Wall clock time and date at job start Mon Mar 8 2021 09:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86306 * 109.47025 * 2 1 4 4 C 1.86301 * 109.47168 * 240.00037 * 2 1 3 5 5 C 1.86803 * 109.47031 * 119.99982 * 2 1 3 6 6 C 1.38322 * 119.87703 * 90.00254 * 5 2 1 7 7 C 1.38016 * 120.11965 * 180.23460 * 6 5 2 8 8 C 1.39346 * 119.87471 * 359.51277 * 7 6 5 9 9 C 1.48383 * 120.11957 * 180.23942 * 8 7 6 10 10 C 1.39320 * 120.08428 * 359.97127 * 9 8 7 11 11 C 1.38036 * 119.94780 * 179.72887 * 10 9 8 12 12 C 1.50701 * 119.94118 * 180.27853 * 11 10 9 13 13 O 1.42895 * 109.46765 * 255.27607 * 12 11 10 14 14 Si 1.86290 * 109.47338 * 135.27166 * 12 11 10 15 15 H 1.48502 * 109.47313 * 60.00011 * 14 12 11 16 16 H 1.48504 * 109.47260 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47604 * 300.00082 * 14 12 11 18 18 C 1.38459 * 120.12059 * 0.54925 * 11 10 9 19 19 F 1.35098 * 119.91401 * 179.70700 * 18 11 10 20 20 C 1.38790 * 120.17219 * 359.72518 * 18 11 10 21 21 F 1.35094 * 119.97520 * 180.02562 * 20 18 11 22 22 C 1.38150 * 120.04927 * 0.02562 * 20 18 11 23 23 C 1.39343 * 119.75958 * 0.48032 * 8 7 6 24 24 C 1.38016 * 119.87713 * 359.75325 * 23 8 7 25 25 H 1.08996 * 109.47119 * 299.99839 * 1 2 3 26 26 H 1.08996 * 109.47016 * 59.99963 * 1 2 3 27 27 H 1.09000 * 109.46951 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46900 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46858 * 299.99646 * 3 2 1 30 30 H 1.08996 * 109.47041 * 60.00113 * 3 2 1 31 31 H 1.09004 * 109.46623 * 300.00053 * 4 2 1 32 32 H 1.08996 * 109.46889 * 59.99600 * 4 2 1 33 33 H 1.08997 * 109.46762 * 180.02562 * 4 2 1 34 34 H 1.08002 * 119.93718 * 359.94969 * 6 5 2 35 35 H 1.07998 * 120.06292 * 179.72237 * 7 6 5 36 36 H 1.07998 * 120.02972 * 359.97438 * 10 9 8 37 37 H 1.09004 * 109.46677 * 15.27159 * 12 11 10 38 38 H 0.96697 * 113.99773 * 299.99683 * 13 12 11 39 39 H 1.08000 * 120.05915 * 179.97438 * 22 20 18 40 40 H 1.08004 * 120.05920 * 179.77090 * 23 8 7 41 41 H 1.07992 * 119.93877 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4857 -0.8806 1.5253 6 6 2.7154 -2.2441 1.4882 7 6 3.1708 -2.9006 2.6135 8 6 3.4089 -2.1855 3.7856 9 6 3.9036 -2.8849 4.9971 10 6 4.1310 -4.2591 4.9663 11 6 4.5966 -4.9060 6.0933 12 6 4.8484 -6.3914 6.0579 13 8 3.8017 -7.0687 6.7561 14 14 6.4814 -6.7640 6.8734 15 1 6.4472 -6.3013 8.2840 16 1 6.7293 -8.2278 6.8390 17 1 7.5692 -6.0601 6.1478 18 6 4.8273 -4.1936 7.2579 19 9 5.2773 -4.8319 8.3602 20 6 4.5970 -2.8255 7.2959 21 9 4.8239 -2.1342 8.4342 22 6 4.1360 -2.1700 6.1706 23 6 3.1759 -0.8121 3.8172 24 6 2.7158 -0.1665 2.6874 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.5740 1.7565 -0.0005 29 1 2.1207 2.2703 -0.8900 30 1 2.1207 2.2703 0.8900 31 1 2.1207 -1.9059 -1.5211 32 1 2.1207 -0.3644 -2.4111 33 1 3.5740 -0.8786 -1.5208 34 1 2.5337 -2.7967 0.5782 35 1 3.3456 -3.9660 2.5848 36 1 3.9469 -4.8172 4.0601 37 1 4.8735 -6.7310 5.0224 38 1 3.7208 -6.8151 7.6857 39 1 3.9563 -1.1055 6.2001 40 1 3.3552 -0.2537 4.7242 41 1 2.5345 0.8978 2.7110 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_15737978.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:21:38 Heat of formation + Delta-G solvation = -111.068304 kcal Electronic energy + Delta-G solvation = -24113.378629 eV Core-core repulsion = 20331.523921 eV Total energy + Delta-G solvation = -3781.854708 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.107 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.74519 -49.75096 -41.05916 -39.46298 -37.70273 -33.73843 -32.76106 -31.83110 -29.93344 -29.33006 -28.51541 -28.46069 -27.29145 -24.71841 -24.05656 -22.80033 -21.82096 -19.36179 -18.91854 -18.34351 -17.91968 -17.62959 -17.37858 -16.51684 -16.18986 -16.01430 -15.74454 -15.63466 -15.38071 -15.18088 -14.66496 -14.50290 -14.35802 -14.26579 -14.12940 -13.96872 -13.90322 -13.63433 -13.41896 -13.35714 -13.26543 -13.14858 -12.99033 -12.93944 -12.52326 -12.16842 -11.92613 -11.31380 -11.13806 -10.96186 -10.94205 -10.73062 -10.41169 -10.04468 -9.91589 -9.12025 -0.74639 -0.24389 0.44593 0.48698 1.06071 1.45808 1.49849 1.63411 1.78768 1.83806 1.93041 2.19945 2.48096 2.56806 2.94690 3.05952 3.17516 3.32767 3.43090 3.61240 3.78383 3.89298 3.98478 4.18834 4.30528 4.38118 4.46326 4.59652 4.64907 4.65490 4.68303 4.69835 4.70993 4.71124 4.72968 4.81488 4.85990 4.94283 5.06873 5.31822 5.39988 5.44103 5.49356 5.52887 5.53885 5.55052 5.98661 6.36298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.363 4.363 6 C -0.086 4.086 7 C -0.114 4.114 8 C -0.045 4.045 9 C -0.017 4.017 10 C -0.074 4.074 11 C -0.117 4.117 12 C -0.078 4.078 13 O -0.531 6.531 14 Si 0.933 3.067 15 H -0.228 1.228 16 H -0.250 1.250 17 H -0.249 1.249 18 C 0.055 3.945 19 F -0.117 7.117 20 C 0.083 3.917 21 F -0.123 7.123 22 C -0.120 4.120 23 C -0.116 4.116 24 C -0.086 4.086 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.148 0.852 37 H 0.126 0.874 38 H 0.378 0.622 39 H 0.152 0.848 40 H 0.123 0.877 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.875 1.535 -4.017 4.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.252 2.748 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.404 4.404 6 C -0.104 4.104 7 C -0.132 4.132 8 C -0.046 4.046 9 C -0.018 4.018 10 C -0.092 4.092 11 C -0.118 4.118 12 C -0.188 4.188 13 O -0.336 6.336 14 Si 0.753 3.247 15 H -0.151 1.151 16 H -0.174 1.174 17 H -0.173 1.173 18 C 0.035 3.965 19 F -0.096 7.096 20 C 0.063 3.937 21 F -0.101 7.101 22 C -0.139 4.139 23 C -0.134 4.134 24 C -0.104 4.104 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.165 0.835 37 H 0.144 0.856 38 H 0.225 0.775 39 H 0.169 0.831 40 H 0.141 0.859 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.119 1.042 -4.043 4.177 hybrid contribution -0.181 0.426 0.943 1.051 sum -0.301 1.468 -3.100 3.443 Atomic orbital electron populations 1.26129 1.20418 1.04626 1.04540 0.78186 0.66887 0.66122 0.63652 1.26142 1.06480 1.18556 1.04617 1.26138 1.06479 1.08067 1.15084 1.27516 1.03090 0.99543 1.10288 1.21045 0.97021 0.94609 0.97714 1.21313 0.99548 0.99821 0.92528 1.18601 1.00327 0.93457 0.92166 1.18678 0.97728 0.92811 0.92554 1.21080 0.96911 0.93217 0.97993 1.20180 1.01557 0.97697 0.92405 1.24974 1.02610 0.87438 1.03797 1.86555 1.53918 1.65613 1.27503 0.86157 0.74681 0.81608 0.82268 1.15053 1.17352 1.17267 1.17671 1.04476 0.89550 0.84842 1.91596 1.86184 1.80551 1.51240 1.17462 1.03805 0.88297 0.84175 1.91572 1.92264 1.78676 1.47629 1.21192 1.00375 1.01621 0.90675 1.21320 0.99595 0.93474 0.98964 1.21040 0.97015 0.99850 0.92487 0.91157 0.90995 0.91135 0.91036 0.90909 0.91159 0.91139 0.90907 0.91029 0.85687 0.85708 0.83485 0.85587 0.77465 0.83086 0.85872 0.85736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.96 8.65 101.05 0.87 1.84 16 2 Si 1.06 -3.53 12.31 -169.99 -2.09 -5.63 16 3 C -0.45 1.12 8.52 101.05 0.86 1.98 16 4 C -0.45 1.16 8.53 101.05 0.86 2.02 16 5 C -0.36 0.47 4.60 -39.52 -0.18 0.29 16 6 C -0.09 0.09 9.28 -39.63 -0.37 -0.28 16 7 C -0.11 0.06 9.43 -39.25 -0.37 -0.31 16 8 C -0.05 -0.01 5.88 -104.90 -0.62 -0.62 16 9 C -0.02 0.00 5.88 -104.90 -0.62 -0.62 16 10 C -0.07 0.04 9.04 -39.25 -0.35 -0.32 16 11 C -0.12 -0.03 4.78 -104.61 -0.50 -0.53 16 12 C -0.08 0.04 2.80 36.01 0.10 0.14 16 13 O -0.53 -0.29 12.88 -35.23 -0.45 -0.74 16 14 Si 0.93 0.26 26.08 -169.99 -4.43 -4.17 16 15 H -0.23 -0.29 5.29 56.52 0.30 0.00 16 16 H -0.25 -0.32 7.11 56.52 0.40 0.08 16 17 H -0.25 -0.26 7.11 56.52 0.40 0.14 16 18 C 0.05 0.09 6.62 -39.30 -0.26 -0.17 16 19 F -0.12 -0.27 12.48 2.25 0.03 -0.24 16 20 C 0.08 0.15 7.30 -39.41 -0.29 -0.14 16 21 F -0.12 -0.38 17.18 2.25 0.04 -0.34 16 22 C -0.12 -0.04 9.40 -39.20 -0.37 -0.40 16 23 C -0.12 0.03 9.43 -39.25 -0.37 -0.34 16 24 C -0.09 0.07 9.28 -39.63 -0.37 -0.30 16 25 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 26 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 27 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 28 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 29 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 30 H 0.07 -0.19 7.67 -51.93 -0.40 -0.58 16 31 H 0.07 -0.20 7.67 -51.93 -0.40 -0.59 16 32 H 0.07 -0.18 7.96 -51.93 -0.41 -0.60 16 33 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 34 H 0.13 -0.37 7.40 -52.49 -0.39 -0.75 16 35 H 0.13 -0.31 6.20 -52.49 -0.33 -0.63 16 36 H 0.15 -0.39 6.14 -52.49 -0.32 -0.72 16 37 H 0.13 -0.31 7.77 -51.93 -0.40 -0.71 16 38 H 0.38 -0.69 8.40 45.56 0.38 -0.31 16 39 H 0.15 -0.23 6.20 -52.49 -0.33 -0.56 16 40 H 0.12 -0.23 6.21 -52.48 -0.33 -0.56 16 41 H 0.12 -0.34 7.40 -52.49 -0.39 -0.72 16 LS Contribution 346.65 15.07 5.22 5.22 Total: 0.00 -5.24 346.65 -8.34 -13.57 By element: Atomic # 1 Polarization: -5.23 SS G_CDS: -4.69 Total: -9.91 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -1.96 Total: 2.24 kcal Atomic # 8 Polarization: -0.29 SS G_CDS: -0.45 Total: -0.74 kcal Atomic # 9 Polarization: -0.65 SS G_CDS: 0.07 Total: -0.58 kcal Atomic # 14 Polarization: -3.27 SS G_CDS: -6.53 Total: -9.80 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -5.24 -8.34 -13.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_15737978.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.495 kcal (2) G-P(sol) polarization free energy of solvation -5.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds