Wall clock time and date at job start Mon Mar 8 2021 09:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86298 * 109.47085 * 2 1 4 4 C 1.86296 * 109.47138 * 240.00055 * 2 1 3 5 5 C 1.86802 * 109.47284 * 120.00142 * 2 1 3 6 6 C 1.38316 * 119.88173 * 89.99947 * 5 2 1 7 7 C 1.38014 * 120.12644 * 180.02562 * 6 5 2 8 8 C 1.39342 * 119.87727 * 359.97438 * 7 6 5 9 9 C 1.48373 * 120.12574 * 179.97438 * 8 7 6 10 10 C 1.39278 * 120.11650 * 129.99823 * 9 8 7 11 11 C 1.38257 * 119.86444 * 180.02562 * 10 9 8 12 12 F 1.35104 * 119.95229 * 180.02562 * 11 10 9 13 13 C 1.38523 * 120.09753 * 0.26973 * 11 10 9 14 14 C 1.50699 * 119.88326 * 179.72602 * 13 11 10 15 15 O 1.42900 * 109.47456 * 285.00232 * 14 13 11 16 16 Si 1.86304 * 109.46849 * 165.00615 * 14 13 11 17 17 H 1.48503 * 109.47376 * 60.00124 * 16 14 13 18 18 H 1.48506 * 109.46969 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47119 * 299.99597 * 16 14 13 20 20 C 1.38290 * 120.23099 * 359.45490 * 13 11 10 21 21 C 1.38123 * 120.13287 * 0.54596 * 20 13 11 22 22 Cl 1.73607 * 120.05021 * 179.70060 * 21 20 13 23 23 C 1.39348 * 119.75253 * 0.25340 * 8 7 6 24 24 C 1.38014 * 119.87831 * 359.48797 * 23 8 7 25 25 H 1.09006 * 109.46886 * 299.99937 * 1 2 3 26 26 H 1.08989 * 109.47167 * 59.99928 * 1 2 3 27 27 H 1.09003 * 109.47101 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47573 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47433 * 299.99973 * 3 2 1 30 30 H 1.09006 * 109.47208 * 60.00260 * 3 2 1 31 31 H 1.08995 * 109.47133 * 300.00105 * 4 2 1 32 32 H 1.09003 * 109.47107 * 59.99774 * 4 2 1 33 33 H 1.09002 * 109.47541 * 179.97438 * 4 2 1 34 34 H 1.08006 * 119.93510 * 0.02562 * 6 5 2 35 35 H 1.07997 * 120.06175 * 180.02562 * 7 6 5 36 36 H 1.08002 * 120.06743 * 0.04611 * 10 9 8 37 37 H 1.08996 * 109.47454 * 45.00447 * 14 13 11 38 38 H 0.96703 * 114.00245 * 300.00380 * 15 14 13 39 39 H 1.08002 * 119.93434 * 180.27143 * 20 13 11 40 40 H 1.08006 * 120.05776 * 179.72990 * 23 8 7 41 41 H 1.08004 * 119.93818 * 180.27777 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4857 -0.8806 1.5252 6 6 2.7154 -2.2441 1.4882 7 6 3.1750 -2.8999 2.6122 8 6 3.4081 -2.1858 3.7858 9 6 3.9017 -2.8853 4.9976 10 6 5.0048 -2.3910 5.6894 11 6 5.4606 -3.0473 6.8176 12 9 6.5302 -2.5691 7.4903 13 6 4.8253 -4.1974 7.2565 14 6 5.3300 -4.9124 8.4833 15 8 6.5300 -5.6191 8.1630 16 14 4.0385 -6.1178 9.0748 17 1 3.7588 -7.1085 8.0045 18 1 4.5356 -6.8220 10.2842 19 1 2.7915 -5.3834 9.4078 20 6 3.7262 -4.6886 6.5760 21 6 3.2628 -4.0406 5.4477 22 17 1.8875 -4.6634 4.5906 23 6 3.1705 -0.8131 3.8188 24 6 2.7160 -0.1666 2.6873 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.5740 1.7565 0.0005 29 1 2.1207 2.2703 -0.8899 30 1 2.1207 2.2703 0.8900 31 1 2.1207 -1.9058 -1.5211 32 1 2.1206 -0.3644 -2.4111 33 1 3.5740 -0.8778 -1.5214 34 1 2.5348 -2.7965 0.5779 35 1 3.3544 -3.9644 2.5820 36 1 5.5029 -1.4966 5.3453 37 1 5.5354 -4.1853 9.2690 38 1 6.4216 -6.2843 7.4695 39 1 3.2319 -5.5832 6.9249 40 1 3.3453 -0.2555 4.7271 41 1 2.5358 0.8980 2.7105 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_15738020.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:21:44 Heat of formation + Delta-G solvation = -82.632394 kcal Electronic energy + Delta-G solvation = -23893.076361 eV Core-core repulsion = 20222.108910 eV Total energy + Delta-G solvation = -3670.967451 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 338.077 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.97388 -41.08097 -39.58421 -37.97838 -37.32581 -34.06952 -32.07473 -31.58230 -30.70289 -29.52885 -28.47343 -28.43618 -26.85215 -24.51511 -23.62841 -23.14054 -21.98201 -19.22533 -18.41488 -17.88426 -17.48437 -17.08929 -16.66308 -16.28528 -15.92080 -15.90934 -15.67898 -15.26162 -14.71555 -14.61082 -14.51127 -14.27206 -14.15723 -14.12846 -14.05247 -13.84888 -13.54472 -13.29585 -13.27516 -13.22353 -13.12856 -12.86039 -12.51724 -12.42694 -12.25476 -12.01396 -11.88735 -11.79244 -11.10370 -10.93482 -10.86549 -10.58762 -10.49257 -9.86057 -9.81550 -9.32518 -0.54481 -0.21445 0.37979 0.52141 0.94393 0.98540 1.29468 1.41354 1.67171 1.80031 1.81867 1.89496 2.11769 2.51262 2.85465 2.97327 3.15915 3.35639 3.47589 3.56921 3.90014 3.99976 4.06220 4.24966 4.31092 4.44457 4.50472 4.56349 4.60276 4.67705 4.68330 4.71181 4.72821 4.73508 4.74646 4.81088 4.86044 4.93265 5.12507 5.33892 5.41826 5.46612 5.49570 5.51705 5.54756 5.59131 6.05445 6.41380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.059 2.941 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.360 4.360 6 C -0.089 4.089 7 C -0.100 4.100 8 C -0.054 4.054 9 C 0.002 3.998 10 C -0.132 4.132 11 C 0.139 3.861 12 F -0.122 7.122 13 C -0.146 4.146 14 C -0.080 4.080 15 O -0.531 6.531 16 Si 0.947 3.053 17 H -0.247 1.247 18 H -0.246 1.246 19 H -0.244 1.244 20 C -0.088 4.088 21 C -0.036 4.036 22 Cl -0.047 7.047 23 C -0.107 4.107 24 C -0.089 4.089 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.150 0.850 37 H 0.123 0.877 38 H 0.377 0.623 39 H 0.145 0.855 40 H 0.122 0.878 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.594 0.485 -1.967 2.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.251 2.749 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.402 4.402 6 C -0.107 4.107 7 C -0.118 4.118 8 C -0.054 4.054 9 C 0.001 3.999 10 C -0.151 4.151 11 C 0.119 3.881 12 F -0.100 7.100 13 C -0.147 4.147 14 C -0.190 4.190 15 O -0.336 6.336 16 Si 0.768 3.232 17 H -0.171 1.171 18 H -0.169 1.169 19 H -0.167 1.167 20 C -0.107 4.107 21 C -0.063 4.063 22 Cl -0.017 7.017 23 C -0.125 4.125 24 C -0.107 4.107 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.168 0.832 37 H 0.141 0.859 38 H 0.224 0.776 39 H 0.163 0.837 40 H 0.140 0.860 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.040 0.218 -1.197 2.375 hybrid contribution 0.253 -0.039 -0.352 0.435 sum -1.787 0.179 -1.549 2.372 Atomic orbital electron populations 1.26124 1.20437 1.04602 1.04510 0.78199 0.66899 0.66135 0.63710 1.26136 1.06475 1.18526 1.04592 1.26137 1.06481 1.08061 1.15070 1.27488 1.02959 0.99480 1.10232 1.21009 0.97452 0.94580 0.97660 1.21312 0.98432 0.99722 0.92307 1.18545 1.01336 0.93572 0.91962 1.18489 0.93956 0.92872 0.94583 1.21227 0.97331 1.01848 0.94707 1.17349 0.85765 0.93219 0.91741 1.91571 1.52393 1.87255 1.78799 1.20371 0.97321 0.96842 1.00182 1.24978 0.96179 1.01418 0.96452 1.86587 1.31422 1.54798 1.60770 0.85723 0.77261 0.78880 0.81340 1.17084 1.16908 1.16714 1.20845 0.95687 1.00214 0.93935 1.20874 0.93090 0.96347 0.95970 1.98403 1.41055 1.86186 1.76102 1.21254 0.99418 0.92989 0.98871 1.21009 0.97500 0.99759 0.92472 0.91155 0.91023 0.91161 0.91033 0.90934 0.91159 0.91156 0.90940 0.91029 0.85814 0.85935 0.83195 0.85949 0.77577 0.83717 0.85982 0.85780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.75 8.65 101.05 0.87 1.63 16 2 Si 1.06 -2.98 12.31 -169.99 -2.09 -5.07 16 3 C -0.45 0.95 8.52 101.05 0.86 1.81 16 4 C -0.45 0.92 8.52 101.05 0.86 1.79 16 5 C -0.36 0.22 4.60 -39.52 -0.18 0.04 16 6 C -0.09 0.00 9.28 -39.63 -0.37 -0.37 16 7 C -0.10 -0.09 8.18 -39.25 -0.32 -0.41 16 8 C -0.05 -0.06 5.11 -104.90 -0.54 -0.60 16 9 C 0.00 0.00 5.48 -104.88 -0.57 -0.57 16 10 C -0.13 -0.08 9.49 -39.19 -0.37 -0.46 16 11 C 0.14 0.19 7.24 -39.47 -0.29 -0.10 16 12 F -0.12 -0.33 16.74 2.25 0.04 -0.29 16 13 C -0.15 -0.06 5.27 -104.50 -0.55 -0.61 16 14 C -0.08 0.03 2.44 36.01 0.09 0.11 16 15 O -0.53 -0.23 12.88 -35.23 -0.45 -0.69 16 16 Si 0.95 -1.01 25.47 -169.99 -4.33 -5.34 16 17 H -0.25 0.36 6.74 56.52 0.38 0.74 16 18 H -0.25 -0.07 7.11 56.52 0.40 0.33 16 19 H -0.24 0.11 7.11 56.52 0.40 0.52 16 20 C -0.09 -0.01 8.43 -39.60 -0.33 -0.35 16 21 C -0.04 -0.04 6.28 -39.16 -0.25 -0.28 16 22 Cl -0.05 -0.05 25.98 -51.86 -1.35 -1.40 16 23 C -0.11 -0.05 9.52 -39.25 -0.37 -0.43 16 24 C -0.09 0.02 9.28 -39.63 -0.37 -0.35 16 25 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 26 H 0.07 -0.13 7.96 -51.94 -0.41 -0.55 16 27 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 28 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 29 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 30 H 0.07 -0.16 7.67 -51.93 -0.40 -0.56 16 31 H 0.07 -0.15 7.67 -51.93 -0.40 -0.55 16 32 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 33 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 34 H 0.12 -0.22 7.40 -52.48 -0.39 -0.61 16 35 H 0.12 0.04 7.15 -52.49 -0.38 -0.33 16 36 H 0.15 -0.10 8.04 -52.49 -0.42 -0.53 16 37 H 0.12 -0.08 7.89 -51.93 -0.41 -0.49 16 38 H 0.38 -1.18 8.70 45.56 0.40 -0.78 16 39 H 0.15 -0.17 4.86 -52.49 -0.26 -0.43 16 40 H 0.12 -0.10 8.05 -52.48 -0.42 -0.52 16 41 H 0.12 -0.26 7.40 -52.48 -0.39 -0.65 16 LS Contribution 361.19 15.07 5.44 5.44 Total: 0.00 -4.80 361.19 -9.34 -14.14 By element: Atomic # 1 Polarization: -2.88 SS G_CDS: -4.77 Total: -7.65 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -1.83 Total: 0.86 kcal Atomic # 8 Polarization: -0.23 SS G_CDS: -0.45 Total: -0.69 kcal Atomic # 9 Polarization: -0.33 SS G_CDS: 0.04 Total: -0.29 kcal Atomic # 14 Polarization: -3.99 SS G_CDS: -6.42 Total: -10.41 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -1.35 Total: -1.40 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -4.80 -9.34 -14.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_15738020.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.496 kcal (2) G-P(sol) polarization free energy of solvation -4.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds