Wall clock time and date at job start Mon Mar 8 2021 09:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86306 * 109.47025 * 2 1 4 4 C 1.86301 * 109.47168 * 240.00037 * 2 1 3 5 5 C 1.86803 * 109.47031 * 119.99982 * 2 1 3 6 6 C 1.38322 * 119.87703 * 90.00254 * 5 2 1 7 7 C 1.38016 * 120.11965 * 180.23460 * 6 5 2 8 8 C 1.39346 * 119.87471 * 359.51277 * 7 6 5 9 9 C 1.48383 * 120.11957 * 180.23942 * 8 7 6 10 10 C 1.39320 * 120.08428 * 359.97127 * 9 8 7 11 11 C 1.38036 * 119.94780 * 179.72887 * 10 9 8 12 12 C 1.50701 * 119.94118 * 180.27853 * 11 10 9 13 13 O 1.42895 * 109.46765 * 255.27607 * 12 11 10 14 14 Si 1.86290 * 109.47338 * 135.27166 * 12 11 10 15 15 H 1.48502 * 109.47313 * 60.00011 * 14 12 11 16 16 H 1.48504 * 109.47260 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47604 * 300.00082 * 14 12 11 18 18 C 1.38459 * 120.12059 * 0.54925 * 11 10 9 19 19 F 1.35098 * 119.91401 * 179.70700 * 18 11 10 20 20 C 1.38790 * 120.17219 * 359.72518 * 18 11 10 21 21 F 1.35094 * 119.97520 * 180.02562 * 20 18 11 22 22 C 1.38150 * 120.04927 * 0.02562 * 20 18 11 23 23 C 1.39343 * 119.75958 * 0.48032 * 8 7 6 24 24 C 1.38016 * 119.87713 * 359.75325 * 23 8 7 25 25 H 1.08996 * 109.47119 * 299.99839 * 1 2 3 26 26 H 1.08996 * 109.47016 * 59.99963 * 1 2 3 27 27 H 1.09000 * 109.46951 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46900 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46858 * 299.99646 * 3 2 1 30 30 H 1.08996 * 109.47041 * 60.00113 * 3 2 1 31 31 H 1.09004 * 109.46623 * 300.00053 * 4 2 1 32 32 H 1.08996 * 109.46889 * 59.99600 * 4 2 1 33 33 H 1.08997 * 109.46762 * 180.02562 * 4 2 1 34 34 H 1.08002 * 119.93718 * 359.94969 * 6 5 2 35 35 H 1.07998 * 120.06292 * 179.72237 * 7 6 5 36 36 H 1.07998 * 120.02972 * 359.97438 * 10 9 8 37 37 H 1.09004 * 109.46677 * 15.27159 * 12 11 10 38 38 H 0.96697 * 113.99773 * 299.99683 * 13 12 11 39 39 H 1.08000 * 120.05915 * 179.97438 * 22 20 18 40 40 H 1.08004 * 120.05920 * 179.77090 * 23 8 7 41 41 H 1.07992 * 119.93877 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4857 -0.8806 1.5253 6 6 2.7154 -2.2441 1.4882 7 6 3.1708 -2.9006 2.6135 8 6 3.4089 -2.1855 3.7856 9 6 3.9036 -2.8849 4.9971 10 6 4.1310 -4.2591 4.9663 11 6 4.5966 -4.9060 6.0933 12 6 4.8484 -6.3914 6.0579 13 8 3.8017 -7.0687 6.7561 14 14 6.4814 -6.7640 6.8734 15 1 6.4472 -6.3013 8.2840 16 1 6.7293 -8.2278 6.8390 17 1 7.5692 -6.0601 6.1478 18 6 4.8273 -4.1936 7.2579 19 9 5.2773 -4.8319 8.3602 20 6 4.5970 -2.8255 7.2959 21 9 4.8239 -2.1342 8.4342 22 6 4.1360 -2.1700 6.1706 23 6 3.1759 -0.8121 3.8172 24 6 2.7158 -0.1665 2.6874 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.5740 1.7565 -0.0005 29 1 2.1207 2.2703 -0.8900 30 1 2.1207 2.2703 0.8900 31 1 2.1207 -1.9059 -1.5211 32 1 2.1207 -0.3644 -2.4111 33 1 3.5740 -0.8786 -1.5208 34 1 2.5337 -2.7967 0.5782 35 1 3.3456 -3.9660 2.5848 36 1 3.9469 -4.8172 4.0601 37 1 4.8735 -6.7310 5.0224 38 1 3.7208 -6.8151 7.6857 39 1 3.9563 -1.1055 6.2001 40 1 3.3552 -0.2537 4.7242 41 1 2.5345 0.8978 2.7110 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_15737978.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:21:37 Heat of formation + Delta-G solvation = -100.560574 kcal Electronic energy + Delta-G solvation = -24112.922979 eV Core-core repulsion = 20331.523921 eV Total energy + Delta-G solvation = -3781.399058 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.86704 -49.89382 -41.01091 -39.38138 -37.68533 -33.68998 -32.72581 -31.72922 -29.81245 -29.17170 -28.28501 -28.24534 -27.26801 -24.68504 -23.99948 -22.73414 -21.76808 -19.39167 -18.95378 -18.37529 -17.92893 -17.63629 -17.42094 -16.56479 -16.25832 -16.03046 -15.67726 -15.57101 -15.39889 -15.11194 -14.69591 -14.37939 -14.26090 -14.14791 -14.02615 -13.78143 -13.70655 -13.55692 -13.31173 -13.18222 -13.07424 -12.96526 -12.91056 -12.83187 -12.52305 -12.23585 -11.79612 -11.37180 -11.01167 -10.78302 -10.73004 -10.69515 -10.37305 -10.06250 -9.80004 -9.06984 -0.73214 -0.25235 0.54539 0.56272 1.06658 1.39840 1.44285 1.86025 1.87048 2.02450 2.05089 2.28309 2.53978 2.69248 3.03304 3.05534 3.18288 3.35437 3.50465 3.62478 3.85571 4.01777 4.12900 4.25788 4.34539 4.52801 4.56409 4.64928 4.75343 4.85353 4.86749 4.87727 4.90491 4.91133 4.92662 4.93582 4.98448 5.02692 5.20701 5.39552 5.55188 5.60757 5.62280 5.63249 5.70332 5.74039 6.12975 6.46473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.128 2.872 3 C -0.465 4.465 4 C -0.462 4.462 5 C -0.374 4.374 6 C -0.098 4.098 7 C -0.123 4.123 8 C -0.061 4.061 9 C -0.018 4.018 10 C -0.069 4.069 11 C -0.117 4.117 12 C -0.070 4.070 13 O -0.542 6.542 14 Si 0.955 3.045 15 H -0.248 1.248 16 H -0.264 1.264 17 H -0.260 1.260 18 C 0.040 3.960 19 F -0.126 7.126 20 C 0.063 3.937 21 F -0.136 7.136 22 C -0.119 4.119 23 C -0.130 4.130 24 C -0.100 4.100 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.173 0.827 37 H 0.151 0.849 38 H 0.386 0.614 39 H 0.164 0.836 40 H 0.132 0.868 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.422 1.442 -5.538 5.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.315 2.685 3 C -0.571 4.571 4 C -0.569 4.569 5 C -0.413 4.413 6 C -0.116 4.116 7 C -0.141 4.141 8 C -0.061 4.061 9 C -0.019 4.019 10 C -0.087 4.087 11 C -0.119 4.119 12 C -0.180 4.180 13 O -0.349 6.349 14 Si 0.779 3.221 15 H -0.172 1.172 16 H -0.188 1.188 17 H -0.184 1.184 18 C 0.020 3.980 19 F -0.105 7.105 20 C 0.043 3.957 21 F -0.115 7.115 22 C -0.138 4.138 23 C -0.147 4.147 24 C -0.118 4.118 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.190 0.810 37 H 0.169 0.831 38 H 0.234 0.766 39 H 0.182 0.818 40 H 0.150 0.850 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.664 0.948 -5.549 5.669 hybrid contribution -0.017 0.488 1.394 1.477 sum -0.681 1.436 -4.156 4.449 Atomic orbital electron populations 1.26318 1.21866 1.04472 1.04445 0.77139 0.64977 0.64518 0.61865 1.26311 1.06433 1.19635 1.04765 1.26276 1.06462 1.08570 1.15628 1.28000 1.02480 0.99841 1.11011 1.21374 0.96868 0.94971 0.98381 1.21605 0.99254 1.00851 0.92382 1.18715 1.01194 0.93794 0.92421 1.18804 0.97396 0.93177 0.92474 1.21378 0.95700 0.93133 0.98496 1.20275 1.01484 0.98006 0.92095 1.24932 1.01341 0.86928 1.04823 1.86528 1.54065 1.65923 1.28343 0.85844 0.75158 0.80091 0.80987 1.17209 1.18827 1.18432 1.17907 1.05225 0.89725 0.85182 1.91570 1.86431 1.80691 1.51804 1.17680 1.05117 0.88566 0.84310 1.91530 1.92570 1.78971 1.48415 1.21357 0.99771 1.02355 0.90304 1.21565 0.99760 0.93719 0.99705 1.21326 0.97086 1.00779 0.92565 0.91511 0.90860 0.91324 0.91281 0.90853 0.90980 0.90718 0.90861 0.91207 0.83893 0.83975 0.81008 0.83119 0.76553 0.81831 0.85022 0.84351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.25 8.65 113.37 0.98 3.23 16 2 Si 1.13 -8.49 12.31 68.60 0.84 -7.64 16 3 C -0.46 2.59 8.52 113.37 0.97 3.55 16 4 C -0.46 2.85 8.53 113.37 0.97 3.81 16 5 C -0.37 1.27 4.60 22.31 0.10 1.37 16 6 C -0.10 0.31 9.28 22.24 0.21 0.52 16 7 C -0.12 0.27 9.43 22.48 0.21 0.48 16 8 C -0.06 0.01 5.88 -20.04 -0.12 -0.11 16 9 C -0.02 0.00 5.88 -20.04 -0.12 -0.12 16 10 C -0.07 0.13 9.04 22.48 0.20 0.34 16 11 C -0.12 -0.04 4.78 -19.86 -0.09 -0.14 16 12 C -0.07 0.11 2.80 71.24 0.20 0.31 16 13 O -0.54 -0.36 12.88 -148.98 -1.92 -2.28 16 14 Si 0.96 1.18 26.08 68.60 1.79 2.97 16 15 H -0.25 -1.07 5.29 99.48 0.53 -0.54 16 16 H -0.26 -0.87 7.11 99.48 0.71 -0.17 16 17 H -0.26 -0.74 7.11 99.48 0.71 -0.03 16 18 C 0.04 0.17 6.62 22.45 0.15 0.31 16 19 F -0.13 -0.79 12.48 44.97 0.56 -0.23 16 20 C 0.06 0.30 7.30 22.38 0.16 0.46 16 21 F -0.14 -1.07 17.18 44.97 0.77 -0.30 16 22 C -0.12 -0.13 9.40 22.52 0.21 0.08 16 23 C -0.13 0.09 9.43 22.48 0.21 0.30 16 24 C -0.10 0.21 9.28 22.24 0.21 0.42 16 25 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 26 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 27 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 28 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 29 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 30 H 0.07 -0.42 7.67 -2.39 -0.02 -0.44 16 31 H 0.07 -0.51 7.67 -2.38 -0.02 -0.53 16 32 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 33 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 34 H 0.14 -1.07 7.40 -2.91 -0.02 -1.09 16 35 H 0.14 -0.96 6.20 -2.91 -0.02 -0.98 16 36 H 0.17 -1.29 6.14 -2.91 -0.02 -1.31 16 37 H 0.15 -1.02 7.77 -2.38 -0.02 -1.04 16 38 H 0.39 -1.28 8.40 -74.06 -0.62 -1.90 16 39 H 0.16 -0.41 6.20 -2.91 -0.02 -0.43 16 40 H 0.13 -0.48 6.21 -2.91 -0.02 -0.50 16 41 H 0.14 -0.81 7.40 -2.91 -0.02 -0.84 16 Total: 0.00 -12.57 346.65 7.51 -5.06 By element: Atomic # 1 Polarization: -13.43 SS G_CDS: 1.01 Total: -12.42 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 4.45 Total: 14.83 kcal Atomic # 8 Polarization: -0.36 SS G_CDS: -1.92 Total: -2.28 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 1.33 Total: -0.52 kcal Atomic # 14 Polarization: -7.31 SS G_CDS: 2.63 Total: -4.67 kcal Total: -12.57 7.51 -5.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_15737978.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.499 kcal (2) G-P(sol) polarization free energy of solvation -12.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds