Wall clock time and date at job start Mon Mar 8 2021 09:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86298 * 109.47085 * 2 1 4 4 C 1.86296 * 109.47138 * 240.00055 * 2 1 3 5 5 C 1.86802 * 109.47284 * 120.00142 * 2 1 3 6 6 C 1.38316 * 119.88173 * 89.99947 * 5 2 1 7 7 C 1.38014 * 120.12644 * 180.02562 * 6 5 2 8 8 C 1.39342 * 119.87727 * 359.97438 * 7 6 5 9 9 C 1.48373 * 120.12574 * 179.97438 * 8 7 6 10 10 C 1.39278 * 120.11650 * 129.99823 * 9 8 7 11 11 C 1.38257 * 119.86444 * 180.02562 * 10 9 8 12 12 F 1.35104 * 119.95229 * 180.02562 * 11 10 9 13 13 C 1.38523 * 120.09753 * 0.26973 * 11 10 9 14 14 C 1.50699 * 119.88326 * 179.72602 * 13 11 10 15 15 O 1.42900 * 109.47456 * 285.00232 * 14 13 11 16 16 Si 1.86304 * 109.46849 * 165.00615 * 14 13 11 17 17 H 1.48503 * 109.47376 * 60.00124 * 16 14 13 18 18 H 1.48506 * 109.46969 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47119 * 299.99597 * 16 14 13 20 20 C 1.38290 * 120.23099 * 359.45490 * 13 11 10 21 21 C 1.38123 * 120.13287 * 0.54596 * 20 13 11 22 22 Cl 1.73607 * 120.05021 * 179.70060 * 21 20 13 23 23 C 1.39348 * 119.75253 * 0.25340 * 8 7 6 24 24 C 1.38014 * 119.87831 * 359.48797 * 23 8 7 25 25 H 1.09006 * 109.46886 * 299.99937 * 1 2 3 26 26 H 1.08989 * 109.47167 * 59.99928 * 1 2 3 27 27 H 1.09003 * 109.47101 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47573 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47433 * 299.99973 * 3 2 1 30 30 H 1.09006 * 109.47208 * 60.00260 * 3 2 1 31 31 H 1.08995 * 109.47133 * 300.00105 * 4 2 1 32 32 H 1.09003 * 109.47107 * 59.99774 * 4 2 1 33 33 H 1.09002 * 109.47541 * 179.97438 * 4 2 1 34 34 H 1.08006 * 119.93510 * 0.02562 * 6 5 2 35 35 H 1.07997 * 120.06175 * 180.02562 * 7 6 5 36 36 H 1.08002 * 120.06743 * 0.04611 * 10 9 8 37 37 H 1.08996 * 109.47454 * 45.00447 * 14 13 11 38 38 H 0.96703 * 114.00245 * 300.00380 * 15 14 13 39 39 H 1.08002 * 119.93434 * 180.27143 * 20 13 11 40 40 H 1.08006 * 120.05776 * 179.72990 * 23 8 7 41 41 H 1.08004 * 119.93818 * 180.27777 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4857 -0.8806 1.5252 6 6 2.7154 -2.2441 1.4882 7 6 3.1750 -2.8999 2.6122 8 6 3.4081 -2.1858 3.7858 9 6 3.9017 -2.8853 4.9976 10 6 5.0048 -2.3910 5.6894 11 6 5.4606 -3.0473 6.8176 12 9 6.5302 -2.5691 7.4903 13 6 4.8253 -4.1974 7.2565 14 6 5.3300 -4.9124 8.4833 15 8 6.5300 -5.6191 8.1630 16 14 4.0385 -6.1178 9.0748 17 1 3.7588 -7.1085 8.0045 18 1 4.5356 -6.8220 10.2842 19 1 2.7915 -5.3834 9.4078 20 6 3.7262 -4.6886 6.5760 21 6 3.2628 -4.0406 5.4477 22 17 1.8875 -4.6634 4.5906 23 6 3.1705 -0.8131 3.8188 24 6 2.7160 -0.1666 2.6873 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.5740 1.7565 0.0005 29 1 2.1207 2.2703 -0.8899 30 1 2.1207 2.2703 0.8900 31 1 2.1207 -1.9058 -1.5211 32 1 2.1206 -0.3644 -2.4111 33 1 3.5740 -0.8778 -1.5214 34 1 2.5348 -2.7965 0.5779 35 1 3.3544 -3.9644 2.5820 36 1 5.5029 -1.4966 5.3453 37 1 5.5354 -4.1853 9.2690 38 1 6.4216 -6.2843 7.4695 39 1 3.2319 -5.5832 6.9249 40 1 3.3453 -0.2555 4.7271 41 1 2.5358 0.8980 2.7105 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_15738020.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:21:44 Heat of formation + Delta-G solvation = -71.199608 kcal Electronic energy + Delta-G solvation = -23892.580599 eV Core-core repulsion = 20222.108910 eV Total energy + Delta-G solvation = -3670.471688 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 338.077 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.11265 -41.09734 -39.56008 -37.99590 -37.36272 -34.06947 -32.05712 -31.59646 -30.68682 -29.35828 -28.28197 -28.26204 -26.84504 -24.53899 -23.62471 -23.12080 -21.99504 -19.24843 -18.43205 -17.92788 -17.50892 -17.13120 -16.69530 -16.27706 -15.92210 -15.89147 -15.67550 -15.26733 -14.71865 -14.61087 -14.47727 -14.19458 -14.13093 -14.01755 -13.92241 -13.71176 -13.47082 -13.20236 -13.11820 -13.10361 -12.95703 -12.83040 -12.54373 -12.44266 -12.21259 -12.00819 -11.83746 -11.79460 -10.96983 -10.77419 -10.74583 -10.55911 -10.47796 -9.90605 -9.79943 -9.32896 -0.57326 -0.26192 0.39601 0.53938 0.89188 1.03937 1.38005 1.48228 1.84830 1.85710 2.00785 2.03717 2.15226 2.67435 2.86102 2.95734 3.15737 3.40667 3.47552 3.58952 3.89227 4.04716 4.09206 4.23229 4.33360 4.47386 4.51338 4.57566 4.62307 4.79255 4.83473 4.85548 4.85838 4.89667 4.90940 4.91382 4.91808 4.95990 5.16927 5.33273 5.47687 5.53718 5.59661 5.60392 5.68769 5.72146 6.10460 6.60240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.126 2.874 3 C -0.462 4.462 4 C -0.463 4.463 5 C -0.370 4.370 6 C -0.100 4.100 7 C -0.113 4.113 8 C -0.067 4.067 9 C -0.003 4.003 10 C -0.131 4.131 11 C 0.124 3.876 12 F -0.133 7.133 13 C -0.143 4.143 14 C -0.084 4.084 15 O -0.548 6.548 16 Si 0.980 3.020 17 H -0.237 1.237 18 H -0.266 1.266 19 H -0.251 1.251 20 C -0.088 4.088 21 C -0.042 4.042 22 Cl -0.049 7.049 23 C -0.119 4.119 24 C -0.099 4.099 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.139 0.861 35 H 0.122 0.878 36 H 0.159 0.841 37 H 0.122 0.878 38 H 0.391 0.609 39 H 0.159 0.841 40 H 0.130 0.870 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.009 0.614 -2.539 3.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.313 2.687 3 C -0.569 4.569 4 C -0.570 4.570 5 C -0.410 4.410 6 C -0.118 4.118 7 C -0.131 4.131 8 C -0.067 4.067 9 C -0.004 4.004 10 C -0.150 4.150 11 C 0.105 3.895 12 F -0.111 7.111 13 C -0.144 4.144 14 C -0.193 4.193 15 O -0.355 6.355 16 Si 0.802 3.198 17 H -0.160 1.160 18 H -0.190 1.190 19 H -0.175 1.175 20 C -0.106 4.106 21 C -0.069 4.069 22 Cl -0.020 7.020 23 C -0.137 4.137 24 C -0.116 4.116 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.157 0.843 35 H 0.140 0.860 36 H 0.177 0.823 37 H 0.139 0.861 38 H 0.241 0.759 39 H 0.176 0.824 40 H 0.148 0.852 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.452 0.337 -1.779 3.048 hybrid contribution 0.383 -0.069 -0.189 0.432 sum -2.069 0.268 -1.968 2.868 Atomic orbital electron populations 1.26302 1.21757 1.04398 1.04543 0.77178 0.65088 0.64708 0.61681 1.26270 1.06461 1.19264 1.04880 1.26286 1.06451 1.08466 1.15782 1.28030 1.02288 0.99472 1.11192 1.21294 0.97303 0.95144 0.98016 1.21436 0.98999 0.99899 0.92732 1.18652 1.01983 0.93998 0.92080 1.18566 0.94063 0.93017 0.94736 1.21314 0.97182 1.02061 0.94394 1.17532 0.85898 0.93901 0.92200 1.91539 1.53000 1.87485 1.79100 1.20461 0.97149 0.96504 1.00309 1.25113 0.96362 1.01774 0.96087 1.86548 1.32006 1.55414 1.61534 0.85250 0.76044 0.78101 0.80438 1.16021 1.19013 1.17475 1.20973 0.95524 1.00529 0.93579 1.20996 0.93120 0.96530 0.96241 1.98398 1.41169 1.86178 1.76221 1.21464 0.99629 0.92968 0.99633 1.21323 0.97169 1.00790 0.92361 0.91405 0.90726 0.91500 0.91211 0.90732 0.90845 0.90967 0.90724 0.91243 0.84324 0.85973 0.82302 0.86058 0.75946 0.82398 0.85208 0.84023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.77 8.65 113.37 0.98 2.75 16 2 Si 1.13 -7.08 12.31 68.60 0.84 -6.24 16 3 C -0.46 2.32 8.52 113.37 0.97 3.28 16 4 C -0.46 2.18 8.52 113.37 0.97 3.15 16 5 C -0.37 0.56 4.60 22.31 0.10 0.66 16 6 C -0.10 -0.01 9.28 22.24 0.21 0.20 16 7 C -0.11 -0.27 8.18 22.48 0.18 -0.09 16 8 C -0.07 -0.20 5.11 -20.05 -0.10 -0.30 16 9 C 0.00 -0.01 5.48 -20.03 -0.11 -0.12 16 10 C -0.13 -0.27 9.49 22.52 0.21 -0.05 16 11 C 0.12 0.43 7.24 22.34 0.16 0.59 16 12 F -0.13 -0.85 16.74 44.97 0.75 -0.10 16 13 C -0.14 -0.18 5.27 -19.78 -0.10 -0.28 16 14 C -0.08 0.03 2.44 71.24 0.17 0.20 16 15 O -0.55 -0.63 12.88 -148.98 -1.92 -2.55 16 16 Si 0.98 -2.25 25.47 68.60 1.75 -0.50 16 17 H -0.24 0.95 6.74 99.48 0.67 1.62 16 18 H -0.27 -0.26 7.11 99.48 0.71 0.45 16 19 H -0.25 0.29 7.11 99.48 0.71 0.99 16 20 C -0.09 -0.03 8.43 22.25 0.19 0.15 16 21 C -0.04 -0.10 6.28 22.54 0.14 0.04 16 22 Cl -0.05 -0.12 25.98 -2.72 -0.07 -0.19 16 23 C -0.12 -0.16 9.52 22.48 0.21 0.06 16 24 C -0.10 0.06 9.28 22.24 0.21 0.27 16 25 H 0.07 -0.21 7.96 -2.38 -0.02 -0.23 16 26 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 27 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 28 H 0.07 -0.30 7.96 -2.38 -0.02 -0.32 16 29 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 30 H 0.07 -0.40 7.67 -2.38 -0.02 -0.42 16 31 H 0.07 -0.36 7.67 -2.39 -0.02 -0.38 16 32 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 33 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 34 H 0.14 -0.53 7.40 -2.91 -0.02 -0.56 16 35 H 0.12 0.19 7.15 -2.91 -0.02 0.17 16 36 H 0.16 -0.10 8.04 -2.91 -0.02 -0.12 16 37 H 0.12 -0.07 7.89 -2.39 -0.02 -0.09 16 38 H 0.39 -2.43 8.70 -74.06 -0.64 -3.07 16 39 H 0.16 -0.45 4.86 -2.91 -0.01 -0.46 16 40 H 0.13 -0.16 8.05 -2.91 -0.02 -0.18 16 41 H 0.14 -0.71 7.40 -2.91 -0.02 -0.73 16 Total: 0.00 -10.89 361.19 6.87 -4.02 By element: Atomic # 1 Polarization: -6.10 SS G_CDS: 1.13 Total: -4.97 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 4.39 Total: 10.53 kcal Atomic # 8 Polarization: -0.63 SS G_CDS: -1.92 Total: -2.55 kcal Atomic # 9 Polarization: -0.85 SS G_CDS: 0.75 Total: -0.10 kcal Atomic # 14 Polarization: -9.33 SS G_CDS: 2.59 Total: -6.74 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -0.07 Total: -0.19 kcal Total: -10.89 6.87 -4.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_15738020.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.177 kcal (2) G-P(sol) polarization free energy of solvation -10.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds