Wall clock time and date at job start Mon Mar 8 2021 09:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86294 * 109.47107 * 2 1 4 4 C 1.86294 * 109.46873 * 239.99780 * 2 1 3 5 5 C 1.86800 * 109.46954 * 120.00211 * 2 1 3 6 6 C 1.38317 * 119.88564 * 90.00128 * 5 2 1 7 7 C 1.38020 * 120.12176 * 180.02562 * 6 5 2 8 8 C 1.39303 * 119.87870 * 359.97134 * 7 6 5 9 9 C 1.48479 * 120.11809 * 179.97438 * 8 7 6 10 10 C 1.36430 * 126.22833 * 180.02562 * 9 8 7 11 11 N 1.34827 * 107.61371 * 180.02562 * 10 9 8 12 12 C 1.46499 * 125.89459 * 179.97438 * 11 10 9 13 13 C 1.50693 * 109.47329 * 124.99954 * 12 11 10 14 14 C 1.38233 * 120.00207 * 89.99403 * 13 12 11 15 15 C 1.38234 * 120.00037 * 179.72405 * 14 13 12 16 16 C 1.38234 * 120.00240 * 0.26327 * 15 14 13 17 17 C 1.50701 * 120.00243 * 180.02562 * 16 15 14 18 18 O 1.42901 * 109.46864 * 65.00281 * 17 16 15 19 19 Si 1.86301 * 109.47201 * 184.99846 * 17 16 15 20 20 H 1.48501 * 109.47024 * 59.99906 * 19 17 16 21 21 H 1.48499 * 109.47052 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47162 * 300.00395 * 19 17 16 23 23 C 1.38238 * 119.99693 * 359.97438 * 16 15 14 24 24 C 1.38234 * 120.00082 * 0.02562 * 23 16 15 25 25 N 1.40016 * 108.20813 * 0.22829 * 11 10 9 26 26 C 1.30672 * 108.52518 * 359.60996 * 25 11 10 27 27 C 1.39298 * 119.76888 * 0.25869 * 8 7 6 28 28 C 1.38035 * 119.87674 * 359.49054 * 27 8 7 29 29 H 1.09006 * 109.47427 * 299.99560 * 1 2 3 30 30 H 1.08996 * 109.47396 * 60.00061 * 1 2 3 31 31 H 1.09004 * 109.47288 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47093 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47293 * 300.00192 * 3 2 1 34 34 H 1.08999 * 109.47249 * 60.00059 * 3 2 1 35 35 H 1.08996 * 109.47862 * 300.00042 * 4 2 1 36 36 H 1.09002 * 109.47263 * 60.00541 * 4 2 1 37 37 H 1.09001 * 109.47365 * 179.97438 * 4 2 1 38 38 H 1.08009 * 119.93780 * 359.97438 * 6 5 2 39 39 H 1.08004 * 120.06282 * 180.02562 * 7 6 5 40 40 H 1.08003 * 126.19045 * 0.06099 * 10 9 8 41 41 H 1.09000 * 109.46981 * 4.99943 * 12 11 10 42 42 H 1.09001 * 109.46676 * 244.99757 * 12 11 10 43 43 H 1.08002 * 120.00157 * 0.02562 * 14 13 12 44 44 H 1.07999 * 120.00009 * 180.28389 * 15 14 13 45 45 H 1.08991 * 109.47143 * 304.99866 * 17 16 15 46 46 H 0.96698 * 114.00406 * 59.99991 * 18 17 16 47 47 H 1.08001 * 119.99643 * 179.97438 * 23 16 15 48 48 H 1.07999 * 120.00025 * 179.97438 * 24 23 16 49 49 H 1.08001 * 125.94670 * 180.11163 * 26 25 11 50 50 H 1.08000 * 120.06055 * 179.74999 * 27 8 7 51 51 H 1.08000 * 119.93538 * 180.23399 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5211 5 6 2.4856 -0.8807 1.5252 6 6 2.7154 -2.2441 1.4883 7 6 3.1749 -2.8998 2.6125 8 6 3.4079 -2.1858 3.7857 9 6 3.9017 -2.8859 4.9984 10 6 4.1699 -2.3129 6.2071 11 7 4.5953 -3.2880 7.0354 12 6 4.9927 -3.1137 8.4346 13 6 4.1891 -4.0453 9.3049 14 6 4.6574 -5.3182 9.5716 15 6 3.9229 -6.1707 10.3745 16 6 2.7176 -5.7522 10.9063 17 6 1.9172 -6.6813 11.7822 18 8 2.6454 -6.9503 12.9819 19 14 0.2891 -5.8830 12.2099 20 1 -0.4677 -5.6034 10.9631 21 1 -0.4993 -6.7984 13.0734 22 1 0.5369 -4.6106 12.9343 23 6 2.2469 -4.4809 10.6356 24 6 2.9814 -3.6284 9.8327 25 7 4.5974 -4.4950 6.3256 26 6 4.1790 -4.2623 5.1097 27 6 3.1703 -0.8136 3.8189 28 6 2.7157 -0.1668 2.6874 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 3.5739 1.7564 0.0005 33 1 2.1206 2.2703 -0.8900 34 1 2.1207 2.2702 0.8900 35 1 2.1206 -1.9059 -1.5211 36 1 2.1206 -0.3644 -2.4111 37 1 3.5739 -0.8779 -1.5214 38 1 2.5340 -2.7968 0.5782 39 1 3.3543 -3.9644 2.5824 40 1 4.0605 -1.2676 6.4557 41 1 4.8090 -2.0833 8.7388 42 1 6.0534 -3.3408 8.5420 43 1 5.5994 -5.6451 9.1566 44 1 4.2910 -7.1637 10.5866 45 1 1.7353 -7.6152 11.2504 46 1 2.8430 -6.1628 13.5071 47 1 1.3050 -4.1540 11.0508 48 1 2.6135 -2.6353 9.6208 49 1 4.0695 -4.9967 4.3255 50 1 3.3455 -0.2561 4.7272 51 1 2.5348 0.8976 2.7110 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_15738430.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:24:06 Heat of formation + Delta-G solvation = 47.407020 kcal Electronic energy + Delta-G solvation = -28539.194288 eV Core-core repulsion = 24720.976436 eV Total energy + Delta-G solvation = -3818.217851 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 366.163 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.24859 -40.67779 -39.53407 -37.82694 -35.25835 -32.97023 -32.36050 -32.03892 -31.66833 -29.83365 -29.36457 -28.39656 -28.36431 -27.98950 -25.51862 -24.01378 -23.61572 -23.44704 -22.23828 -21.21899 -20.96873 -18.71403 -18.45633 -17.20331 -17.05805 -16.93333 -16.41279 -16.18072 -15.95189 -15.64501 -15.57928 -15.16997 -15.08811 -14.69701 -14.41320 -14.32433 -14.28533 -14.13460 -14.02902 -13.80392 -13.78934 -13.64459 -13.46504 -13.42184 -13.21875 -13.19140 -13.10594 -13.05513 -12.81826 -12.37033 -12.23858 -12.08505 -11.83617 -11.64194 -11.53493 -11.09075 -10.85364 -10.71058 -10.49628 -10.42998 -10.35024 -9.97869 -9.86103 -9.66384 -8.61859 -0.00280 0.18566 0.34176 0.69747 1.03938 1.09137 1.36835 1.46522 1.54684 1.81310 1.84050 1.86144 1.91171 2.19460 2.62003 2.66308 3.22988 3.26875 3.41054 3.52138 3.70932 3.74600 3.79871 3.88750 4.03624 4.10248 4.16147 4.22931 4.33974 4.35184 4.49413 4.52894 4.57057 4.63271 4.72143 4.74336 4.75140 4.77350 4.79827 4.80250 4.81562 4.83452 4.95216 4.97621 5.15461 5.23342 5.31479 5.42420 5.44386 5.46626 5.51032 5.55408 5.57930 5.73619 5.76759 5.83386 5.86406 5.98165 6.27429 6.48012 6.73280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.058 2.942 3 C -0.449 4.449 4 C -0.449 4.449 5 C -0.380 4.380 6 C -0.080 4.080 7 C -0.131 4.131 8 C 0.018 3.982 9 C -0.202 4.202 10 C 0.071 3.929 11 N -0.364 5.364 12 C 0.174 3.826 13 C -0.108 4.108 14 C -0.080 4.080 15 C -0.092 4.092 16 C -0.108 4.108 17 C -0.082 4.082 18 O -0.537 6.537 19 Si 0.950 3.050 20 H -0.251 1.251 21 H -0.253 1.253 22 H -0.252 1.252 23 C -0.129 4.129 24 C -0.093 4.093 25 N -0.283 5.283 26 C 0.063 3.937 27 C -0.136 4.136 28 C -0.081 4.081 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.176 0.824 41 H 0.107 0.893 42 H 0.097 0.903 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.119 0.881 46 H 0.376 0.624 47 H 0.122 0.878 48 H 0.125 0.875 49 H 0.184 0.816 50 H 0.115 0.885 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.073 3.359 0.292 3.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.250 2.750 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.423 4.423 6 C -0.098 4.098 7 C -0.149 4.149 8 C 0.016 3.984 9 C -0.214 4.214 10 C -0.076 4.076 11 N -0.145 5.145 12 C 0.054 3.946 13 C -0.109 4.109 14 C -0.099 4.099 15 C -0.110 4.110 16 C -0.108 4.108 17 C -0.193 4.193 18 O -0.342 6.342 19 Si 0.772 3.228 20 H -0.174 1.174 21 H -0.177 1.177 22 H -0.176 1.176 23 C -0.147 4.147 24 C -0.112 4.112 25 N -0.103 5.103 26 C -0.124 4.124 27 C -0.155 4.155 28 C -0.099 4.099 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.193 0.807 41 H 0.125 0.875 42 H 0.115 0.885 43 H 0.146 0.854 44 H 0.148 0.852 45 H 0.137 0.863 46 H 0.223 0.777 47 H 0.140 0.860 48 H 0.142 0.858 49 H 0.201 0.799 50 H 0.133 0.867 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.413 2.232 1.341 2.637 hybrid contribution 0.235 0.936 -0.388 1.041 sum -0.178 3.169 0.953 3.314 Atomic orbital electron populations 1.26136 1.20681 1.04509 1.04343 0.78158 0.66757 0.66079 0.64000 1.26136 1.06425 1.18691 1.04433 1.26137 1.06436 1.08045 1.15086 1.27268 1.05382 0.99496 1.10132 1.20974 0.96769 0.94561 0.97522 1.21148 1.01416 0.99619 0.92762 1.18072 0.96449 0.92578 0.91257 1.18924 1.14639 0.93533 0.94279 1.22566 0.99097 0.95406 0.90531 1.48586 1.50607 1.05407 1.09867 1.20634 0.99263 0.99806 0.74907 1.19778 0.96185 0.95675 0.99236 1.21104 0.99973 0.92535 0.96269 1.21036 0.93854 1.00083 0.96060 1.20384 0.96556 0.94763 0.99125 1.25007 1.03583 1.03726 0.86985 1.86531 1.77338 1.36505 1.33813 0.85678 0.76175 0.79502 0.81404 1.17421 1.17659 1.17554 1.21014 1.00012 0.93846 0.99825 1.20945 0.93750 0.99770 0.96719 1.77309 1.23275 1.04135 1.05581 1.23985 0.98025 0.95576 0.94833 1.21124 1.02056 0.93633 0.98638 1.20951 0.96910 0.99393 0.92638 0.91250 0.91183 0.91208 0.91096 0.91081 0.91252 0.91198 0.91093 0.91087 0.86246 0.86374 0.80717 0.87486 0.88482 0.85412 0.85164 0.86321 0.77657 0.86025 0.85751 0.79890 0.86744 0.86331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.47 8.65 101.05 0.87 1.35 16 2 Si 1.06 -2.21 12.31 -169.99 -2.09 -4.30 16 3 C -0.45 0.66 8.52 101.05 0.86 1.53 16 4 C -0.45 0.62 8.52 101.05 0.86 1.48 16 5 C -0.38 -0.10 4.60 -39.52 -0.18 -0.28 16 6 C -0.08 -0.07 9.28 -39.63 -0.37 -0.44 16 7 C -0.13 -0.21 9.58 -39.27 -0.38 -0.59 16 8 C 0.02 0.04 5.88 -104.89 -0.62 -0.58 16 9 C -0.20 -0.41 6.04 -105.34 -0.64 -1.04 16 10 C 0.07 0.04 10.83 -16.89 -0.18 -0.14 16 11 N -0.36 -0.44 3.66 -62.28 -0.23 -0.67 16 12 C 0.17 -0.24 6.62 -5.20 -0.03 -0.27 16 13 C -0.11 -0.01 5.31 -104.63 -0.56 -0.57 16 14 C -0.08 -0.05 9.70 -39.58 -0.38 -0.44 16 15 C -0.09 -0.08 9.69 -39.58 -0.38 -0.46 16 16 C -0.11 -0.06 5.35 -104.62 -0.56 -0.62 16 17 C -0.08 0.02 2.80 36.01 0.10 0.12 16 18 O -0.54 -0.17 12.83 -35.23 -0.45 -0.62 16 19 Si 0.95 -0.39 25.14 -169.99 -4.27 -4.67 16 20 H -0.25 -0.12 7.11 56.52 0.40 0.28 16 21 H -0.25 -0.26 7.11 56.52 0.40 0.14 16 22 H -0.25 0.13 7.04 56.52 0.40 0.53 16 23 C -0.13 -0.05 8.67 -39.58 -0.34 -0.39 16 24 C -0.09 0.00 9.70 -39.58 -0.38 -0.38 16 25 N -0.28 -0.97 12.37 30.80 0.38 -0.59 16 26 C 0.06 0.15 11.42 -17.06 -0.19 -0.04 16 27 C -0.14 -0.16 9.57 -39.26 -0.38 -0.54 16 28 C -0.08 -0.05 9.28 -39.63 -0.37 -0.42 16 29 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 30 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 31 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 32 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 33 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 34 H 0.07 -0.12 7.67 -51.93 -0.40 -0.51 16 35 H 0.07 -0.11 7.67 -51.93 -0.40 -0.50 16 36 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 37 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 38 H 0.12 -0.12 7.40 -52.48 -0.39 -0.51 16 39 H 0.12 0.01 7.05 -52.48 -0.37 -0.36 16 40 H 0.18 -0.46 7.28 -52.48 -0.38 -0.85 16 41 H 0.11 -0.44 8.01 -51.93 -0.42 -0.86 16 42 H 0.10 -0.21 8.09 -51.93 -0.42 -0.63 16 43 H 0.13 0.00 8.06 -52.49 -0.42 -0.42 16 44 H 0.13 0.02 8.06 -52.49 -0.42 -0.40 16 45 H 0.12 -0.09 7.96 -51.93 -0.41 -0.51 16 46 H 0.38 -1.11 8.70 45.56 0.40 -0.71 16 47 H 0.12 -0.09 4.87 -52.49 -0.26 -0.34 16 48 H 0.12 -0.22 8.06 -52.49 -0.42 -0.65 16 49 H 0.18 0.02 7.35 -52.49 -0.39 -0.37 16 50 H 0.11 -0.09 7.02 -52.49 -0.37 -0.46 16 51 H 0.12 -0.16 7.40 -52.49 -0.39 -0.54 16 LS Contribution 423.97 15.07 6.39 6.39 Total: 0.00 -7.67 423.97 -10.67 -18.34 By element: Atomic # 1 Polarization: -4.00 SS G_CDS: -7.15 Total: -11.15 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -3.25 Total: -2.74 kcal Atomic # 7 Polarization: -1.41 SS G_CDS: 0.15 Total: -1.25 kcal Atomic # 8 Polarization: -0.17 SS G_CDS: -0.45 Total: -0.62 kcal Atomic # 14 Polarization: -2.60 SS G_CDS: -6.37 Total: -8.97 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -7.67 -10.67 -18.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_15738430.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.749 kcal (2) G-P(sol) polarization free energy of solvation -7.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds