Wall clock time and date at job start Mon Mar 8 2021 09:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86294 * 109.47107 * 2 1 4 4 C 1.86294 * 109.46873 * 239.99780 * 2 1 3 5 5 C 1.86800 * 109.46954 * 120.00211 * 2 1 3 6 6 C 1.38317 * 119.88564 * 90.00128 * 5 2 1 7 7 C 1.38020 * 120.12176 * 180.02562 * 6 5 2 8 8 C 1.39303 * 119.87870 * 359.97134 * 7 6 5 9 9 C 1.48479 * 120.11809 * 179.97438 * 8 7 6 10 10 C 1.36430 * 126.22833 * 180.02562 * 9 8 7 11 11 N 1.34827 * 107.61371 * 180.02562 * 10 9 8 12 12 C 1.46499 * 125.89459 * 179.97438 * 11 10 9 13 13 C 1.50693 * 109.47329 * 124.99954 * 12 11 10 14 14 C 1.38233 * 120.00207 * 89.99403 * 13 12 11 15 15 C 1.38234 * 120.00037 * 179.72405 * 14 13 12 16 16 C 1.38234 * 120.00240 * 0.26327 * 15 14 13 17 17 C 1.50701 * 120.00243 * 180.02562 * 16 15 14 18 18 O 1.42901 * 109.46864 * 65.00281 * 17 16 15 19 19 Si 1.86301 * 109.47201 * 184.99846 * 17 16 15 20 20 H 1.48501 * 109.47024 * 59.99906 * 19 17 16 21 21 H 1.48499 * 109.47052 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47162 * 300.00395 * 19 17 16 23 23 C 1.38238 * 119.99693 * 359.97438 * 16 15 14 24 24 C 1.38234 * 120.00082 * 0.02562 * 23 16 15 25 25 N 1.40016 * 108.20813 * 0.22829 * 11 10 9 26 26 C 1.30672 * 108.52518 * 359.60996 * 25 11 10 27 27 C 1.39298 * 119.76888 * 0.25869 * 8 7 6 28 28 C 1.38035 * 119.87674 * 359.49054 * 27 8 7 29 29 H 1.09006 * 109.47427 * 299.99560 * 1 2 3 30 30 H 1.08996 * 109.47396 * 60.00061 * 1 2 3 31 31 H 1.09004 * 109.47288 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47093 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47293 * 300.00192 * 3 2 1 34 34 H 1.08999 * 109.47249 * 60.00059 * 3 2 1 35 35 H 1.08996 * 109.47862 * 300.00042 * 4 2 1 36 36 H 1.09002 * 109.47263 * 60.00541 * 4 2 1 37 37 H 1.09001 * 109.47365 * 179.97438 * 4 2 1 38 38 H 1.08009 * 119.93780 * 359.97438 * 6 5 2 39 39 H 1.08004 * 120.06282 * 180.02562 * 7 6 5 40 40 H 1.08003 * 126.19045 * 0.06099 * 10 9 8 41 41 H 1.09000 * 109.46981 * 4.99943 * 12 11 10 42 42 H 1.09001 * 109.46676 * 244.99757 * 12 11 10 43 43 H 1.08002 * 120.00157 * 0.02562 * 14 13 12 44 44 H 1.07999 * 120.00009 * 180.28389 * 15 14 13 45 45 H 1.08991 * 109.47143 * 304.99866 * 17 16 15 46 46 H 0.96698 * 114.00406 * 59.99991 * 18 17 16 47 47 H 1.08001 * 119.99643 * 179.97438 * 23 16 15 48 48 H 1.07999 * 120.00025 * 179.97438 * 24 23 16 49 49 H 1.08001 * 125.94670 * 180.11163 * 26 25 11 50 50 H 1.08000 * 120.06055 * 179.74999 * 27 8 7 51 51 H 1.08000 * 119.93538 * 180.23399 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5211 5 6 2.4856 -0.8807 1.5252 6 6 2.7154 -2.2441 1.4883 7 6 3.1749 -2.8998 2.6125 8 6 3.4079 -2.1858 3.7857 9 6 3.9017 -2.8859 4.9984 10 6 4.1699 -2.3129 6.2071 11 7 4.5953 -3.2880 7.0354 12 6 4.9927 -3.1137 8.4346 13 6 4.1891 -4.0453 9.3049 14 6 4.6574 -5.3182 9.5716 15 6 3.9229 -6.1707 10.3745 16 6 2.7176 -5.7522 10.9063 17 6 1.9172 -6.6813 11.7822 18 8 2.6454 -6.9503 12.9819 19 14 0.2891 -5.8830 12.2099 20 1 -0.4677 -5.6034 10.9631 21 1 -0.4993 -6.7984 13.0734 22 1 0.5369 -4.6106 12.9343 23 6 2.2469 -4.4809 10.6356 24 6 2.9814 -3.6284 9.8327 25 7 4.5974 -4.4950 6.3256 26 6 4.1790 -4.2623 5.1097 27 6 3.1703 -0.8136 3.8189 28 6 2.7157 -0.1668 2.6874 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 3.5739 1.7564 0.0005 33 1 2.1206 2.2703 -0.8900 34 1 2.1207 2.2702 0.8900 35 1 2.1206 -1.9059 -1.5211 36 1 2.1206 -0.3644 -2.4111 37 1 3.5739 -0.8779 -1.5214 38 1 2.5340 -2.7968 0.5782 39 1 3.3543 -3.9644 2.5824 40 1 4.0605 -1.2676 6.4557 41 1 4.8090 -2.0833 8.7388 42 1 6.0534 -3.3408 8.5420 43 1 5.5994 -5.6451 9.1566 44 1 4.2910 -7.1637 10.5866 45 1 1.7353 -7.6152 11.2504 46 1 2.8430 -6.1628 13.5071 47 1 1.3050 -4.1540 11.0508 48 1 2.6135 -2.6353 9.6208 49 1 4.0695 -4.9967 4.3255 50 1 3.3455 -0.2561 4.7272 51 1 2.5348 0.8976 2.7110 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_15738430.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:24:05 Heat of formation + Delta-G solvation = 56.884386 kcal Electronic energy + Delta-G solvation = -28538.783318 eV Core-core repulsion = 24720.976436 eV Total energy + Delta-G solvation = -3817.806882 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 366.163 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.28317 -40.65795 -39.52872 -37.80908 -35.23374 -32.98308 -32.38415 -32.02815 -31.66844 -29.79554 -29.26855 -28.25611 -28.24096 -27.97626 -25.49290 -24.00506 -23.61670 -23.46545 -22.23681 -21.22442 -20.99623 -18.70342 -18.44073 -17.17884 -17.03550 -16.89792 -16.39329 -16.16704 -15.94253 -15.65757 -15.59891 -15.17241 -15.09125 -14.66203 -14.38464 -14.29868 -14.24185 -14.02244 -13.93309 -13.75616 -13.69015 -13.60324 -13.45072 -13.34776 -13.09072 -13.08164 -13.07205 -12.93324 -12.76213 -12.34398 -12.24038 -12.09246 -11.84078 -11.63890 -11.56338 -11.01438 -10.71554 -10.66095 -10.51581 -10.46229 -10.33731 -9.98377 -9.85110 -9.68763 -8.65029 0.00690 0.18077 0.33933 0.67283 0.98389 1.11518 1.38841 1.46784 1.58547 1.84190 1.85579 1.94065 2.08038 2.27005 2.67342 2.73289 3.20679 3.34189 3.49270 3.59459 3.76954 3.80680 3.83376 3.93341 4.10874 4.13675 4.26049 4.28320 4.33836 4.39504 4.52165 4.54731 4.59575 4.65755 4.72185 4.86293 4.86680 4.87400 4.89957 4.91521 4.93037 4.94125 4.97540 4.99429 5.15078 5.24317 5.31962 5.42199 5.43706 5.47506 5.60731 5.67765 5.69647 5.71601 5.78151 5.80664 5.88163 6.01941 6.28435 6.64990 6.66182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.124 2.876 3 C -0.460 4.460 4 C -0.463 4.463 5 C -0.394 4.394 6 C -0.094 4.094 7 C -0.150 4.150 8 C 0.003 3.997 9 C -0.221 4.221 10 C 0.077 3.923 11 N -0.364 5.364 12 C 0.169 3.831 13 C -0.112 4.112 14 C -0.091 4.091 15 C -0.106 4.106 16 C -0.114 4.114 17 C -0.082 4.082 18 O -0.551 6.551 19 Si 0.984 3.016 20 H -0.263 1.263 21 H -0.275 1.275 22 H -0.246 1.246 23 C -0.140 4.140 24 C -0.098 4.098 25 N -0.318 5.318 26 C 0.050 3.950 27 C -0.147 4.147 28 C -0.093 4.093 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.133 0.867 39 H 0.122 0.878 40 H 0.208 0.792 41 H 0.141 0.859 42 H 0.103 0.897 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.119 0.881 46 H 0.389 0.611 47 H 0.132 0.868 48 H 0.145 0.855 49 H 0.192 0.808 50 H 0.132 0.868 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.235 5.210 0.305 5.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.311 2.689 3 C -0.567 4.567 4 C -0.570 4.570 5 C -0.434 4.434 6 C -0.112 4.112 7 C -0.169 4.169 8 C 0.001 3.999 9 C -0.232 4.232 10 C -0.070 4.070 11 N -0.144 5.144 12 C 0.050 3.950 13 C -0.112 4.112 14 C -0.110 4.110 15 C -0.124 4.124 16 C -0.115 4.115 17 C -0.193 4.193 18 O -0.359 6.359 19 Si 0.808 3.192 20 H -0.188 1.188 21 H -0.200 1.200 22 H -0.169 1.169 23 C -0.158 4.158 24 C -0.116 4.116 25 N -0.138 5.138 26 C -0.136 4.136 27 C -0.165 4.165 28 C -0.111 4.111 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.150 0.850 39 H 0.140 0.860 40 H 0.225 0.775 41 H 0.158 0.842 42 H 0.121 0.879 43 H 0.146 0.854 44 H 0.148 0.852 45 H 0.137 0.863 46 H 0.238 0.762 47 H 0.149 0.851 48 H 0.163 0.837 49 H 0.209 0.791 50 H 0.150 0.850 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.559 4.078 1.372 4.339 hybrid contribution 0.286 0.349 -0.386 0.594 sum -0.272 4.427 0.986 4.544 Atomic orbital electron populations 1.26305 1.21912 1.04277 1.04444 0.77165 0.65034 0.64770 0.61911 1.26250 1.06375 1.19261 1.04810 1.26294 1.06355 1.08418 1.15912 1.27832 1.04800 0.99488 1.11283 1.21250 0.96859 0.95202 0.97875 1.21379 1.02035 1.00167 0.93289 1.18233 0.97046 0.93195 0.91403 1.19093 1.15558 0.93463 0.95074 1.23069 0.97530 0.96558 0.89843 1.48772 1.50183 1.04901 1.10561 1.20926 0.99343 1.01320 0.73454 1.19949 0.96439 0.95615 0.99229 1.21232 1.00168 0.93119 0.96456 1.21137 0.94338 1.00305 0.96628 1.20490 0.96539 0.95139 0.99285 1.25053 1.03595 1.03773 0.86834 1.86494 1.77452 1.37783 1.34123 0.85192 0.74987 0.78915 0.80078 1.18759 1.19995 1.16903 1.21219 1.00543 0.93876 1.00128 1.21234 0.93543 1.00638 0.96209 1.77244 1.24545 1.05818 1.06225 1.24246 0.98011 0.96391 0.94962 1.21412 1.01957 0.93486 0.99685 1.21289 0.96701 1.00467 0.92608 0.91417 0.90823 0.91630 0.91303 0.90801 0.90829 0.91117 0.90804 0.91377 0.84956 0.85976 0.77506 0.84153 0.87896 0.85437 0.85248 0.86269 0.76154 0.85090 0.83727 0.79121 0.84974 0.84479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.19 8.65 113.37 0.98 2.17 16 2 Si 1.12 -5.39 12.31 68.60 0.84 -4.55 16 3 C -0.46 1.82 8.52 113.37 0.97 2.78 16 4 C -0.46 1.45 8.52 113.37 0.97 2.41 16 5 C -0.39 -0.14 4.60 22.31 0.10 -0.03 16 6 C -0.09 -0.20 9.28 22.24 0.21 0.00 16 7 C -0.15 -0.64 9.58 22.47 0.22 -0.42 16 8 C 0.00 0.01 5.88 -20.04 -0.12 -0.11 16 9 C -0.22 -0.97 6.04 -20.33 -0.12 -1.09 16 10 C 0.08 0.02 10.83 83.81 0.91 0.93 16 11 N -0.36 -0.73 3.66 -350.97 -1.28 -2.02 16 12 C 0.17 -0.63 6.62 85.63 0.57 -0.06 16 13 C -0.11 0.00 5.31 -19.87 -0.11 -0.10 16 14 C -0.09 -0.20 9.70 22.27 0.22 0.02 16 15 C -0.11 -0.29 9.69 22.27 0.22 -0.08 16 16 C -0.11 -0.19 5.35 -19.86 -0.11 -0.30 16 17 C -0.08 -0.01 2.80 71.24 0.20 0.19 16 18 O -0.55 -0.59 12.83 -148.98 -1.91 -2.50 16 19 Si 0.98 -0.59 25.14 68.60 1.72 1.13 16 20 H -0.26 -0.35 7.11 99.48 0.71 0.36 16 21 H -0.27 -0.79 7.11 99.48 0.71 -0.09 16 22 H -0.25 0.43 7.04 99.48 0.70 1.13 16 23 C -0.14 -0.08 8.67 22.27 0.19 0.11 16 24 C -0.10 0.07 9.70 22.27 0.22 0.29 16 25 N -0.32 -2.47 12.37 -56.46 -0.70 -3.17 16 26 C 0.05 0.31 11.42 85.50 0.98 1.28 16 27 C -0.15 -0.29 9.57 22.48 0.22 -0.07 16 28 C -0.09 -0.06 9.28 22.24 0.21 0.14 16 29 H 0.07 -0.14 7.96 -2.38 -0.02 -0.16 16 30 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 31 H 0.06 -0.10 7.96 -2.38 -0.02 -0.12 16 32 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 33 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 34 H 0.07 -0.34 7.67 -2.39 -0.02 -0.36 16 35 H 0.07 -0.23 7.67 -2.39 -0.02 -0.25 16 36 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 37 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 38 H 0.13 -0.22 7.40 -2.91 -0.02 -0.24 16 39 H 0.12 0.23 7.05 -2.91 -0.02 0.21 16 40 H 0.21 -1.57 7.28 -2.91 -0.02 -1.59 16 41 H 0.14 -1.51 8.01 -2.39 -0.02 -1.53 16 42 H 0.10 -0.50 8.09 -2.39 -0.02 -0.52 16 43 H 0.13 0.17 8.06 -2.91 -0.02 0.15 16 44 H 0.13 0.25 8.06 -2.91 -0.02 0.23 16 45 H 0.12 -0.07 7.96 -2.39 -0.02 -0.09 16 46 H 0.39 -2.22 8.70 -74.06 -0.64 -2.86 16 47 H 0.13 -0.26 4.87 -2.91 -0.01 -0.28 16 48 H 0.14 -0.78 8.06 -2.91 -0.02 -0.81 16 49 H 0.19 0.42 7.35 -2.91 -0.02 0.40 16 50 H 0.13 -0.38 7.02 -2.91 -0.02 -0.40 16 51 H 0.14 -0.53 7.40 -2.91 -0.02 -0.55 16 Total: 0.00 -18.30 423.97 6.61 -11.69 By element: Atomic # 1 Polarization: -9.68 SS G_CDS: 1.03 Total: -8.65 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 6.90 Total: 8.05 kcal Atomic # 7 Polarization: -3.20 SS G_CDS: -1.98 Total: -5.18 kcal Atomic # 8 Polarization: -0.59 SS G_CDS: -1.91 Total: -2.50 kcal Atomic # 14 Polarization: -5.98 SS G_CDS: 2.57 Total: -3.42 kcal Total: -18.30 6.61 -11.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_15738430.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.577 kcal (2) G-P(sol) polarization free energy of solvation -18.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds