Wall clock time and date at job start Mon Mar 8 2021 09:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86305 * 109.47067 * 2 1 4 4 C 1.86302 * 109.47114 * 240.00245 * 2 1 3 5 5 C 1.86800 * 109.47399 * 120.00025 * 2 1 3 6 6 C 1.38317 * 119.87401 * 90.00073 * 5 2 1 7 7 C 1.38018 * 120.11865 * 180.02562 * 6 5 2 8 8 C 1.39343 * 119.87727 * 359.97438 * 7 6 5 9 9 C 1.48376 * 120.12257 * 180.02562 * 8 7 6 10 10 C 1.39257 * 120.10177 * 129.72243 * 9 8 7 11 11 C 1.38512 * 119.83939 * 179.70078 * 10 9 8 12 12 O 1.35947 * 119.96892 * 180.32597 * 11 10 9 13 13 C 1.38773 * 120.06167 * 0.59842 * 11 10 9 14 14 C 1.50703 * 119.88937 * 179.69828 * 13 11 10 15 15 O 1.42904 * 109.47055 * 284.98026 * 14 13 11 16 16 Si 1.86299 * 109.46939 * 164.98132 * 14 13 11 17 17 H 1.48505 * 109.47180 * 60.00045 * 16 14 13 18 18 H 1.48503 * 109.47093 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47218 * 300.00065 * 16 14 13 20 20 C 1.38241 * 120.21538 * 359.68113 * 13 11 10 21 21 C 1.38231 * 120.15221 * 0.02562 * 20 13 11 22 22 F 1.35104 * 120.03131 * 179.97438 * 21 20 13 23 23 C 1.39343 * 119.75902 * 0.27778 * 8 7 6 24 24 C 1.38021 * 119.87466 * 359.47201 * 23 8 7 25 25 H 1.08995 * 109.47113 * 299.99856 * 1 2 3 26 26 H 1.09002 * 109.47583 * 60.00061 * 1 2 3 27 27 H 1.09006 * 109.46910 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46999 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46869 * 300.00376 * 3 2 1 30 30 H 1.09004 * 109.47046 * 59.99895 * 3 2 1 31 31 H 1.09002 * 109.46765 * 299.99999 * 4 2 1 32 32 H 1.09002 * 109.47145 * 59.99425 * 4 2 1 33 33 H 1.09000 * 109.47357 * 179.97438 * 4 2 1 34 34 H 1.08003 * 119.94484 * 359.97438 * 6 5 2 35 35 H 1.07996 * 120.06257 * 180.02562 * 7 6 5 36 36 H 1.07997 * 120.07836 * 0.02562 * 10 9 8 37 37 H 0.96706 * 113.99888 * 270.28193 * 12 11 10 38 38 H 1.08998 * 109.47061 * 44.98064 * 14 13 11 39 39 H 0.96702 * 114.00265 * 299.99731 * 15 14 13 40 40 H 1.08004 * 119.92293 * 180.02562 * 20 13 11 41 41 H 1.08002 * 120.06685 * 179.72514 * 23 8 7 42 42 H 1.08000 * 119.94418 * 180.28091 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4858 -0.8806 1.5252 6 6 2.7155 -2.2440 1.4880 7 6 3.1751 -2.8998 2.6121 8 6 3.4082 -2.1857 3.7857 9 6 3.9028 -2.8851 4.9971 10 6 5.0093 -2.3931 5.6848 11 6 5.4627 -3.0468 6.8187 12 8 6.5386 -2.5650 7.4959 13 6 4.8232 -4.1963 7.2609 14 6 5.3239 -4.9083 8.4911 15 8 6.5229 -5.6189 8.1754 16 14 4.0286 -6.1087 9.0843 17 1 3.7486 -7.1024 8.0167 18 1 4.5218 -6.8099 10.2969 19 1 2.7826 -5.3704 9.4123 20 6 3.7281 -4.6902 6.5767 21 6 3.2645 -4.0415 5.4476 22 9 2.1944 -4.5265 4.7806 23 6 3.1700 -0.8132 3.8190 24 6 2.7154 -0.1666 2.6875 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.5739 1.7565 -0.0005 29 1 2.1206 2.2703 -0.8900 30 1 2.1206 2.2704 0.8900 31 1 2.1206 -1.9058 -1.5212 32 1 2.1206 -0.3644 -2.4112 33 1 3.5740 -0.8778 -1.5215 34 1 2.5341 -2.7967 0.5780 35 1 3.3545 -3.9644 2.5819 36 1 5.5094 -1.5010 5.3379 37 1 7.3858 -2.9168 7.1897 38 1 5.5294 -4.1790 9.2746 39 1 6.4142 -6.2861 7.4839 40 1 3.2338 -5.5849 6.9253 41 1 3.3448 -0.2555 4.7272 42 1 2.5348 0.8979 2.7107 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_16463738.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:24:21 Heat of formation + Delta-G solvation = -117.890456 kcal Electronic energy + Delta-G solvation = -24030.817074 eV Core-core repulsion = 20399.438319 eV Total energy + Delta-G solvation = -3631.378755 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.116 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.91402 -41.25411 -39.85805 -37.82275 -37.43737 -33.94845 -31.95780 -30.96604 -30.37067 -29.51241 -28.46296 -28.42383 -26.76417 -24.32125 -23.52931 -23.11581 -21.97539 -19.57784 -18.82874 -18.19666 -17.76171 -17.05317 -16.81970 -16.57917 -16.16791 -15.92348 -15.80652 -15.63022 -15.06795 -14.72643 -14.55001 -14.38581 -14.34812 -14.17829 -14.10715 -13.86543 -13.69168 -13.32411 -13.28001 -13.23737 -13.11910 -12.96449 -12.86549 -12.43052 -12.22344 -11.99230 -11.85706 -11.71100 -11.09092 -10.92468 -10.85998 -10.52015 -10.41189 -9.82188 -9.77573 -9.23615 -0.43843 -0.07068 0.42818 0.53423 1.04162 1.32760 1.45438 1.68704 1.83168 1.83841 1.91746 2.17924 2.52574 2.86779 2.99314 3.11032 3.31421 3.44799 3.53093 3.74059 3.99931 4.06395 4.11105 4.37721 4.48384 4.54930 4.59567 4.66282 4.68668 4.69227 4.71343 4.73670 4.74943 4.75579 4.77476 4.93678 4.96601 5.13072 5.15102 5.34879 5.42984 5.47824 5.52848 5.57493 5.59271 5.60659 6.07876 6.40493 6.58387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.059 2.941 3 C -0.449 4.449 4 C -0.450 4.450 5 C -0.364 4.364 6 C -0.087 4.087 7 C -0.107 4.107 8 C -0.049 4.049 9 C -0.055 4.055 10 C -0.106 4.106 11 C 0.131 3.869 12 O -0.488 6.488 13 C -0.119 4.119 14 C -0.075 4.075 15 O -0.535 6.535 16 Si 0.945 3.055 17 H -0.251 1.251 18 H -0.248 1.248 19 H -0.247 1.247 20 C -0.146 4.146 21 C 0.107 3.893 22 F -0.128 7.128 23 C -0.110 4.110 24 C -0.088 4.088 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.144 0.856 37 H 0.398 0.602 38 H 0.126 0.874 39 H 0.376 0.624 40 H 0.142 0.858 41 H 0.122 0.878 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.833 0.254 -2.019 2.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.251 2.749 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.405 4.405 6 C -0.105 4.105 7 C -0.125 4.125 8 C -0.049 4.049 9 C -0.056 4.056 10 C -0.124 4.124 11 C 0.085 3.915 12 O -0.299 6.299 13 C -0.120 4.120 14 C -0.186 4.186 15 O -0.340 6.340 16 Si 0.768 3.232 17 H -0.175 1.175 18 H -0.172 1.172 19 H -0.170 1.170 20 C -0.164 4.164 21 C 0.087 3.913 22 F -0.107 7.107 23 C -0.128 4.128 24 C -0.106 4.106 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.162 0.838 37 H 0.255 0.745 38 H 0.144 0.856 39 H 0.223 0.777 40 H 0.160 0.840 41 H 0.140 0.860 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.010 0.324 -0.909 0.965 hybrid contribution 0.286 -0.452 -0.760 0.929 sum 0.296 -0.128 -1.668 1.699 Atomic orbital electron populations 1.26127 1.20449 1.04613 1.04502 0.78190 0.66901 0.66126 0.63680 1.26132 1.06459 1.18521 1.04592 1.26135 1.06458 1.08066 1.15068 1.27492 1.03254 0.99476 1.10293 1.21016 0.97208 0.94611 0.97678 1.21270 0.99066 0.99616 0.92512 1.18564 1.00757 0.93585 0.92020 1.18743 0.96239 0.94423 0.96221 1.21456 0.96307 1.00911 0.93730 1.18071 0.90871 0.91658 0.90870 1.84793 1.16017 1.69123 1.59953 1.20525 0.96697 0.96034 0.98758 1.24924 0.95755 1.00922 0.96953 1.86547 1.31880 1.54464 1.61067 0.85746 0.77535 0.78895 0.81057 1.17456 1.17180 1.16992 1.20966 0.98172 1.01692 0.95590 1.17515 0.86802 0.94156 0.92786 1.91537 1.52631 1.87125 1.79390 1.21275 0.99570 0.93108 0.98873 1.21026 0.97358 0.99758 0.92487 0.91157 0.91021 0.91152 0.91042 0.90932 0.91155 0.91159 0.90931 0.91046 0.85811 0.86179 0.83823 0.74451 0.85626 0.77722 0.84031 0.85953 0.85777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.60 8.65 101.05 0.87 1.48 16 2 Si 1.06 -2.64 12.31 -169.99 -2.09 -4.73 16 3 C -0.45 0.85 8.52 101.05 0.86 1.71 16 4 C -0.45 0.82 8.52 101.05 0.86 1.68 16 5 C -0.36 0.02 4.60 -39.52 -0.18 -0.16 16 6 C -0.09 -0.06 9.28 -39.63 -0.37 -0.43 16 7 C -0.11 -0.19 8.86 -39.25 -0.35 -0.54 16 8 C -0.05 -0.10 5.31 -104.90 -0.56 -0.66 16 9 C -0.06 -0.09 5.48 -104.85 -0.57 -0.67 16 10 C -0.11 -0.07 9.46 -39.10 -0.37 -0.44 16 11 C 0.13 0.08 6.67 -39.28 -0.26 -0.18 16 12 O -0.49 -0.04 12.81 -19.57 -0.25 -0.30 16 13 C -0.12 -0.03 5.28 -104.42 -0.55 -0.59 16 14 C -0.08 0.05 2.37 36.01 0.09 0.13 16 15 O -0.53 0.44 12.88 -35.23 -0.45 -0.02 16 16 Si 0.95 -0.68 25.48 -169.99 -4.33 -5.01 16 17 H -0.25 0.23 6.73 56.52 0.38 0.61 16 18 H -0.25 -0.15 7.11 56.52 0.40 0.25 16 19 H -0.25 -0.08 7.11 56.52 0.40 0.32 16 20 C -0.15 -0.11 8.62 -39.58 -0.34 -0.45 16 21 C 0.11 0.22 7.16 -39.09 -0.28 -0.06 16 22 F -0.13 -0.41 15.89 2.25 0.04 -0.37 16 23 C -0.11 -0.14 9.52 -39.25 -0.37 -0.51 16 24 C -0.09 -0.03 9.28 -39.63 -0.37 -0.40 16 25 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 26 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 27 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 28 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 29 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 30 H 0.07 -0.14 7.67 -51.93 -0.40 -0.54 16 31 H 0.07 -0.14 7.67 -51.93 -0.40 -0.53 16 32 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 33 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 34 H 0.12 -0.16 7.40 -52.48 -0.39 -0.55 16 35 H 0.12 0.13 7.78 -52.49 -0.41 -0.27 16 36 H 0.14 -0.08 8.05 -52.49 -0.42 -0.50 16 37 H 0.40 -1.39 9.06 45.56 0.41 -0.98 16 38 H 0.13 -0.07 7.82 -51.93 -0.41 -0.48 16 39 H 0.38 -1.52 8.70 45.56 0.40 -1.13 16 40 H 0.14 -0.06 4.87 -52.48 -0.26 -0.32 16 41 H 0.12 0.00 8.05 -52.49 -0.42 -0.42 16 42 H 0.12 -0.20 7.40 -52.49 -0.39 -0.59 16 LS Contribution 358.10 15.07 5.40 5.40 Total: 0.00 -5.91 358.10 -7.98 -13.89 By element: Atomic # 1 Polarization: -4.41 SS G_CDS: -4.39 Total: -8.80 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -1.89 Total: -0.07 kcal Atomic # 8 Polarization: 0.39 SS G_CDS: -0.70 Total: -0.31 kcal Atomic # 9 Polarization: -0.41 SS G_CDS: 0.04 Total: -0.37 kcal Atomic # 14 Polarization: -3.31 SS G_CDS: -6.42 Total: -9.74 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -5.91 -7.98 -13.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_16463738.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.998 kcal (2) G-P(sol) polarization free energy of solvation -5.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds