Wall clock time and date at job start Mon Mar 8 2021 09:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86305 * 109.47211 * 2 1 4 4 C 1.86295 * 109.47384 * 239.99806 * 2 1 3 5 5 C 1.86804 * 109.47282 * 119.99776 * 2 1 3 6 6 C 1.38321 * 119.87878 * 89.99744 * 5 2 1 7 7 C 1.38013 * 120.12335 * 180.02562 * 6 5 2 8 8 C 1.39338 * 119.87525 * 0.02562 * 7 6 5 9 9 C 1.48394 * 120.11786 * 179.97438 * 8 7 6 10 10 C 1.39330 * 120.11563 * 179.97438 * 9 8 7 11 11 C 1.38047 * 119.88596 * 179.74459 * 10 9 8 12 12 C 1.38286 * 120.13108 * 0.28198 * 11 10 9 13 13 C 1.50699 * 119.88108 * 179.97438 * 12 11 10 14 14 O 1.42899 * 109.47144 * 104.65371 * 13 12 11 15 15 Si 1.86305 * 109.47042 * 344.65352 * 13 12 11 16 16 H 1.48500 * 109.47124 * 305.73197 * 15 13 12 17 17 H 1.48499 * 109.47221 * 65.73158 * 15 13 12 18 18 H 1.48503 * 109.47098 * 185.73694 * 15 13 12 19 19 C 1.38397 * 120.23683 * 359.97438 * 12 11 10 20 20 I 2.09498 * 119.94371 * 180.02562 * 19 12 11 21 21 C 1.38058 * 120.10985 * 359.97438 * 19 12 11 22 22 C 1.39337 * 119.76043 * 0.26968 * 8 7 6 23 23 C 1.38015 * 119.87574 * 359.45211 * 22 8 7 24 24 H 1.08999 * 109.46809 * 299.99855 * 1 2 3 25 25 H 1.08997 * 109.47217 * 60.00155 * 1 2 3 26 26 H 1.08996 * 109.47037 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46877 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.46681 * 299.99883 * 3 2 1 29 29 H 1.08996 * 109.46810 * 59.99635 * 3 2 1 30 30 H 1.09011 * 109.47181 * 300.00408 * 4 2 1 31 31 H 1.09005 * 109.47149 * 59.99725 * 4 2 1 32 32 H 1.08997 * 109.47541 * 180.02562 * 4 2 1 33 33 H 1.08000 * 119.93665 * 0.02562 * 6 5 2 34 34 H 1.08004 * 120.06330 * 180.02562 * 7 6 5 35 35 H 1.07993 * 120.05298 * 0.02857 * 10 9 8 36 36 H 1.07999 * 119.93064 * 180.25209 * 11 10 9 37 37 H 1.09001 * 109.47280 * 224.65499 * 13 12 11 38 38 H 0.96702 * 113.99672 * 180.02562 * 14 13 12 39 39 H 1.08001 * 120.06238 * 180.02562 * 21 19 12 40 40 H 1.08005 * 120.05840 * 179.72764 * 22 8 7 41 41 H 1.07998 * 119.94254 * 180.25116 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5210 5 6 2.4857 -0.8805 1.5253 6 6 2.7154 -2.2440 1.4883 7 6 3.1749 -2.8998 2.6124 8 6 3.4071 -2.1857 3.7861 9 6 3.9007 -2.8855 4.9981 10 6 4.1333 -2.1713 6.1716 11 6 4.5874 -2.8279 7.2978 12 6 4.8172 -4.1911 7.2613 13 6 5.3135 -4.9021 8.4939 14 8 4.2404 -5.6392 9.0831 15 14 5.9529 -3.6510 9.7174 16 1 6.9719 -2.7930 9.0612 17 1 4.8286 -2.8068 10.1955 18 1 6.5679 -4.3560 10.8707 19 6 4.5929 -4.9047 6.0969 20 53 4.9433 -6.9697 6.0522 21 6 4.1378 -4.2582 4.9652 22 6 3.1681 -0.8134 3.8196 23 6 2.7141 -0.1668 2.6880 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.5740 1.7564 0.0005 28 1 2.1207 2.2703 -0.8901 29 1 2.1206 2.2703 0.8899 30 1 2.1206 -1.9060 -1.5211 31 1 2.1207 -0.3645 -2.4111 32 1 3.5740 -0.8787 -1.5208 33 1 2.5347 -2.7965 0.5780 34 1 3.3543 -3.9644 2.5823 35 1 3.9542 -1.1068 6.2014 36 1 4.7640 -2.2758 8.2091 37 1 6.1169 -5.5860 8.2202 38 1 4.4882 -6.1227 9.8831 39 1 3.9627 -4.8159 4.0571 40 1 3.3422 -0.2560 4.7282 41 1 2.5324 0.8975 2.7115 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_16922504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:24:37 Heat of formation + Delta-G solvation = -1.875047 kcal Electronic energy + Delta-G solvation = -21139.749674 eV Core-core repulsion = 17967.222846 eV Total energy + Delta-G solvation = -3172.526828 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 412.022 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.19911 -39.59710 -37.57824 -34.27537 -33.39763 -31.89929 -30.66486 -29.35031 -29.11979 -28.27100 -28.26186 -26.51952 -24.34064 -23.42328 -22.47880 -21.31501 -18.55114 -18.47688 -17.11478 -16.90237 -16.55783 -15.85772 -15.43281 -15.01810 -14.95440 -14.71326 -14.54066 -14.34454 -14.05762 -13.95132 -13.90193 -13.69266 -13.62820 -13.42403 -13.11888 -13.10168 -12.96137 -12.88379 -12.38704 -12.22936 -12.09909 -11.90696 -11.56807 -11.46701 -11.00750 -10.85583 -10.76759 -10.74564 -10.45591 -10.32277 -9.93136 -9.82310 -9.03853 -0.52389 0.02416 0.09446 0.53860 0.69330 1.07518 1.42153 1.47344 1.84935 1.85584 2.03846 2.07870 2.43098 2.67850 3.06343 3.28975 3.52636 3.61658 3.86117 3.90638 4.04440 4.10377 4.14571 4.31353 4.47775 4.51652 4.66240 4.70351 4.85027 4.85399 4.88972 4.89930 4.90650 4.91150 4.94791 4.99245 5.10445 5.13323 5.21148 5.41878 5.59445 5.59603 5.64576 5.67353 5.68769 5.72297 6.12303 6.76387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.127 2.873 3 C -0.461 4.461 4 C -0.463 4.463 5 C -0.378 4.378 6 C -0.098 4.098 7 C -0.135 4.135 8 C -0.058 4.058 9 C -0.043 4.043 10 C -0.091 4.091 11 C -0.121 4.121 12 C -0.057 4.057 13 C -0.096 4.096 14 O -0.548 6.548 15 Si 0.977 3.023 16 H -0.255 1.255 17 H -0.256 1.256 18 H -0.251 1.251 19 C -0.087 4.087 20 I -0.027 7.027 21 C -0.087 4.087 22 C -0.130 4.130 23 C -0.097 4.097 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.139 0.861 34 H 0.126 0.874 35 H 0.156 0.844 36 H 0.144 0.856 37 H 0.083 0.917 38 H 0.397 0.603 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.588 2.753 -0.572 2.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.314 2.686 3 C -0.568 4.568 4 C -0.570 4.570 5 C -0.417 4.417 6 C -0.115 4.115 7 C -0.153 4.153 8 C -0.058 4.058 9 C -0.045 4.045 10 C -0.109 4.109 11 C -0.140 4.140 12 C -0.060 4.060 13 C -0.206 4.206 14 O -0.357 6.357 15 Si 0.799 3.201 16 H -0.179 1.179 17 H -0.180 1.180 18 H -0.175 1.175 19 C -0.228 4.228 20 I 0.123 6.877 21 C -0.107 4.107 22 C -0.147 4.147 23 C -0.115 4.115 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.156 0.844 34 H 0.144 0.856 35 H 0.174 0.826 36 H 0.162 0.838 37 H 0.101 0.899 38 H 0.247 0.753 39 H 0.157 0.843 40 H 0.155 0.845 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.843 2.099 -0.442 2.305 hybrid contribution -0.016 0.255 0.375 0.454 sum 0.827 2.354 -0.067 2.496 Atomic orbital electron populations 1.26302 1.21761 1.04381 1.04558 0.77163 0.65073 0.64736 0.61630 1.26261 1.06432 1.19219 1.04913 1.26295 1.06415 1.08464 1.15854 1.28041 1.02831 0.99493 1.11341 1.21318 0.96979 0.95229 0.98023 1.21518 1.00352 1.00241 0.93154 1.18852 1.00394 0.94047 0.92491 1.19001 0.98996 0.92712 0.93796 1.21568 0.96691 1.01448 0.91218 1.21206 0.99826 0.93330 0.99611 1.19508 0.99007 0.93797 0.93662 1.24955 0.94052 1.02922 0.98663 1.86492 1.34864 1.67587 1.46729 0.85300 0.79206 0.77898 0.77691 1.17931 1.17962 1.17471 1.24270 1.05888 0.96500 0.96098 1.96793 1.95426 0.96201 1.99316 1.21304 0.97618 0.94157 0.97619 1.21569 0.99913 0.93379 0.99884 1.21363 0.96839 1.00827 0.92433 0.91381 0.90704 0.91541 0.91244 0.90702 0.90790 0.91014 0.90695 0.91299 0.84356 0.85635 0.82623 0.83823 0.89888 0.75258 0.84340 0.84498 0.83953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.61 8.65 113.37 0.98 2.59 16 2 Si 1.13 -6.62 12.31 68.60 0.84 -5.77 16 3 C -0.46 2.21 8.53 113.37 0.97 3.17 16 4 C -0.46 1.96 8.52 113.37 0.97 2.92 16 5 C -0.38 0.32 4.60 22.31 0.10 0.42 16 6 C -0.10 -0.08 9.28 22.24 0.21 0.12 16 7 C -0.13 -0.44 9.43 22.48 0.21 -0.22 16 8 C -0.06 -0.23 5.88 -20.04 -0.12 -0.35 16 9 C -0.04 -0.19 5.88 -20.04 -0.12 -0.31 16 10 C -0.09 -0.19 9.43 22.49 0.21 0.02 16 11 C -0.12 -0.32 8.64 22.24 0.19 -0.12 16 12 C -0.06 -0.25 5.30 -19.82 -0.10 -0.35 16 13 C -0.10 -0.08 1.94 71.24 0.14 0.06 16 14 O -0.55 -0.46 12.51 -148.98 -1.86 -2.33 16 15 Si 0.98 -1.18 25.30 68.60 1.74 0.55 16 16 H -0.26 -0.04 7.11 99.48 0.71 0.67 16 17 H -0.26 -0.12 6.96 99.48 0.69 0.58 16 18 H -0.25 0.38 7.11 99.48 0.71 1.09 16 19 C -0.09 -0.48 6.19 22.26 0.14 -0.34 16 20 I -0.03 -0.11 38.10 -18.82 -0.72 -0.83 16 21 C -0.09 -0.43 9.13 22.49 0.21 -0.22 16 22 C -0.13 -0.21 9.43 22.48 0.21 0.00 16 23 C -0.10 0.02 9.28 22.24 0.21 0.23 16 24 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 25 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 26 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 27 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 28 H 0.07 -0.37 7.96 -2.38 -0.02 -0.39 16 29 H 0.07 -0.40 7.67 -2.39 -0.02 -0.42 16 30 H 0.07 -0.32 7.67 -2.38 -0.02 -0.34 16 31 H 0.07 -0.34 7.96 -2.38 -0.02 -0.36 16 32 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 33 H 0.14 -0.45 7.40 -2.91 -0.02 -0.47 16 34 H 0.13 0.14 6.21 -2.91 -0.02 0.12 16 35 H 0.16 -0.47 6.21 -2.91 -0.02 -0.48 16 36 H 0.14 -0.12 5.02 -2.91 -0.01 -0.14 16 37 H 0.08 -0.04 6.97 -2.39 -0.02 -0.06 16 38 H 0.40 -3.04 8.74 -74.06 -0.65 -3.69 16 39 H 0.14 0.42 6.21 -2.91 -0.02 0.40 16 40 H 0.14 -0.34 6.21 -2.91 -0.02 -0.36 16 41 H 0.14 -0.69 7.40 -2.91 -0.02 -0.72 16 Total: 0.00 -12.13 360.95 5.54 -6.59 By element: Atomic # 1 Polarization: -6.98 SS G_CDS: 1.14 Total: -5.83 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 4.40 Total: 7.62 kcal Atomic # 8 Polarization: -0.46 SS G_CDS: -1.86 Total: -2.33 kcal Atomic # 14 Polarization: -7.80 SS G_CDS: 2.58 Total: -5.22 kcal Atomic # 53 Polarization: -0.11 SS G_CDS: -0.72 Total: -0.83 kcal Total: -12.13 5.54 -6.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_16922504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.716 kcal (2) G-P(sol) polarization free energy of solvation -12.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds