Wall clock time and date at job start Mon Mar 8 2021 09:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86305 * 109.47211 * 2 1 4 4 C 1.86295 * 109.47384 * 239.99806 * 2 1 3 5 5 C 1.86804 * 109.47282 * 119.99776 * 2 1 3 6 6 C 1.38321 * 119.87878 * 89.99744 * 5 2 1 7 7 C 1.38013 * 120.12335 * 180.02562 * 6 5 2 8 8 C 1.39338 * 119.87525 * 0.02562 * 7 6 5 9 9 C 1.48394 * 120.11786 * 179.97438 * 8 7 6 10 10 C 1.39330 * 120.11563 * 179.97438 * 9 8 7 11 11 C 1.38047 * 119.88596 * 179.74459 * 10 9 8 12 12 C 1.38286 * 120.13108 * 0.28198 * 11 10 9 13 13 C 1.50699 * 119.88108 * 179.97438 * 12 11 10 14 14 O 1.42899 * 109.47144 * 104.65371 * 13 12 11 15 15 Si 1.86305 * 109.47042 * 344.65352 * 13 12 11 16 16 H 1.48500 * 109.47124 * 305.73197 * 15 13 12 17 17 H 1.48499 * 109.47221 * 65.73158 * 15 13 12 18 18 H 1.48503 * 109.47098 * 185.73694 * 15 13 12 19 19 C 1.38397 * 120.23683 * 359.97438 * 12 11 10 20 20 I 2.09498 * 119.94371 * 180.02562 * 19 12 11 21 21 C 1.38058 * 120.10985 * 359.97438 * 19 12 11 22 22 C 1.39337 * 119.76043 * 0.26968 * 8 7 6 23 23 C 1.38015 * 119.87574 * 359.45211 * 22 8 7 24 24 H 1.08999 * 109.46809 * 299.99855 * 1 2 3 25 25 H 1.08997 * 109.47217 * 60.00155 * 1 2 3 26 26 H 1.08996 * 109.47037 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46877 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.46681 * 299.99883 * 3 2 1 29 29 H 1.08996 * 109.46810 * 59.99635 * 3 2 1 30 30 H 1.09011 * 109.47181 * 300.00408 * 4 2 1 31 31 H 1.09005 * 109.47149 * 59.99725 * 4 2 1 32 32 H 1.08997 * 109.47541 * 180.02562 * 4 2 1 33 33 H 1.08000 * 119.93665 * 0.02562 * 6 5 2 34 34 H 1.08004 * 120.06330 * 180.02562 * 7 6 5 35 35 H 1.07993 * 120.05298 * 0.02857 * 10 9 8 36 36 H 1.07999 * 119.93064 * 180.25209 * 11 10 9 37 37 H 1.09001 * 109.47280 * 224.65499 * 13 12 11 38 38 H 0.96702 * 113.99672 * 180.02562 * 14 13 12 39 39 H 1.08001 * 120.06238 * 180.02562 * 21 19 12 40 40 H 1.08005 * 120.05840 * 179.72764 * 22 8 7 41 41 H 1.07998 * 119.94254 * 180.25116 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5210 5 6 2.4857 -0.8805 1.5253 6 6 2.7154 -2.2440 1.4883 7 6 3.1749 -2.8998 2.6124 8 6 3.4071 -2.1857 3.7861 9 6 3.9007 -2.8855 4.9981 10 6 4.1333 -2.1713 6.1716 11 6 4.5874 -2.8279 7.2978 12 6 4.8172 -4.1911 7.2613 13 6 5.3135 -4.9021 8.4939 14 8 4.2404 -5.6392 9.0831 15 14 5.9529 -3.6510 9.7174 16 1 6.9719 -2.7930 9.0612 17 1 4.8286 -2.8068 10.1955 18 1 6.5679 -4.3560 10.8707 19 6 4.5929 -4.9047 6.0969 20 53 4.9433 -6.9697 6.0522 21 6 4.1378 -4.2582 4.9652 22 6 3.1681 -0.8134 3.8196 23 6 2.7141 -0.1668 2.6880 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.5740 1.7564 0.0005 28 1 2.1207 2.2703 -0.8901 29 1 2.1206 2.2703 0.8899 30 1 2.1206 -1.9060 -1.5211 31 1 2.1207 -0.3645 -2.4111 32 1 3.5740 -0.8787 -1.5208 33 1 2.5347 -2.7965 0.5780 34 1 3.3543 -3.9644 2.5823 35 1 3.9542 -1.1068 6.2014 36 1 4.7640 -2.2758 8.2091 37 1 6.1169 -5.5860 8.2202 38 1 4.4882 -6.1227 9.8831 39 1 3.9627 -4.8159 4.0571 40 1 3.3422 -0.2560 4.7282 41 1 2.5324 0.8975 2.7115 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_16922504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:24:37 Heat of formation + Delta-G solvation = -13.193588 kcal Electronic energy + Delta-G solvation = -21140.240483 eV Core-core repulsion = 17967.222846 eV Total energy + Delta-G solvation = -3173.017637 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 412.022 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.16803 -39.61046 -37.59301 -34.25069 -33.34477 -31.91845 -30.67267 -29.50576 -29.04608 -28.44024 -28.42330 -26.50988 -24.31774 -23.41710 -22.46651 -21.28556 -18.56584 -18.48740 -17.08948 -16.90175 -16.57162 -15.86638 -15.43837 -15.00810 -14.98233 -14.72280 -14.51886 -14.36761 -14.21657 -14.04151 -13.98998 -13.79343 -13.67513 -13.47631 -13.27367 -13.23691 -13.11645 -12.94684 -12.38107 -12.23371 -12.10397 -11.92966 -11.56207 -11.40638 -11.07392 -10.91987 -10.86335 -10.74515 -10.46318 -10.34297 -9.84744 -9.82147 -9.01256 -0.48433 0.10483 0.20128 0.53511 0.70862 1.04118 1.37243 1.43034 1.69472 1.82645 1.83392 1.92826 2.44804 2.53061 3.06312 3.27410 3.53296 3.63718 3.83226 3.90178 4.02121 4.09173 4.14478 4.32356 4.43692 4.51622 4.64855 4.68389 4.69774 4.70820 4.73930 4.74482 4.74851 4.76352 4.94116 5.01442 5.10135 5.16905 5.22501 5.40184 5.45117 5.49323 5.52861 5.61189 5.67170 5.70470 6.08694 6.53475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.059 2.941 3 C -0.449 4.449 4 C -0.450 4.450 5 C -0.367 4.367 6 C -0.085 4.085 7 C -0.119 4.119 8 C -0.040 4.040 9 C -0.035 4.035 10 C -0.088 4.088 11 C -0.113 4.113 12 C -0.042 4.042 13 C -0.092 4.092 14 O -0.533 6.533 15 Si 0.943 3.057 16 H -0.246 1.246 17 H -0.244 1.244 18 H -0.252 1.252 19 C -0.074 4.074 20 I -0.027 7.027 21 C -0.077 4.077 22 C -0.118 4.118 23 C -0.086 4.086 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.136 0.864 36 H 0.131 0.869 37 H 0.080 0.920 38 H 0.381 0.619 39 H 0.135 0.865 40 H 0.123 0.877 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.663 1.975 -0.526 2.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.251 2.749 3 C -0.557 4.557 4 C -0.558 4.558 5 C -0.408 4.408 6 C -0.103 4.103 7 C -0.137 4.137 8 C -0.041 4.041 9 C -0.037 4.037 10 C -0.106 4.106 11 C -0.132 4.132 12 C -0.045 4.045 13 C -0.203 4.203 14 O -0.339 6.339 15 Si 0.764 3.236 16 H -0.169 1.169 17 H -0.168 1.168 18 H -0.176 1.176 19 C -0.214 4.214 20 I 0.123 6.877 21 C -0.098 4.098 22 C -0.136 4.136 23 C -0.104 4.104 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.154 0.846 36 H 0.149 0.851 37 H 0.097 0.903 38 H 0.229 0.771 39 H 0.153 0.847 40 H 0.141 0.859 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.915 1.347 -0.412 1.679 hybrid contribution -0.014 0.495 0.382 0.625 sum 0.901 1.842 -0.030 2.051 Atomic orbital electron populations 1.26126 1.20467 1.04601 1.04489 0.78185 0.66872 0.66124 0.63731 1.26135 1.06463 1.18557 1.04568 1.26139 1.06470 1.08064 1.15079 1.27466 1.03571 0.99491 1.10275 1.21024 0.97023 0.94619 0.97657 1.21310 0.99869 0.99754 0.92723 1.18705 0.99560 0.93440 0.92356 1.18849 0.98871 0.92645 0.93288 1.21297 0.97302 1.00418 0.91630 1.20979 0.99914 0.93356 0.98966 1.19208 0.98934 0.93251 0.93129 1.24857 0.94127 1.02487 0.98824 1.86537 1.34444 1.67246 1.45639 0.85792 0.80318 0.78940 0.78529 1.16950 1.16787 1.17551 1.24151 1.05224 0.96354 0.95692 1.96838 1.95405 0.96126 1.99302 1.21187 0.97369 0.93799 0.97430 1.21298 0.99948 0.93501 0.98888 1.21023 0.97114 0.99720 0.92532 0.91172 0.91035 0.91158 0.91049 0.90946 0.91178 0.91161 0.90947 0.91045 0.85860 0.86023 0.84580 0.85098 0.90259 0.77147 0.84689 0.85907 0.85870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.68 8.65 101.05 0.87 1.56 16 2 Si 1.06 -2.78 12.31 -169.99 -2.09 -4.87 16 3 C -0.45 0.88 8.53 101.05 0.86 1.74 16 4 C -0.45 0.84 8.52 101.05 0.86 1.70 16 5 C -0.37 0.12 4.60 -39.52 -0.18 -0.06 16 6 C -0.09 -0.02 9.28 -39.63 -0.37 -0.39 16 7 C -0.12 -0.13 9.43 -39.25 -0.37 -0.50 16 8 C -0.04 -0.07 5.88 -104.90 -0.62 -0.68 16 9 C -0.03 -0.06 5.88 -104.90 -0.62 -0.68 16 10 C -0.09 -0.08 9.43 -39.25 -0.37 -0.45 16 11 C -0.11 -0.13 8.64 -39.63 -0.34 -0.47 16 12 C -0.04 -0.08 5.30 -104.55 -0.55 -0.63 16 13 C -0.09 -0.02 1.94 36.01 0.07 0.05 16 14 O -0.53 -0.17 12.51 -35.23 -0.44 -0.61 16 15 Si 0.94 -0.50 25.30 -169.99 -4.30 -4.81 16 16 H -0.25 -0.02 7.11 56.52 0.40 0.38 16 17 H -0.24 -0.07 6.96 56.52 0.39 0.32 16 18 H -0.25 0.11 7.11 56.52 0.40 0.51 16 19 C -0.07 -0.17 6.19 -39.59 -0.25 -0.41 16 20 I -0.03 -0.05 38.10 -73.02 -2.78 -2.83 16 21 C -0.08 -0.14 9.13 -39.24 -0.36 -0.50 16 22 C -0.12 -0.09 9.43 -39.25 -0.37 -0.46 16 23 C -0.09 0.00 9.28 -39.63 -0.37 -0.37 16 24 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 25 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 26 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 27 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 28 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 29 H 0.07 -0.15 7.67 -51.93 -0.40 -0.55 16 30 H 0.07 -0.14 7.67 -51.92 -0.40 -0.54 16 31 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 32 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 33 H 0.12 -0.21 7.40 -52.49 -0.39 -0.59 16 34 H 0.12 -0.02 6.21 -52.48 -0.33 -0.35 16 35 H 0.14 -0.19 6.21 -52.49 -0.33 -0.51 16 36 H 0.13 -0.06 5.02 -52.49 -0.26 -0.32 16 37 H 0.08 -0.04 6.97 -51.93 -0.36 -0.40 16 38 H 0.38 -1.45 8.74 45.56 0.40 -1.06 16 39 H 0.14 0.09 6.21 -52.49 -0.33 -0.23 16 40 H 0.12 -0.13 6.21 -52.48 -0.33 -0.46 16 41 H 0.12 -0.24 7.40 -52.49 -0.39 -0.63 16 LS Contribution 360.95 15.07 5.44 5.44 Total: 0.00 -5.28 360.95 -11.07 -16.35 By element: Atomic # 1 Polarization: -3.33 SS G_CDS: -4.80 Total: -8.13 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -2.09 Total: -0.55 kcal Atomic # 8 Polarization: -0.17 SS G_CDS: -0.44 Total: -0.61 kcal Atomic # 14 Polarization: -3.28 SS G_CDS: -6.39 Total: -9.67 kcal Atomic # 53 Polarization: -0.05 SS G_CDS: -2.78 Total: -2.83 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -5.28 -11.07 -16.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_16922504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.161 kcal (2) G-P(sol) polarization free energy of solvation -5.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds