Wall clock time and date at job start Mon Mar 8 2021 09:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35964 * 116.99979 * 2 1 4 4 C 1.38677 * 120.00145 * 269.72527 * 3 2 1 5 5 C 1.50702 * 119.89347 * 359.97438 * 4 3 2 6 6 O 1.42901 * 109.47145 * 284.99736 * 5 4 3 7 7 Si 1.86299 * 109.47213 * 165.00062 * 5 4 3 8 8 H 1.48502 * 109.47180 * 59.99527 * 7 5 4 9 9 H 1.48502 * 109.47153 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47101 * 300.00015 * 7 5 4 11 11 C 1.38316 * 120.21516 * 179.71556 * 4 3 2 12 12 C 1.37993 * 120.21726 * 0.56044 * 11 4 3 13 13 C 1.39404 * 120.00546 * 359.71720 * 12 11 4 14 14 C 1.48373 * 120.10512 * 179.97438 * 13 12 11 15 15 C 1.39344 * 120.11971 * 129.74584 * 14 13 12 16 16 C 1.38020 * 119.87147 * 179.74195 * 15 14 13 17 17 C 1.38319 * 120.12583 * 0.55093 * 16 15 14 18 18 Si 1.86803 * 119.87978 * 179.71937 * 17 16 15 19 19 C 1.86298 * 109.47090 * 269.98166 * 18 17 16 20 20 C 1.86295 * 109.46814 * 29.98096 * 18 17 16 21 21 C 1.86294 * 109.46998 * 149.98042 * 18 17 16 22 22 C 1.38324 * 120.24101 * 359.70286 * 17 16 15 23 23 C 1.38017 * 120.12489 * 0.02562 * 22 17 16 24 24 C 1.38758 * 120.00310 * 89.99578 * 3 2 1 25 25 F 1.35103 * 120.11138 * 359.97438 * 24 3 2 26 26 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47187 * 300.00202 * 1 2 3 28 28 H 1.09001 * 109.46558 * 60.00250 * 1 2 3 29 29 H 1.08991 * 109.47400 * 45.00048 * 5 4 3 30 30 H 0.96704 * 114.00320 * 300.00788 * 6 5 4 31 31 H 1.07999 * 119.89007 * 180.27300 * 11 4 3 32 32 H 1.08000 * 119.99607 * 179.69661 * 12 11 4 33 33 H 1.07997 * 120.06144 * 359.97438 * 15 14 13 34 34 H 1.08008 * 119.93446 * 180.27350 * 16 15 14 35 35 H 1.09008 * 109.47360 * 59.99914 * 19 18 17 36 36 H 1.09003 * 109.47153 * 179.97438 * 19 18 17 37 37 H 1.08997 * 109.47328 * 300.00209 * 19 18 17 38 38 H 1.09000 * 109.47100 * 60.00313 * 20 18 17 39 39 H 1.09003 * 109.46884 * 180.02562 * 20 18 17 40 40 H 1.08994 * 109.47703 * 299.99973 * 20 18 17 41 41 H 1.09003 * 109.47244 * 60.00190 * 21 18 17 42 42 H 1.09003 * 109.46864 * 180.02562 * 21 18 17 43 43 H 1.09000 * 109.47495 * 300.00041 * 21 18 17 44 44 H 1.08007 * 119.93264 * 179.97438 * 22 17 16 45 45 H 1.07998 * 120.05866 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 2.3662 1.8267 -1.2010 5 6 2.0292 1.1501 -2.5047 6 8 2.9448 0.0774 -2.7353 7 14 2.1548 2.3835 -3.8952 8 1 3.5385 2.9189 -3.9585 9 1 1.8232 1.7166 -5.1799 10 1 1.2033 3.4982 -3.6555 11 6 2.9889 3.0617 -1.2061 12 6 3.3062 3.6845 -0.0163 13 6 2.9940 3.0717 1.1962 14 6 3.3347 3.7391 2.4769 15 6 2.3676 3.8821 3.4698 16 6 2.6915 4.4990 4.6612 17 6 3.9702 4.9850 4.8661 18 14 4.3990 5.8258 6.4781 19 6 4.0629 7.6526 6.3344 20 6 3.3596 5.1090 7.8479 21 6 6.2021 5.5543 6.8597 22 6 4.9327 4.8505 3.8817 23 6 4.6213 4.2303 2.6887 24 6 2.3612 1.8297 1.2016 25 9 2.0551 1.2302 2.3730 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 1.0136 0.7572 -2.4582 30 1 3.8698 0.3544 -2.7883 31 1 3.2317 3.5381 -2.1445 32 1 3.7968 4.6466 -0.0246 33 1 1.3675 3.5076 3.3088 34 1 1.9439 4.6064 5.4332 35 1 3.0078 7.8115 6.1111 36 1 4.3126 8.1431 7.2752 37 1 4.6709 8.0719 5.5329 38 1 3.5563 4.0402 7.9320 39 1 3.6094 5.5999 8.7885 40 1 2.3046 5.2678 7.6248 41 1 6.8103 5.9736 6.0582 42 1 6.4522 6.0445 7.8006 43 1 6.3988 4.4855 6.9438 44 1 5.9295 5.2322 4.0469 45 1 5.3737 4.1255 1.9211 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_15738144.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:22:00 Heat of formation + Delta-G solvation = -99.274706 kcal Electronic energy + Delta-G solvation = -26256.200751 eV Core-core repulsion = 22470.091616 eV Total energy + Delta-G solvation = -3786.109134 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.131 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.09917 -41.34977 -40.01695 -38.48404 -37.56655 -33.78772 -31.99610 -31.32723 -30.65315 -29.36638 -28.31039 -28.26554 -28.17701 -26.57535 -24.13167 -23.57923 -23.09804 -21.98446 -19.30011 -18.62444 -18.41390 -17.75649 -17.43225 -16.94925 -16.42500 -16.18054 -15.99374 -15.82492 -15.73673 -15.50566 -15.38318 -14.57506 -14.45312 -14.38273 -14.07603 -14.00728 -13.75316 -13.71244 -13.60061 -13.43465 -13.23937 -13.12706 -13.11162 -12.96597 -12.86413 -12.68807 -12.17431 -12.10944 -12.00458 -11.66686 -11.29156 -10.96114 -10.80396 -10.76166 -10.42343 -10.29537 -9.86672 -9.85044 -9.33458 -0.47658 -0.18147 0.39558 0.49524 1.09988 1.43732 1.53351 1.83061 1.90515 2.01352 2.02351 2.16929 2.52847 2.66352 2.87950 2.98924 3.31134 3.54985 3.59206 3.78677 3.91597 4.02085 4.07966 4.20913 4.24677 4.26320 4.47413 4.48494 4.59419 4.68701 4.70185 4.77754 4.84167 4.84795 4.88237 4.88835 4.89822 4.91756 4.91958 5.01995 5.03983 5.13789 5.29603 5.48820 5.52436 5.56408 5.59463 5.68131 5.70512 6.07880 6.26092 6.68428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.342 6.342 3 C 0.077 3.923 4 C -0.115 4.115 5 C -0.085 4.085 6 O -0.547 6.547 7 Si 0.990 3.010 8 H -0.231 1.231 9 H -0.273 1.273 10 H -0.249 1.249 11 C -0.114 4.114 12 C -0.074 4.074 13 C -0.067 4.067 14 C -0.064 4.064 15 C -0.127 4.127 16 C -0.099 4.099 17 C -0.375 4.375 18 Si 1.127 2.873 19 C -0.460 4.460 20 C -0.466 4.466 21 C -0.461 4.461 22 C -0.096 4.096 23 C -0.119 4.119 24 C 0.066 3.934 25 F -0.141 7.141 26 H 0.113 0.887 27 H 0.045 0.955 28 H 0.064 0.936 29 H 0.111 0.889 30 H 0.389 0.611 31 H 0.163 0.837 32 H 0.167 0.833 33 H 0.111 0.889 34 H 0.137 0.863 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.147 0.853 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.106 5.279 -0.923 5.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.259 6.259 3 C 0.032 3.968 4 C -0.116 4.116 5 C -0.194 4.194 6 O -0.354 6.354 7 Si 0.811 3.189 8 H -0.154 1.154 9 H -0.198 1.198 10 H -0.173 1.173 11 C -0.131 4.131 12 C -0.092 4.092 13 C -0.068 4.068 14 C -0.064 4.064 15 C -0.146 4.146 16 C -0.116 4.116 17 C -0.414 4.414 18 Si 1.314 2.686 19 C -0.567 4.567 20 C -0.573 4.573 21 C -0.568 4.568 22 C -0.114 4.114 23 C -0.137 4.137 24 C 0.046 3.954 25 F -0.119 7.119 26 H 0.131 0.869 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.129 0.871 30 H 0.238 0.762 31 H 0.180 0.820 32 H 0.184 0.816 33 H 0.129 0.871 34 H 0.155 0.845 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.164 0.836 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.651 5.274 -1.600 5.550 hybrid contribution -0.218 -0.625 0.666 0.939 sum 0.433 4.649 -0.934 4.761 Atomic orbital electron populations 1.23274 0.77066 1.05041 1.01346 1.86099 1.21627 1.23938 1.94247 1.18558 0.99939 0.87488 0.90801 1.20794 1.00460 0.95259 0.95115 1.25239 0.97159 0.97886 0.99078 1.86552 1.20899 1.33583 1.94396 0.85152 0.82399 0.76039 0.75340 1.15444 1.19781 1.17254 1.21339 0.98120 0.93672 1.00018 1.21405 0.97793 1.00761 0.89217 1.18992 1.00148 0.92490 0.95179 1.18719 0.95179 0.99930 0.92593 1.21389 0.98731 1.00035 0.94402 1.21283 0.97634 0.96475 0.96244 1.28106 0.95369 1.04090 1.13861 0.77172 0.65835 0.64728 0.60821 1.26252 1.05000 1.20592 1.04835 1.26326 1.09939 1.06962 1.14025 1.26258 1.19975 1.04887 1.05697 1.21391 1.00364 0.96986 0.92654 1.21509 0.94959 0.98314 0.98941 1.18427 1.03138 0.92926 0.80925 1.91465 1.91142 1.83260 1.46052 0.86913 0.93590 0.91746 0.87097 0.76223 0.81967 0.81578 0.87090 0.84532 0.91481 0.90626 0.91089 0.91568 0.90574 0.91105 0.90578 0.90601 0.91443 0.83559 0.84458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.06 10.90 113.37 1.24 1.30 16 2 O -0.34 -3.22 9.64 -93.14 -0.90 -4.12 16 3 C 0.08 0.59 5.70 22.50 0.13 0.71 16 4 C -0.12 -0.26 5.28 -19.74 -0.10 -0.37 16 5 C -0.09 -0.02 2.37 71.24 0.17 0.15 16 6 O -0.55 -1.42 12.88 -148.98 -1.92 -3.34 16 7 Si 0.99 -3.46 25.47 68.60 1.75 -1.71 16 8 H -0.23 1.41 6.73 99.48 0.67 2.08 16 9 H -0.27 -0.13 7.11 99.48 0.71 0.58 16 10 H -0.25 0.77 7.11 99.48 0.71 1.48 16 11 C -0.11 0.19 8.64 22.23 0.19 0.38 16 12 C -0.07 0.04 9.51 22.49 0.21 0.26 16 13 C -0.07 -0.34 5.48 -20.02 -0.11 -0.45 16 14 C -0.06 -0.35 5.31 -20.05 -0.11 -0.46 16 15 C -0.13 -0.76 8.87 22.48 0.20 -0.56 16 16 C -0.10 -0.26 9.28 22.24 0.21 -0.06 16 17 C -0.38 0.02 4.60 22.31 0.10 0.12 16 18 Si 1.13 -6.23 12.31 68.60 0.84 -5.39 16 19 C -0.46 1.85 8.65 113.37 0.98 2.83 16 20 C -0.47 1.53 8.52 113.37 0.97 2.50 16 21 C -0.46 2.08 8.52 113.37 0.97 3.05 16 22 C -0.10 -0.01 9.28 22.24 0.21 0.19 16 23 C -0.12 -0.27 9.51 22.48 0.21 -0.05 16 24 C 0.07 0.59 7.17 22.67 0.16 0.75 16 25 F -0.14 -1.79 15.76 44.97 0.71 -1.09 16 26 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 27 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 28 H 0.06 -0.07 7.12 -2.39 -0.02 -0.09 16 29 H 0.11 0.01 6.56 -2.39 -0.02 -0.01 16 30 H 0.39 -1.86 8.70 -74.05 -0.64 -2.51 16 31 H 0.16 -1.15 4.86 -2.91 -0.01 -1.17 16 32 H 0.17 -0.97 8.04 -2.91 -0.02 -1.00 16 33 H 0.11 0.69 7.81 -2.91 -0.02 0.67 16 34 H 0.14 -0.17 7.40 -2.91 -0.02 -0.19 16 35 H 0.07 -0.21 7.96 -2.38 -0.02 -0.23 16 36 H 0.07 -0.35 7.96 -2.39 -0.02 -0.36 16 37 H 0.07 -0.28 7.96 -2.39 -0.02 -0.29 16 38 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 39 H 0.08 -0.30 7.96 -2.39 -0.02 -0.32 16 40 H 0.07 -0.24 7.67 -2.39 -0.02 -0.26 16 41 H 0.08 -0.42 7.67 -2.39 -0.02 -0.44 16 42 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 43 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 44 H 0.15 -0.73 7.40 -2.91 -0.02 -0.75 16 45 H 0.14 -0.23 8.04 -2.91 -0.02 -0.26 16 Total: 0.00 -16.37 377.88 7.18 -9.19 By element: Atomic # 1 Polarization: -4.92 SS G_CDS: 1.07 Total: -3.85 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 5.62 Total: 10.30 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -2.82 Total: -7.47 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.71 Total: -1.09 kcal Atomic # 14 Polarization: -9.69 SS G_CDS: 2.59 Total: -7.10 kcal Total: -16.37 7.18 -9.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_15738144.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.081 kcal (2) G-P(sol) polarization free energy of solvation -16.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds