Wall clock time and date at job start Mon Mar 8 2021 09:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86295 * 109.47082 * 2 1 4 4 C 1.86301 * 109.46982 * 240.00090 * 2 1 3 5 5 C 1.86793 * 109.47219 * 120.00473 * 2 1 3 6 6 C 1.38340 * 119.87252 * 89.99883 * 5 2 1 7 7 C 1.37985 * 120.13880 * 179.97438 * 6 5 2 8 8 C 1.39455 * 119.86496 * 359.97438 * 7 6 5 9 9 C 1.48137 * 120.13649 * 179.97438 * 8 7 6 10 10 C 1.41511 * 120.35142 * 129.71943 * 9 8 7 11 11 C 1.40244 * 121.25490 * 359.97438 * 10 9 8 12 12 C 1.36207 * 119.67804 * 180.02562 * 11 10 9 13 13 C 1.39328 * 120.94437 * 0.02562 * 12 11 10 14 14 C 1.36115 * 120.96350 * 359.52048 * 13 12 11 15 15 C 1.40585 * 119.65573 * 0.70908 * 14 13 12 16 16 C 1.40533 * 121.18344 * 179.26706 * 15 14 13 17 17 C 1.36221 * 120.06249 * 180.02562 * 16 15 14 18 18 C 1.50695 * 119.42884 * 179.97438 * 17 16 15 19 19 O 1.42894 * 109.47307 * 120.02335 * 18 17 16 20 20 Si 1.86299 * 109.46947 * 0.02562 * 18 17 16 21 21 H 1.48510 * 109.47056 * 60.00529 * 20 18 17 22 22 H 1.48507 * 109.47111 * 179.97438 * 20 18 17 23 23 H 1.48489 * 109.47558 * 300.00459 * 20 18 17 24 24 C 1.38370 * 120.34993 * 310.00319 * 9 8 7 25 25 C 1.39471 * 119.73310 * 359.97438 * 8 7 6 26 26 C 1.37978 * 119.86612 * 0.02562 * 25 8 7 27 27 H 1.08995 * 109.46871 * 299.99747 * 1 2 3 28 28 H 1.09000 * 109.47118 * 59.99860 * 1 2 3 29 29 H 1.09003 * 109.46743 * 179.97438 * 1 2 3 30 30 H 1.09010 * 109.47015 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47258 * 300.00054 * 3 2 1 32 32 H 1.09003 * 109.47356 * 60.00374 * 3 2 1 33 33 H 1.09000 * 109.47686 * 300.00099 * 4 2 1 34 34 H 1.09000 * 109.47154 * 60.00071 * 4 2 1 35 35 H 1.08997 * 109.47216 * 179.97438 * 4 2 1 36 36 H 1.08008 * 119.92626 * 0.25707 * 6 5 2 37 37 H 1.07996 * 120.06485 * 179.97438 * 7 6 5 38 38 H 1.07999 * 120.16442 * 0.02562 * 11 10 9 39 39 H 1.08003 * 119.52532 * 179.97438 * 12 11 10 40 40 H 1.08002 * 119.51283 * 179.97438 * 13 12 11 41 41 H 1.07994 * 120.17280 * 180.02562 * 14 13 12 42 42 H 1.08002 * 119.96798 * 0.03314 * 16 15 14 43 43 H 1.08996 * 109.46983 * 240.02477 * 18 17 16 44 44 H 0.96701 * 114.00148 * 299.99772 * 19 18 17 45 45 H 1.08001 * 119.65505 * 359.97438 * 24 9 8 46 46 H 1.08002 * 120.06686 * 179.97438 * 25 8 7 47 47 H 1.08002 * 119.93596 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4857 -0.8807 1.5251 6 6 2.7153 -2.2444 1.4878 7 6 3.1758 -2.9004 2.6110 8 6 3.4102 -2.1858 3.7853 9 6 3.9040 -2.8841 4.9949 10 6 5.0286 -2.3894 5.6971 11 6 5.7020 -1.2350 5.2719 12 6 6.7813 -0.7874 5.9718 13 6 7.2287 -1.4607 7.1066 14 6 6.5939 -2.5789 7.5532 15 6 5.4793 -3.0726 6.8530 16 6 4.8093 -4.2330 7.2767 17 6 3.7319 -4.6915 6.5806 18 6 3.0244 -5.9375 7.0474 19 8 1.6617 -5.6280 7.3458 20 14 3.8622 -6.5909 8.5777 21 1 3.8109 -5.5623 9.6477 22 1 3.1647 -7.8185 9.0381 23 1 5.2784 -6.9124 8.2678 24 6 3.2741 -4.0303 5.4466 25 6 3.1778 -0.8109 3.8165 26 6 2.7174 -0.1661 2.6869 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.5741 1.7564 -0.0005 31 1 2.1206 2.2703 -0.8900 32 1 2.1207 2.2703 0.8900 33 1 2.1207 -1.9059 -1.5213 34 1 2.1206 -0.3644 -2.4111 35 1 3.5739 -0.8778 -1.5214 36 1 2.5382 -2.7959 0.5762 37 1 3.3543 -3.9651 2.5806 38 1 5.3663 -0.7034 4.3937 39 1 7.2983 0.1016 5.6419 40 1 8.0872 -1.0857 7.6439 41 1 6.9514 -3.0905 8.4346 42 1 5.1488 -4.7616 8.1552 43 1 3.0620 -6.6924 6.2621 44 1 1.5521 -4.9615 8.0378 45 1 2.4178 -4.4152 4.9127 46 1 3.3572 -0.2522 4.7233 47 1 2.5366 0.8985 2.7099 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_15738306.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:23:58 Heat of formation + Delta-G solvation = -14.991529 kcal Electronic energy + Delta-G solvation = -25703.134349 eV Core-core repulsion = 22324.137754 eV Total energy + Delta-G solvation = -3378.996595 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 336.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.69630 -39.69158 -38.67744 -36.70583 -34.59334 -32.03417 -31.78470 -31.21743 -29.86833 -29.34236 -28.44137 -28.40764 -26.80822 -24.70708 -23.67339 -23.47811 -22.71910 -21.44072 -18.81045 -18.36141 -17.77035 -17.39273 -16.87991 -16.24372 -16.05433 -15.84210 -15.56279 -15.34898 -14.86209 -14.76376 -14.48233 -14.44159 -14.23478 -14.14570 -14.09154 -13.95371 -13.83312 -13.46279 -13.34001 -13.26360 -13.21244 -13.10355 -12.93045 -12.61419 -12.27694 -12.21959 -12.06280 -11.91980 -11.80817 -11.57750 -11.12830 -10.90675 -10.85765 -10.81957 -10.44832 -9.76857 -9.64983 -9.53338 -8.65483 -0.62602 0.01983 0.29632 0.56986 1.08369 1.11600 1.39717 1.47301 1.71997 1.85142 1.87350 1.90947 2.01445 2.55033 2.91216 3.12789 3.40065 3.47783 3.60291 3.82059 3.94505 4.03040 4.07341 4.10868 4.15461 4.34316 4.37766 4.44456 4.51909 4.54733 4.65763 4.69905 4.71144 4.72829 4.75089 4.75296 4.76488 4.77591 4.92188 4.97901 5.05354 5.16801 5.18674 5.27684 5.35256 5.43071 5.49112 5.51418 5.54290 5.56921 5.57871 5.64696 5.72650 5.83778 6.01518 6.13590 6.51602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.059 2.941 3 C -0.449 4.449 4 C -0.450 4.450 5 C -0.367 4.367 6 C -0.086 4.086 7 C -0.114 4.114 8 C -0.038 4.038 9 C -0.034 4.034 10 C -0.035 4.035 11 C -0.109 4.109 12 C -0.114 4.114 13 C -0.113 4.113 14 C -0.108 4.108 15 C -0.045 4.045 16 C -0.111 4.111 17 C -0.109 4.109 18 C -0.081 4.081 19 O -0.537 6.537 20 Si 0.947 3.053 21 H -0.250 1.250 22 H -0.252 1.252 23 H -0.250 1.250 24 C -0.079 4.079 25 C -0.118 4.118 26 C -0.088 4.088 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.133 0.867 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.124 0.876 43 H 0.120 0.880 44 H 0.377 0.623 45 H 0.132 0.868 46 H 0.122 0.878 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.764 1.483 -0.556 1.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.250 2.750 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.409 4.409 6 C -0.104 4.104 7 C -0.132 4.132 8 C -0.038 4.038 9 C -0.034 4.034 10 C -0.035 4.035 11 C -0.127 4.127 12 C -0.132 4.132 13 C -0.131 4.131 14 C -0.126 4.126 15 C -0.045 4.045 16 C -0.128 4.128 17 C -0.109 4.109 18 C -0.192 4.192 19 O -0.342 6.342 20 Si 0.769 3.231 21 H -0.174 1.174 22 H -0.176 1.176 23 H -0.173 1.173 24 C -0.097 4.097 25 C -0.136 4.136 26 C -0.106 4.106 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.151 0.849 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.137 0.863 44 H 0.224 0.776 45 H 0.149 0.851 46 H 0.140 0.860 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.083 0.681 -0.218 1.298 hybrid contribution 0.087 0.485 0.221 0.540 sum 1.170 1.166 0.003 1.652 Atomic orbital electron populations 1.26126 1.20485 1.04591 1.04467 0.78186 0.66886 0.66111 0.63776 1.26137 1.06441 1.18584 1.04555 1.26138 1.06448 1.08064 1.15085 1.27435 1.03793 0.99471 1.10201 1.21018 0.97107 0.94614 0.97673 1.21314 0.99707 0.99688 0.92531 1.18691 0.99278 0.93358 0.92427 1.18866 0.94831 0.95184 0.94525 1.17970 0.95307 0.95670 0.94550 1.21228 0.95687 0.95550 1.00212 1.20956 0.96632 1.00075 0.95492 1.20916 0.99903 0.95600 0.96643 1.21063 0.94933 0.96918 0.99677 1.17892 0.96320 0.95259 0.95057 1.20923 0.96046 0.96113 0.99757 1.19915 0.96602 0.97949 0.96460 1.25041 0.87181 0.97409 1.09581 1.86516 1.22864 1.63583 1.61218 0.85718 0.79573 0.80883 0.76894 1.17372 1.17616 1.17338 1.20981 0.99358 0.93875 0.95475 1.21351 1.00007 0.93435 0.98823 1.21017 0.97255 0.99694 0.92599 0.91170 0.91072 0.91157 0.91068 0.90972 0.91174 0.91165 0.90978 0.91070 0.85943 0.86091 0.84930 0.85721 0.85679 0.85381 0.85808 0.86260 0.77594 0.85056 0.86032 0.85953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.60 8.65 101.05 0.87 1.47 16 2 Si 1.06 -2.57 12.31 -169.99 -2.09 -4.66 16 3 C -0.45 0.81 8.52 101.05 0.86 1.67 16 4 C -0.45 0.77 8.52 101.05 0.86 1.63 16 5 C -0.37 0.04 4.60 -39.50 -0.18 -0.14 16 6 C -0.09 -0.04 9.28 -39.64 -0.37 -0.41 16 7 C -0.11 -0.17 9.51 -39.22 -0.37 -0.54 16 8 C -0.04 -0.08 5.04 -104.92 -0.53 -0.61 16 9 C -0.03 -0.09 5.50 -104.54 -0.57 -0.66 16 10 C -0.03 -0.10 5.74 -106.60 -0.61 -0.71 16 11 C -0.11 -0.20 8.60 -39.56 -0.34 -0.54 16 12 C -0.11 -0.10 9.95 -39.91 -0.40 -0.49 16 13 C -0.11 -0.07 9.95 -39.94 -0.40 -0.47 16 14 C -0.11 -0.13 9.77 -39.46 -0.39 -0.51 16 15 C -0.05 -0.11 5.74 -106.85 -0.61 -0.72 16 16 C -0.11 -0.16 8.37 -39.44 -0.33 -0.49 16 17 C -0.11 -0.13 5.37 -105.06 -0.56 -0.69 16 18 C -0.08 0.01 2.81 36.00 0.10 0.11 16 19 O -0.54 -0.32 12.76 -35.23 -0.45 -0.77 16 20 Si 0.95 -0.36 25.02 -169.99 -4.25 -4.61 16 21 H -0.25 0.06 7.11 56.52 0.40 0.46 16 22 H -0.25 -0.25 7.11 56.52 0.40 0.15 16 23 H -0.25 -0.03 7.11 56.52 0.40 0.37 16 24 C -0.08 -0.15 9.01 -39.24 -0.35 -0.50 16 25 C -0.12 -0.17 7.61 -39.22 -0.30 -0.46 16 26 C -0.09 -0.03 9.28 -39.63 -0.37 -0.40 16 27 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 28 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 29 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 30 H 0.07 -0.11 7.96 -51.92 -0.41 -0.52 16 31 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 32 H 0.07 -0.14 7.67 -51.93 -0.40 -0.53 16 33 H 0.07 -0.13 7.67 -51.93 -0.40 -0.53 16 34 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 35 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 36 H 0.12 -0.17 7.39 -52.48 -0.39 -0.56 16 37 H 0.12 0.06 8.04 -52.49 -0.42 -0.36 16 38 H 0.13 0.14 5.61 -52.49 -0.29 -0.15 16 39 H 0.12 -0.14 8.06 -52.48 -0.42 -0.56 16 40 H 0.13 -0.18 8.06 -52.49 -0.42 -0.60 16 41 H 0.13 -0.11 8.06 -52.49 -0.42 -0.53 16 42 H 0.12 -0.01 4.74 -52.49 -0.25 -0.26 16 43 H 0.12 -0.12 7.96 -51.93 -0.41 -0.53 16 44 H 0.38 -0.92 8.70 45.56 0.40 -0.52 16 45 H 0.13 0.18 8.03 -52.49 -0.42 -0.24 16 46 H 0.12 0.09 7.29 -52.49 -0.38 -0.29 16 47 H 0.12 -0.19 7.40 -52.49 -0.39 -0.58 16 LS Contribution 383.60 15.07 5.78 5.78 Total: 0.00 -5.32 383.60 -11.32 -16.64 By element: Atomic # 1 Polarization: -2.58 SS G_CDS: -6.32 Total: -8.90 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -3.99 Total: -3.48 kcal Atomic # 8 Polarization: -0.32 SS G_CDS: -0.45 Total: -0.77 kcal Atomic # 14 Polarization: -2.93 SS G_CDS: -6.35 Total: -9.27 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -5.32 -11.32 -16.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_15738306.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.649 kcal (2) G-P(sol) polarization free energy of solvation -5.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds