Wall clock time and date at job start Mon Mar 8 2021 09:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86305 * 109.47067 * 2 1 4 4 C 1.86302 * 109.47114 * 240.00245 * 2 1 3 5 5 C 1.86800 * 109.47399 * 120.00025 * 2 1 3 6 6 C 1.38317 * 119.87401 * 90.00073 * 5 2 1 7 7 C 1.38018 * 120.11865 * 180.02562 * 6 5 2 8 8 C 1.39343 * 119.87727 * 359.97438 * 7 6 5 9 9 C 1.48376 * 120.12257 * 180.02562 * 8 7 6 10 10 C 1.39257 * 120.10177 * 129.72243 * 9 8 7 11 11 C 1.38512 * 119.83939 * 179.70078 * 10 9 8 12 12 O 1.35947 * 119.96892 * 180.32597 * 11 10 9 13 13 C 1.38773 * 120.06167 * 0.59842 * 11 10 9 14 14 C 1.50703 * 119.88937 * 179.69828 * 13 11 10 15 15 O 1.42904 * 109.47055 * 284.98026 * 14 13 11 16 16 Si 1.86299 * 109.46939 * 164.98132 * 14 13 11 17 17 H 1.48505 * 109.47180 * 60.00045 * 16 14 13 18 18 H 1.48503 * 109.47093 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47218 * 300.00065 * 16 14 13 20 20 C 1.38241 * 120.21538 * 359.68113 * 13 11 10 21 21 C 1.38231 * 120.15221 * 0.02562 * 20 13 11 22 22 F 1.35104 * 120.03131 * 179.97438 * 21 20 13 23 23 C 1.39343 * 119.75902 * 0.27778 * 8 7 6 24 24 C 1.38021 * 119.87466 * 359.47201 * 23 8 7 25 25 H 1.08995 * 109.47113 * 299.99856 * 1 2 3 26 26 H 1.09002 * 109.47583 * 60.00061 * 1 2 3 27 27 H 1.09006 * 109.46910 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46999 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46869 * 300.00376 * 3 2 1 30 30 H 1.09004 * 109.47046 * 59.99895 * 3 2 1 31 31 H 1.09002 * 109.46765 * 299.99999 * 4 2 1 32 32 H 1.09002 * 109.47145 * 59.99425 * 4 2 1 33 33 H 1.09000 * 109.47357 * 179.97438 * 4 2 1 34 34 H 1.08003 * 119.94484 * 359.97438 * 6 5 2 35 35 H 1.07996 * 120.06257 * 180.02562 * 7 6 5 36 36 H 1.07997 * 120.07836 * 0.02562 * 10 9 8 37 37 H 0.96706 * 113.99888 * 270.28193 * 12 11 10 38 38 H 1.08998 * 109.47061 * 44.98064 * 14 13 11 39 39 H 0.96702 * 114.00265 * 299.99731 * 15 14 13 40 40 H 1.08004 * 119.92293 * 180.02562 * 20 13 11 41 41 H 1.08002 * 120.06685 * 179.72514 * 23 8 7 42 42 H 1.08000 * 119.94418 * 180.28091 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4858 -0.8806 1.5252 6 6 2.7155 -2.2440 1.4880 7 6 3.1751 -2.8998 2.6121 8 6 3.4082 -2.1857 3.7857 9 6 3.9028 -2.8851 4.9971 10 6 5.0093 -2.3931 5.6848 11 6 5.4627 -3.0468 6.8187 12 8 6.5386 -2.5650 7.4959 13 6 4.8232 -4.1963 7.2609 14 6 5.3239 -4.9083 8.4911 15 8 6.5229 -5.6189 8.1754 16 14 4.0286 -6.1087 9.0843 17 1 3.7486 -7.1024 8.0167 18 1 4.5218 -6.8099 10.2969 19 1 2.7826 -5.3704 9.4123 20 6 3.7281 -4.6902 6.5767 21 6 3.2645 -4.0415 5.4476 22 9 2.1944 -4.5265 4.7806 23 6 3.1700 -0.8132 3.8190 24 6 2.7154 -0.1666 2.6875 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.5739 1.7565 -0.0005 29 1 2.1206 2.2703 -0.8900 30 1 2.1206 2.2704 0.8900 31 1 2.1206 -1.9058 -1.5212 32 1 2.1206 -0.3644 -2.4112 33 1 3.5740 -0.8778 -1.5215 34 1 2.5341 -2.7967 0.5780 35 1 3.3545 -3.9644 2.5819 36 1 5.5094 -1.5010 5.3379 37 1 7.3858 -2.9168 7.1897 38 1 5.5294 -4.1790 9.2746 39 1 6.4142 -6.2861 7.4839 40 1 3.2338 -5.5849 6.9253 41 1 3.3448 -0.2555 4.7272 42 1 2.5348 0.8979 2.7107 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_16463738.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:24:20 Heat of formation + Delta-G solvation = -110.760110 kcal Electronic energy + Delta-G solvation = -24030.507879 eV Core-core repulsion = 20399.438319 eV Total energy + Delta-G solvation = -3631.069560 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.116 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.07246 -41.27867 -39.86638 -37.77914 -37.43683 -33.96196 -31.97411 -30.98265 -30.39498 -29.36384 -28.28969 -28.27335 -26.76199 -24.35468 -23.55007 -23.14305 -22.00774 -19.57504 -18.87535 -18.24397 -17.77429 -17.05456 -16.90212 -16.60487 -16.19279 -15.91359 -15.81087 -15.65958 -15.07290 -14.74751 -14.56982 -14.37623 -14.31996 -14.03954 -13.99906 -13.74214 -13.64757 -13.27413 -13.15953 -13.10650 -12.97226 -12.93370 -12.88174 -12.41361 -12.23755 -11.99285 -11.83911 -11.69859 -10.97969 -10.80729 -10.75582 -10.47280 -10.42075 -9.86501 -9.81756 -9.28314 -0.48220 -0.12179 0.40433 0.49162 1.08784 1.36832 1.47871 1.82998 1.85813 2.02990 2.04623 2.17693 2.66199 2.85153 2.95841 3.09408 3.32006 3.49428 3.53716 3.74206 3.99260 4.04390 4.09687 4.39060 4.49964 4.53126 4.58153 4.67471 4.74096 4.83973 4.84545 4.88028 4.89045 4.90027 4.91066 4.91838 4.94171 5.10398 5.13474 5.33189 5.51312 5.54737 5.56118 5.59523 5.67646 5.71026 6.07461 6.64072 6.72272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.127 2.873 3 C -0.460 4.460 4 C -0.462 4.462 5 C -0.375 4.375 6 C -0.098 4.098 7 C -0.124 4.124 8 C -0.065 4.065 9 C -0.060 4.060 10 C -0.107 4.107 11 C 0.132 3.868 12 O -0.496 6.496 13 C -0.120 4.120 14 C -0.068 4.068 15 O -0.543 6.543 16 Si 0.973 3.027 17 H -0.245 1.245 18 H -0.266 1.266 19 H -0.263 1.263 20 C -0.145 4.145 21 C 0.087 3.913 22 F -0.140 7.140 23 C -0.123 4.123 24 C -0.097 4.097 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.140 0.860 35 H 0.118 0.882 36 H 0.153 0.847 37 H 0.413 0.587 38 H 0.125 0.875 39 H 0.390 0.610 40 H 0.151 0.849 41 H 0.130 0.870 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.168 0.736 -2.434 2.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.315 2.685 3 C -0.568 4.568 4 C -0.569 4.569 5 C -0.414 4.414 6 C -0.115 4.115 7 C -0.142 4.142 8 C -0.065 4.065 9 C -0.062 4.062 10 C -0.125 4.125 11 C 0.087 3.913 12 O -0.309 6.309 13 C -0.121 4.121 14 C -0.179 4.179 15 O -0.350 6.350 16 Si 0.797 3.203 17 H -0.169 1.169 18 H -0.191 1.191 19 H -0.187 1.187 20 C -0.163 4.163 21 C 0.068 3.932 22 F -0.118 7.118 23 C -0.141 4.141 24 C -0.115 4.115 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.158 0.842 35 H 0.136 0.864 36 H 0.171 0.829 37 H 0.273 0.727 38 H 0.143 0.857 39 H 0.239 0.761 40 H 0.169 0.831 41 H 0.148 0.852 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.360 0.783 -1.328 1.583 hybrid contribution 0.206 -0.599 -0.619 0.886 sum 0.566 0.183 -1.948 2.036 Atomic orbital electron populations 1.26312 1.21821 1.04366 1.04574 0.77171 0.65046 0.64796 0.61537 1.26251 1.06494 1.19088 1.04932 1.26276 1.06474 1.08422 1.15751 1.28107 1.02484 0.99410 1.11392 1.21315 0.96999 0.95256 0.97977 1.21420 0.99893 0.99766 0.93131 1.18728 1.01430 0.94109 0.92267 1.18836 0.96534 0.94422 0.96360 1.21549 0.96027 1.01221 0.93740 1.18139 0.91018 0.91523 0.90639 1.84754 1.16714 1.69389 1.60062 1.20627 0.96442 0.96057 0.98950 1.24860 0.95790 1.00825 0.96399 1.86515 1.31744 1.54972 1.61796 0.85351 0.76434 0.78337 0.80133 1.16920 1.19080 1.18684 1.21074 0.98217 1.01889 0.95150 1.17725 0.87088 0.94881 0.93537 1.91500 1.53249 1.87334 1.79752 1.21484 0.99889 0.93032 0.99681 1.21365 0.96923 1.00865 0.92337 0.91452 0.90599 0.91583 0.91138 0.90614 0.90849 0.91033 0.90598 0.91189 0.84226 0.86398 0.82900 0.72656 0.85702 0.76076 0.83126 0.85214 0.83839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.42 8.65 113.37 0.98 2.40 16 2 Si 1.13 -6.31 12.31 68.60 0.84 -5.47 16 3 C -0.46 2.16 8.52 113.37 0.97 3.13 16 4 C -0.46 1.97 8.52 113.37 0.97 2.94 16 5 C -0.37 0.05 4.60 22.31 0.10 0.15 16 6 C -0.10 -0.18 9.28 22.24 0.21 0.02 16 7 C -0.12 -0.61 8.86 22.48 0.20 -0.41 16 8 C -0.07 -0.35 5.31 -20.05 -0.11 -0.45 16 9 C -0.06 -0.28 5.48 -20.01 -0.11 -0.39 16 10 C -0.11 -0.19 9.46 22.58 0.21 0.02 16 11 C 0.13 0.17 6.67 22.46 0.15 0.32 16 12 O -0.50 0.10 12.81 -92.95 -1.19 -1.10 16 13 C -0.12 -0.09 5.28 -19.73 -0.10 -0.19 16 14 C -0.07 0.10 2.37 71.24 0.17 0.27 16 15 O -0.54 1.18 12.88 -148.98 -1.92 -0.74 16 16 Si 0.97 -1.22 25.48 68.60 1.75 0.53 16 17 H -0.25 0.54 6.73 99.48 0.67 1.21 16 18 H -0.27 -0.45 7.11 99.48 0.71 0.26 16 19 H -0.26 -0.35 7.11 99.48 0.71 0.36 16 20 C -0.14 -0.30 8.62 22.27 0.19 -0.11 16 21 C 0.09 0.47 7.16 22.59 0.16 0.63 16 22 F -0.14 -1.12 15.89 44.97 0.71 -0.41 16 23 C -0.12 -0.40 9.52 22.48 0.21 -0.19 16 24 C -0.10 -0.08 9.28 22.24 0.21 0.13 16 25 H 0.07 -0.16 7.96 -2.39 -0.02 -0.17 16 26 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 27 H 0.06 -0.13 7.96 -2.38 -0.02 -0.15 16 28 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 29 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 30 H 0.07 -0.37 7.67 -2.38 -0.02 -0.39 16 31 H 0.07 -0.31 7.67 -2.39 -0.02 -0.33 16 32 H 0.07 -0.36 7.96 -2.39 -0.02 -0.37 16 33 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 34 H 0.14 -0.33 7.40 -2.91 -0.02 -0.35 16 35 H 0.12 0.49 7.78 -2.91 -0.02 0.47 16 36 H 0.15 -0.11 8.05 -2.91 -0.02 -0.13 16 37 H 0.41 -3.12 9.06 -74.05 -0.67 -3.79 16 38 H 0.13 -0.16 7.82 -2.39 -0.02 -0.17 16 39 H 0.39 -3.41 8.70 -74.06 -0.64 -4.06 16 40 H 0.15 -0.08 4.87 -2.91 -0.01 -0.09 16 41 H 0.13 0.09 8.05 -2.91 -0.02 0.07 16 42 H 0.14 -0.56 7.40 -2.91 -0.02 -0.58 16 Total: 0.00 -13.52 358.10 5.06 -8.46 By element: Atomic # 1 Polarization: -10.00 SS G_CDS: 0.45 Total: -9.55 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 4.41 Total: 8.27 kcal Atomic # 8 Polarization: 1.28 SS G_CDS: -3.11 Total: -1.83 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 0.71 Total: -0.41 kcal Atomic # 14 Polarization: -7.53 SS G_CDS: 2.59 Total: -4.94 kcal Total: -13.52 5.06 -8.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_16463738.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.299 kcal (2) G-P(sol) polarization free energy of solvation -13.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds