Wall clock time and date at job start Mon Mar 8 2021 09:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86295 * 109.47082 * 2 1 4 4 C 1.86301 * 109.46982 * 240.00090 * 2 1 3 5 5 C 1.86793 * 109.47219 * 120.00473 * 2 1 3 6 6 C 1.38340 * 119.87252 * 89.99883 * 5 2 1 7 7 C 1.37985 * 120.13880 * 179.97438 * 6 5 2 8 8 C 1.39455 * 119.86496 * 359.97438 * 7 6 5 9 9 C 1.48137 * 120.13649 * 179.97438 * 8 7 6 10 10 C 1.41511 * 120.35142 * 129.71943 * 9 8 7 11 11 C 1.40244 * 121.25490 * 359.97438 * 10 9 8 12 12 C 1.36207 * 119.67804 * 180.02562 * 11 10 9 13 13 C 1.39328 * 120.94437 * 0.02562 * 12 11 10 14 14 C 1.36115 * 120.96350 * 359.52048 * 13 12 11 15 15 C 1.40585 * 119.65573 * 0.70908 * 14 13 12 16 16 C 1.40533 * 121.18344 * 179.26706 * 15 14 13 17 17 C 1.36221 * 120.06249 * 180.02562 * 16 15 14 18 18 C 1.50695 * 119.42884 * 179.97438 * 17 16 15 19 19 O 1.42894 * 109.47307 * 120.02335 * 18 17 16 20 20 Si 1.86299 * 109.46947 * 0.02562 * 18 17 16 21 21 H 1.48510 * 109.47056 * 60.00529 * 20 18 17 22 22 H 1.48507 * 109.47111 * 179.97438 * 20 18 17 23 23 H 1.48489 * 109.47558 * 300.00459 * 20 18 17 24 24 C 1.38370 * 120.34993 * 310.00319 * 9 8 7 25 25 C 1.39471 * 119.73310 * 359.97438 * 8 7 6 26 26 C 1.37978 * 119.86612 * 0.02562 * 25 8 7 27 27 H 1.08995 * 109.46871 * 299.99747 * 1 2 3 28 28 H 1.09000 * 109.47118 * 59.99860 * 1 2 3 29 29 H 1.09003 * 109.46743 * 179.97438 * 1 2 3 30 30 H 1.09010 * 109.47015 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47258 * 300.00054 * 3 2 1 32 32 H 1.09003 * 109.47356 * 60.00374 * 3 2 1 33 33 H 1.09000 * 109.47686 * 300.00099 * 4 2 1 34 34 H 1.09000 * 109.47154 * 60.00071 * 4 2 1 35 35 H 1.08997 * 109.47216 * 179.97438 * 4 2 1 36 36 H 1.08008 * 119.92626 * 0.25707 * 6 5 2 37 37 H 1.07996 * 120.06485 * 179.97438 * 7 6 5 38 38 H 1.07999 * 120.16442 * 0.02562 * 11 10 9 39 39 H 1.08003 * 119.52532 * 179.97438 * 12 11 10 40 40 H 1.08002 * 119.51283 * 179.97438 * 13 12 11 41 41 H 1.07994 * 120.17280 * 180.02562 * 14 13 12 42 42 H 1.08002 * 119.96798 * 0.03314 * 16 15 14 43 43 H 1.08996 * 109.46983 * 240.02477 * 18 17 16 44 44 H 0.96701 * 114.00148 * 299.99772 * 19 18 17 45 45 H 1.08001 * 119.65505 * 359.97438 * 24 9 8 46 46 H 1.08002 * 120.06686 * 179.97438 * 25 8 7 47 47 H 1.08002 * 119.93596 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4857 -0.8807 1.5251 6 6 2.7153 -2.2444 1.4878 7 6 3.1758 -2.9004 2.6110 8 6 3.4102 -2.1858 3.7853 9 6 3.9040 -2.8841 4.9949 10 6 5.0286 -2.3894 5.6971 11 6 5.7020 -1.2350 5.2719 12 6 6.7813 -0.7874 5.9718 13 6 7.2287 -1.4607 7.1066 14 6 6.5939 -2.5789 7.5532 15 6 5.4793 -3.0726 6.8530 16 6 4.8093 -4.2330 7.2767 17 6 3.7319 -4.6915 6.5806 18 6 3.0244 -5.9375 7.0474 19 8 1.6617 -5.6280 7.3458 20 14 3.8622 -6.5909 8.5777 21 1 3.8109 -5.5623 9.6477 22 1 3.1647 -7.8185 9.0381 23 1 5.2784 -6.9124 8.2678 24 6 3.2741 -4.0303 5.4466 25 6 3.1778 -0.8109 3.8165 26 6 2.7174 -0.1661 2.6869 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.5741 1.7564 -0.0005 31 1 2.1206 2.2703 -0.8900 32 1 2.1207 2.2703 0.8900 33 1 2.1207 -1.9059 -1.5213 34 1 2.1206 -0.3644 -2.4111 35 1 3.5739 -0.8778 -1.5214 36 1 2.5382 -2.7959 0.5762 37 1 3.3543 -3.9651 2.5806 38 1 5.3663 -0.7034 4.3937 39 1 7.2983 0.1016 5.6419 40 1 8.0872 -1.0857 7.6439 41 1 6.9514 -3.0905 8.4346 42 1 5.1488 -4.7616 8.1552 43 1 3.0620 -6.6924 6.2621 44 1 1.5521 -4.9615 8.0378 45 1 2.4178 -4.4152 4.9127 46 1 3.3572 -0.2522 4.7233 47 1 2.5366 0.8985 2.7099 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_15738306.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:23:57 Heat of formation + Delta-G solvation = -2.665509 kcal Electronic energy + Delta-G solvation = -25702.599853 eV Core-core repulsion = 22324.137754 eV Total energy + Delta-G solvation = -3378.462099 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 336.141 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.75903 -39.71806 -38.70947 -36.74359 -34.64645 -32.06467 -31.83956 -31.25313 -29.86572 -29.25395 -28.28112 -28.26339 -26.83717 -24.77311 -23.71864 -23.52112 -22.76369 -21.49330 -18.84088 -18.41738 -17.79649 -17.43014 -16.91630 -16.25557 -16.07539 -15.87612 -15.58364 -15.39505 -14.88701 -14.80109 -14.54169 -14.43786 -14.22075 -14.06370 -14.02660 -13.89404 -13.72225 -13.42792 -13.33319 -13.11837 -13.10182 -12.96231 -12.91686 -12.63448 -12.31744 -12.21451 -12.10281 -11.93888 -11.83921 -11.61392 -11.12699 -10.81920 -10.77957 -10.74919 -10.45952 -9.81835 -9.68323 -9.61623 -8.72908 -0.70177 -0.07117 0.25669 0.52081 1.01124 1.12242 1.42000 1.47905 1.85287 1.86077 1.89188 2.03834 2.11968 2.67684 2.87970 3.05084 3.39706 3.43949 3.60264 3.76317 3.89031 3.99976 4.05573 4.08581 4.13084 4.29929 4.34116 4.42311 4.51426 4.55776 4.65226 4.69051 4.84789 4.85319 4.85721 4.89103 4.89907 4.90814 4.91603 4.93814 5.00659 5.11736 5.16396 5.21526 5.28480 5.44463 5.50169 5.51925 5.58677 5.59842 5.65740 5.68394 5.71689 5.76905 5.96856 6.11864 6.64097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.127 2.873 3 C -0.461 4.461 4 C -0.462 4.462 5 C -0.378 4.378 6 C -0.095 4.095 7 C -0.129 4.129 8 C -0.052 4.052 9 C -0.044 4.044 10 C -0.053 4.053 11 C -0.122 4.122 12 C -0.117 4.117 13 C -0.117 4.117 14 C -0.117 4.117 15 C -0.063 4.063 16 C -0.117 4.117 17 C -0.110 4.110 18 C -0.082 4.082 19 O -0.551 6.551 20 Si 0.981 3.019 21 H -0.250 1.250 22 H -0.272 1.272 23 H -0.254 1.254 24 C -0.088 4.088 25 C -0.129 4.129 26 C -0.096 4.096 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.140 0.860 37 H 0.123 0.877 38 H 0.134 0.866 39 H 0.143 0.857 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.138 0.862 43 H 0.126 0.874 44 H 0.389 0.611 45 H 0.131 0.869 46 H 0.122 0.878 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.113 2.065 -0.689 2.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.314 2.686 3 C -0.568 4.568 4 C -0.569 4.569 5 C -0.417 4.417 6 C -0.113 4.113 7 C -0.147 4.147 8 C -0.052 4.052 9 C -0.044 4.044 10 C -0.053 4.053 11 C -0.140 4.140 12 C -0.134 4.134 13 C -0.134 4.134 14 C -0.135 4.135 15 C -0.063 4.063 16 C -0.135 4.135 17 C -0.111 4.111 18 C -0.192 4.192 19 O -0.358 6.358 20 Si 0.804 3.196 21 H -0.173 1.173 22 H -0.197 1.197 23 H -0.179 1.179 24 C -0.106 4.106 25 C -0.147 4.147 26 C -0.113 4.113 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.158 0.842 37 H 0.141 0.859 38 H 0.152 0.848 39 H 0.161 0.839 40 H 0.165 0.835 41 H 0.165 0.835 42 H 0.155 0.845 43 H 0.143 0.857 44 H 0.238 0.762 45 H 0.149 0.851 46 H 0.140 0.860 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.431 1.268 -0.338 1.942 hybrid contribution -0.028 0.323 0.253 0.411 sum 1.403 1.591 -0.085 2.123 Atomic orbital electron populations 1.26300 1.21746 1.04411 1.04535 0.77170 0.65111 0.64730 0.61620 1.26264 1.06454 1.19233 1.04884 1.26280 1.06415 1.08466 1.15776 1.28045 1.02993 0.99467 1.11191 1.21318 0.96819 0.95191 0.97988 1.21483 1.00304 1.00026 0.92925 1.18805 0.99969 0.93812 0.92598 1.19020 0.95030 0.95482 0.94847 1.18184 0.95721 0.96312 0.95074 1.21332 0.96318 0.95668 1.00693 1.21251 0.96230 1.00579 0.95388 1.21229 1.00376 0.95299 0.96538 1.21358 0.94598 0.97298 1.00244 1.18168 0.97065 0.95756 0.95316 1.21106 0.96072 0.96068 1.00230 1.20041 0.96627 0.98258 0.96148 1.25135 0.86875 0.96936 1.10215 1.86482 1.23240 1.64148 1.61921 0.85235 0.78601 0.79602 0.76122 1.17328 1.19669 1.17860 1.21067 0.99515 0.94068 0.95945 1.21461 1.00471 0.93350 0.99374 1.21323 0.96867 1.00731 0.92417 0.91454 0.90667 0.91486 0.91208 0.90653 0.90889 0.90973 0.90650 0.91285 0.84248 0.85886 0.84833 0.83881 0.83466 0.83523 0.84452 0.85669 0.76248 0.85135 0.86047 0.84134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.41 8.65 113.37 0.98 2.39 16 2 Si 1.13 -6.09 12.31 68.60 0.84 -5.25 16 3 C -0.46 2.00 8.52 113.37 0.97 2.97 16 4 C -0.46 1.85 8.52 113.37 0.97 2.82 16 5 C -0.38 0.03 4.60 22.32 0.10 0.13 16 6 C -0.10 -0.15 9.28 22.23 0.21 0.06 16 7 C -0.13 -0.58 9.51 22.50 0.21 -0.37 16 8 C -0.05 -0.31 5.04 -20.06 -0.10 -0.41 16 9 C -0.04 -0.30 5.50 -19.81 -0.11 -0.41 16 10 C -0.05 -0.37 5.74 -21.15 -0.12 -0.49 16 11 C -0.12 -0.59 8.60 22.28 0.19 -0.40 16 12 C -0.12 -0.21 9.95 22.06 0.22 0.01 16 13 C -0.12 -0.09 9.95 22.04 0.22 0.12 16 14 C -0.12 -0.27 9.77 22.35 0.22 -0.05 16 15 C -0.06 -0.36 5.74 -21.31 -0.12 -0.48 16 16 C -0.12 -0.42 8.37 22.36 0.19 -0.23 16 17 C -0.11 -0.38 5.37 -20.15 -0.11 -0.49 16 18 C -0.08 -0.03 2.81 71.23 0.20 0.17 16 19 O -0.55 -0.98 12.76 -148.98 -1.90 -2.88 16 20 Si 0.98 -0.63 25.02 68.60 1.72 1.09 16 21 H -0.25 0.21 7.11 99.48 0.71 0.91 16 22 H -0.27 -0.68 7.11 99.48 0.71 0.03 16 23 H -0.25 -0.02 7.11 99.48 0.71 0.68 16 24 C -0.09 -0.49 9.01 22.49 0.20 -0.28 16 25 C -0.13 -0.53 7.61 22.51 0.17 -0.36 16 26 C -0.10 -0.12 9.28 22.24 0.21 0.09 16 27 H 0.07 -0.16 7.96 -2.39 -0.02 -0.17 16 28 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 29 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 30 H 0.07 -0.26 7.96 -2.38 -0.02 -0.28 16 31 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 32 H 0.07 -0.34 7.67 -2.39 -0.02 -0.36 16 33 H 0.07 -0.31 7.67 -2.39 -0.02 -0.32 16 34 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 35 H 0.07 -0.23 7.96 -2.39 -0.02 -0.24 16 36 H 0.14 -0.38 7.39 -2.91 -0.02 -0.40 16 37 H 0.12 0.35 8.04 -2.91 -0.02 0.33 16 38 H 0.13 0.49 5.61 -2.91 -0.02 0.47 16 39 H 0.14 -0.39 8.06 -2.91 -0.02 -0.41 16 40 H 0.15 -0.62 8.06 -2.91 -0.02 -0.65 16 41 H 0.15 -0.36 8.06 -2.91 -0.02 -0.38 16 42 H 0.14 -0.02 4.74 -2.91 -0.01 -0.04 16 43 H 0.13 -0.16 7.96 -2.39 -0.02 -0.18 16 44 H 0.39 -1.67 8.70 -74.06 -0.64 -2.31 16 45 H 0.13 0.62 8.03 -2.91 -0.02 0.59 16 46 H 0.12 0.39 7.29 -2.91 -0.02 0.37 16 47 H 0.14 -0.46 7.40 -2.91 -0.02 -0.48 16 Total: 0.00 -12.71 383.60 6.43 -6.28 By element: Atomic # 1 Polarization: -5.10 SS G_CDS: 1.08 Total: -4.03 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 4.69 Total: 4.79 kcal Atomic # 8 Polarization: -0.98 SS G_CDS: -1.90 Total: -2.88 kcal Atomic # 14 Polarization: -6.72 SS G_CDS: 2.56 Total: -4.16 kcal Total: -12.71 6.43 -6.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_15738306.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.617 kcal (2) G-P(sol) polarization free energy of solvation -12.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds