053 -17.48318 -17.11553 -16.65089 -16.34504 -15.86673 -15.67880 -15.62839 -15.58138 -15.37832 -15.18971 -15.03809 -14.94047 -14.90498 -14.47666 -14.28184 -14.17904 -14.06310 -13.99887 -13.85218 -13.70904 -13.41809 -13.34584 -13.11599 -13.09629 -12.95242 -12.91363 -12.60084 -12.19972 -12.11310 -11.97459 -11.66069 -10.92998 -10.73896 -10.73670 -10.47136 -10.36944 -10.29604 -9.74372 -9.31934 -0.41414 -0.14361 0.48613 0.57809 1.09250 1.40000 1.49931 1.52324 1.87959 1.88733 2.04772 2.08798 2.21284 2.57726 2.69332 2.86852 2.97836 3.28589 3.38136 3.52707 3.55858 3.70243 3.96458 4.03789 4.12902 4.17695 4.35195 4.51742 4.53940 4.64050 4.72418 4.85298 4.85925 4.86368 4.90044 4.90677 4.91820 4.92515 4.94246 5.04372 5.12991 5.22941 5.37560 5.57726 5.59512 5.62043 5.64737 5.69147 5.73179 6.16682 6.66057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.124 2.876 3 C -0.461 4.461 4 C -0.463 4.463 5 C -0.377 4.377 6 C -0.096 4.096 7 C -0.128 4.128 8 C -0.045 4.045 9 C -0.029 4.029 10 C -0.065 4.065 11 C -0.183 4.183 12 C 0.510 3.490 13 F -0.180 7.180 14 F -0.177 7.177 15 F -0.181 7.181 16 C -0.064 4.064 17 C -0.125 4.125 18 C -0.077 4.077 19 C -0.091 4.091 20 O -0.542 6.542 21 Si 0.974 3.026 22 H -0.237 1.237 23 H -0.272 1.272 24 H -0.251 1.251 25 C -0.126 4.126 26 C -0.097 4.097 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.140 0.860 37 H 0.130 0.870 38 H 0.140 0.860 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.122 0.878 42 H 0.387 0.613 43 H 0.121 0.879 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.719 2.619 -0.984 3.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.311 2.689 3 C -0.568 4.568 4 C -0.570 4.570 5 C -0.417 4.417 6 C -0.114 4.114 7 C -0.146 4.146 8 C -0.045 4.045 9 C -0.029 4.029 10 C -0.083 4.083 11 C -0.184 4.184 12 C 0.456 3.544 13 F -0.162 7.162 14 F -0.158 7.158 15 F -0.163 7.163 16 C -0.082 4.082 17 C -0.142 4.142 18 C -0.077 4.077 19 C -0.201 4.201 20 O -0.348 6.348 21 Si 0.796 3.204 22 H -0.160 1.160 23 H -0.197 1.197 24 H -0.174 1.174 25 C -0.144 4.144 26 C -0.114 4.114 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.158 0.842 37 H 0.147 0.853 38 H 0.158 0.842 39 H 0.175 0.825 40 H 0.174 0.826 41 H 0.140 0.860 42 H 0.236 0.764 43 H 0.139 0.861 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.956 3.286 -0.559 3.865 hybrid contribution -0.266 -1.188 0.282 1.249 sum 1.690 2.098 -0.277 2.709 Atomic orbital electron populations 1.26288 1.21668 1.04389 1.04537 0.77196 0.65127 0.64749 0.61779 1.26262 1.06405 1.19285 1.04870 1.26291 1.06370 1.08447 1.15877 1.27941 1.03140 0.99467 1.11128 1.21308 0.96914 1.00667 0.92511 1.21418 1.00361 0.93339 0.99485 1.18639 0.99842 0.93726 0.92326 1.18670 0.94209 0.95108 0.94919 1.21096 0.99584 0.93892 0.93695 1.19938 0.99388 0.98578 1.00544 1.18345 0.77493 0.82736 0.75835 1.93231 1.89122 1.49611 1.84210 1.93200 1.94755 1.96695 1.31179 1.93196 1.33979 1.95459 1.93632 1.21199 0.91925 0.95732 0.99367 1.21279 1.01139 0.95979 0.95799 1.20770 0.94741 0.97461 0.94721 1.25345 1.01459 0.97350 0.95935 1.86567 1.59607 1.57364 1.31282 0.85347 0.78054 0.80401 0.76548 1.16032 1.19655 1.17427 1.21380 1.00160 0.99880 0.93011 1.21270 0.97027 0.95189 0.97948 0.91365 0.90751 0.91498 0.91313 0.90733 0.90806 0.91032 0.90729 0.91386 0.84205 0.85258 0.84212 0.82452 0.82637 0.86029 0.76399 0.86142 0.84654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.47 8.65 113.37 0.98 2.46 16 2 Si 1.12 -5.92 12.31 68.60 0.84 -5.08 16 3 C -0.46 1.88 8.52 113.37 0.97 2.85 16 4 C -0.46 1.65 8.52 113.37 0.97 2.61 16 5 C -0.38 0.14 4.60 22.31 0.10 0.24 16 6 C -0.10 -0.03 9.28 22.24 0.21 0.18 16 7 C -0.13 -0.24 7.94 22.48 0.18 -0.06 16 8 C -0.05 -0.14 4.85 -20.05 -0.10 -0.24 16 9 C -0.03 -0.06 5.40 -20.04 -0.11 -0.17 16 10 C -0.06 -0.15 8.97 22.48 0.20 0.05 16 11 C -0.18 -0.35 5.45 -19.90 -0.11 -0.46 16 12 C 0.51 1.90 3.36 71.23 0.24 2.14 16 13 F -0.18 -0.96 17.30 44.97 0.78 -0.18 16 14 F -0.18 -0.71 16.45 44.97 0.74 0.03 16 15 F -0.18 -0.99 16.46 44.97 0.74 -0.25 16 16 C -0.06 0.08 9.39 22.31 0.21 0.29 16 17 C -0.12 0.31 8.65 22.24 0.19 0.50 16 18 C -0.08 0.03 5.26 -19.65 -0.10 -0.07 16 19 C -0.09 0.15 2.08 71.24 0.15 0.30 16 20 O -0.54 0.05 12.83 -148.98 -1.91 -1.87 16 21 Si 0.97 -3.33 25.48 68.60 1.75 -1.59 16 22 H -0.24 1.25 6.74 99.48 0.67 1.92 16 23 H -0.27 -0.14 7.11 99.48 0.71 0.57 16 24 H -0.25 0.64 7.11 99.48 0.71 1.35 16 25 C -0.13 -0.39 9.63 22.48 0.22 -0.17 16 26 C -0.10 -0.11 9.28 22.24 0.21 0.09 16 27 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 28 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 29 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 30 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 31 H 0.07 -0.33 7.96 -2.38 -0.02 -0.35 16 32 H 0.07 -0.35 7.67 -2.39 -0.02 -0.37 16 33 H 0.07 -0.27 7.67 -2.39 -0.02 -0.29 16 34 H 0.07 -0.30 7.96 -2.39 -0.02 -0.31 16 35 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 36 H 0.14 -0.58 7.40 -2.91 -0.02 -0.60 16 37 H 0.13 -0.16 7.04 -2.91 -0.02 -0.18 16 38 H 0.14 0.23 7.60 -2.91 -0.02 0.20 16 39 H 0.16 -0.77 7.59 -2.91 -0.02 -0.79 16 40 H 0.16 -1.03 4.88 -2.91 -0.01 -1.04 16 41 H 0.12 -0.20 4.96 -2.39 -0.01 -0.21 16 42 H 0.39 -2.62 8.70 -74.06 -0.64 -3.27 16 43 H 0.12 0.19 8.06 -2.91 -0.02 0.17 16 44 H 0.14 -0.35 7.40 -2.91 -0.02 -0.37 16 Total: 0.00 -11.54 376.33 8.45 -3.09 By element: Atomic # 1 Polarization: -5.79 SS G_CDS: 1.11 Total: -4.68 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 4.40 Total: 10.52 kcal Atomic # 8 Polarization: 0.05 SS G_CDS: -1.91 Total: -1.87 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 2.26 Total: -0.41 kcal Atomic # 14 Polarization: -9.26 SS G_CDS: 2.59 Total: -6.66 kcal Total: -11.54 8.45 -3.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_15562958.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.481 kcal (2) G-P(sol) polarization free energy of solvation -11.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -3.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds