Wall clock time and date at job start Mon Mar 8 2021 09:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86294 * 1 3 3 C 1.86298 * 109.46970 * 2 1 4 4 C 1.86299 * 109.47326 * 239.99814 * 2 1 3 5 5 C 1.86803 * 109.47144 * 119.99635 * 2 1 3 6 6 C 1.38339 * 119.87024 * 90.00356 * 5 2 1 7 7 C 1.37989 * 120.12708 * 180.30175 * 6 5 2 8 8 C 1.39417 * 119.87125 * 359.46582 * 7 6 5 9 9 C 1.48260 * 120.12887 * 180.25747 * 8 7 6 10 10 C 1.39528 * 119.95798 * 180.27404 * 9 8 7 11 11 C 1.37629 * 120.03471 * 179.97438 * 10 9 8 12 12 C 1.39844 * 119.96029 * 0.02562 * 11 10 9 13 13 C 1.47387 * 120.03753 * 179.97438 * 12 11 10 14 14 O 1.22318 * 120.00111 * 0.02562 * 13 12 11 15 15 O 1.22321 * 120.00121 * 179.97438 * 13 12 11 16 16 C 1.39880 * 119.92855 * 359.97438 * 12 11 10 17 17 C 1.50697 * 120.02294 * 180.02562 * 16 12 11 18 18 O 1.42900 * 109.46865 * 284.99584 * 17 16 12 19 19 Si 1.86305 * 109.46985 * 164.99782 * 17 16 12 20 20 H 1.48500 * 109.46852 * 179.97438 * 19 17 16 21 21 H 1.48496 * 109.47220 * 299.99488 * 19 17 16 22 22 H 1.48493 * 109.47016 * 60.00099 * 19 17 16 23 23 C 1.37600 * 119.95684 * 359.72333 * 16 12 11 24 24 C 1.39417 * 119.74628 * 0.53136 * 8 7 6 25 25 C 1.38007 * 119.86405 * 359.72585 * 24 8 7 26 26 H 1.09002 * 109.47562 * 300.00038 * 1 2 3 27 27 H 1.08998 * 109.47082 * 60.00386 * 1 2 3 28 28 H 1.09004 * 109.47116 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47444 * 179.97438 * 3 2 1 30 30 H 1.09007 * 109.47129 * 299.99856 * 3 2 1 31 31 H 1.08998 * 109.47725 * 59.99557 * 3 2 1 32 32 H 1.09004 * 109.46947 * 300.00011 * 4 2 1 33 33 H 1.08998 * 109.47203 * 59.99874 * 4 2 1 34 34 H 1.09002 * 109.47042 * 180.02562 * 4 2 1 35 35 H 1.08002 * 119.93295 * 0.02562 * 6 5 2 36 36 H 1.07998 * 120.06616 * 179.72856 * 7 6 5 37 37 H 1.07989 * 119.98102 * 0.02562 * 10 9 8 38 38 H 1.07996 * 120.02307 * 180.02562 * 11 10 9 39 39 H 1.08999 * 109.47029 * 44.99672 * 17 16 12 40 40 H 0.96697 * 113.99900 * 180.02562 * 18 17 16 41 41 H 1.07992 * 119.97833 * 180.29622 * 23 16 12 42 42 H 1.07994 * 120.07232 * 179.74874 * 24 8 7 43 43 H 1.07994 * 119.93157 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4839 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4856 -0.8805 1.5253 6 6 2.7154 -2.2442 1.4881 7 6 3.1694 -2.9010 2.6135 8 6 3.4072 -2.1858 3.7864 9 6 3.9005 -2.8848 4.9972 10 6 4.1319 -2.1664 6.1708 11 6 4.5894 -2.8138 7.2959 12 6 4.8227 -4.1922 7.2621 13 6 5.3131 -4.8871 8.4659 14 8 5.5158 -4.2582 9.4952 15 8 5.5166 -6.0929 8.4358 16 6 4.5902 -4.9108 6.0848 17 6 4.8404 -6.3963 6.0462 18 8 6.2473 -6.6411 5.9933 19 14 4.0262 -7.1243 4.5369 20 1 4.2733 -8.5881 4.4986 21 1 2.5642 -6.8699 4.5919 22 1 4.5926 -6.4951 3.3169 23 6 4.1270 -4.2614 4.9636 24 6 3.1739 -0.8116 3.8179 25 6 2.7148 -0.1664 2.6877 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.5739 1.7565 0.0005 30 1 2.1205 2.2703 -0.8900 31 1 2.1205 2.2704 0.8899 32 1 2.1207 -1.9060 -1.5210 33 1 2.1207 -0.3645 -2.4111 34 1 3.5740 -0.8786 -1.5208 35 1 2.5347 -2.7965 0.5777 36 1 3.3442 -3.9663 2.5846 37 1 3.9512 -1.1021 6.1965 38 1 4.7680 -2.2576 8.2042 39 1 4.4247 -6.8582 6.9418 40 1 6.4826 -7.5787 5.9660 41 1 3.9428 -4.8167 4.0558 42 1 3.3525 -0.2531 4.7248 43 1 2.5341 0.8981 2.7108 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_18352972.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:24:45 Heat of formation + Delta-G solvation = -160.145448 kcal Electronic energy + Delta-G solvation = -24856.699895 eV Core-core repulsion = 21259.690209 eV Total energy + Delta-G solvation = -3597.009687 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.117 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.60335 -38.31522 -36.31329 -35.68120 -32.33632 -32.11416 -31.33850 -30.47076 -29.02708 -28.19923 -27.78054 -27.75840 -25.13795 -23.46455 -22.49709 -20.88962 -20.10836 -18.48610 -17.01834 -16.65192 -15.44213 -15.34799 -15.11707 -14.57585 -14.07914 -13.89569 -13.69106 -13.53846 -13.44583 -13.41017 -13.23818 -13.16963 -12.94750 -12.82672 -12.71459 -12.61829 -12.58966 -12.44269 -12.37454 -12.26191 -11.75882 -11.51596 -11.15982 -10.96663 -10.81372 -10.37877 -10.32536 -10.23190 -10.00979 -9.94628 -9.08796 -8.82560 -8.52880 -8.25863 -7.49650 -7.44167 -7.41872 -7.05288 0.89469 1.53994 1.99960 2.15181 2.47875 2.52189 2.55161 2.65346 2.70652 2.75255 3.23381 3.26948 3.88695 4.41151 4.87339 4.92108 5.07454 5.28654 5.31356 5.33866 5.34928 5.38076 5.40073 5.40872 5.41121 5.52630 5.57615 5.66089 5.93506 5.99175 6.03893 6.07138 6.12481 6.14763 6.16476 6.17463 6.23105 6.34131 6.54618 6.57916 6.58830 6.74864 6.86973 7.08229 7.11436 7.19899 7.46047 7.67493 8.47384 10.51288 10.94146 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.018747 B = 0.003113 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.249850 B = 8992.618343 C =10099.048457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.448 4.448 2 Si 1.057 2.943 3 C -0.447 4.447 4 C -0.448 4.448 5 C -0.384 4.384 6 C -0.085 4.085 7 C -0.131 4.131 8 C -0.012 4.012 9 C -0.068 4.068 10 C -0.118 4.118 11 C -0.088 4.088 12 C -0.101 4.101 13 C 0.520 3.480 14 O -0.690 6.690 15 O -0.663 6.663 16 C -0.045 4.045 17 C -0.055 4.055 18 O -0.526 6.526 19 Si 0.917 3.083 20 H -0.262 1.262 21 H -0.254 1.254 22 H -0.257 1.257 23 C -0.126 4.126 24 C -0.128 4.128 25 C -0.086 4.086 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.131 0.869 39 H 0.101 0.899 40 H 0.364 0.636 41 H 0.117 0.883 42 H 0.123 0.877 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.419 9.310 -22.022 25.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.555 4.555 2 Si 1.249 2.751 3 C -0.555 4.555 4 C -0.556 4.556 5 C -0.426 4.426 6 C -0.103 4.103 7 C -0.149 4.149 8 C -0.012 4.012 9 C -0.068 4.068 10 C -0.136 4.136 11 C -0.106 4.106 12 C -0.104 4.104 13 C 0.356 3.644 14 O -0.607 6.607 15 O -0.578 6.578 16 C -0.045 4.045 17 C -0.166 4.166 18 O -0.330 6.330 19 Si 0.742 3.258 20 H -0.186 1.186 21 H -0.178 1.178 22 H -0.181 1.181 23 C -0.144 4.144 24 C -0.146 4.146 25 C -0.104 4.104 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.149 0.851 39 H 0.118 0.882 40 H 0.209 0.791 41 H 0.134 0.866 42 H 0.141 0.859 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.652 9.382 -22.351 26.091 hybrid contribution 0.154 -0.321 0.244 0.431 sum -9.498 9.061 -22.107 25.711 Atomic orbital electron populations 1.26117 1.20739 1.04472 1.04165 0.78164 0.66738 0.66089 0.64112 1.26118 1.06474 1.18663 1.04251 1.26123 1.06483 1.08032 1.14918 1.27260 1.05810 0.99443 1.10067 1.20921 0.97514 0.94570 0.97336 1.21340 1.00774 0.99814 0.92952 1.18931 0.96410 0.93227 0.92671 1.18624 1.02387 0.92867 0.92891 1.21121 1.00760 0.99173 0.92536 1.21433 0.96738 0.94600 0.97820 1.22894 0.94748 0.94227 0.98512 1.16594 0.77987 0.85986 0.83879 1.90726 1.63204 1.72178 1.34585 1.90647 1.61631 1.18248 1.87299 1.19479 0.97729 0.94574 0.92748 1.24693 0.88073 0.95986 1.07846 1.86499 1.20771 1.28479 1.97216 0.86482 0.80166 0.79316 0.79866 1.18626 1.17808 1.18098 1.20952 1.02142 0.93924 0.97383 1.21339 1.00581 0.93817 0.98815 1.20931 0.97498 0.99217 0.92714 0.91193 0.91393 0.91210 0.91065 0.91298 0.91190 0.91211 0.91293 0.91064 0.86441 0.86370 0.86260 0.85089 0.88151 0.79083 0.86587 0.85935 0.86406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 -2.98 8.65 101.05 0.87 -2.10 16 2 Si 1.06 6.62 12.31 -169.99 -2.09 4.52 16 3 C -0.45 -2.82 8.52 101.05 0.86 -1.96 16 4 C -0.45 -2.88 8.52 101.05 0.86 -2.02 16 5 C -0.38 -3.98 4.60 -39.51 -0.18 -4.16 16 6 C -0.09 -1.01 9.28 -39.64 -0.37 -1.37 16 7 C -0.13 -1.91 9.43 -39.23 -0.37 -2.28 16 8 C -0.01 -0.20 5.88 -104.90 -0.62 -0.82 16 9 C -0.07 -1.29 5.88 -104.80 -0.62 -1.91 16 10 C -0.12 -2.30 9.41 -39.32 -0.37 -2.67 16 11 C -0.09 -2.07 9.58 -39.20 -0.38 -2.45 16 12 C -0.10 -2.76 5.88 -104.96 -0.62 -3.38 16 13 C 0.52 17.21 7.98 34.45 0.27 17.48 16 14 O -0.69 -24.74 17.23 -20.56 -0.35 -25.09 16 15 O -0.66 -22.49 13.49 -26.99 -0.36 -22.86 16 16 C -0.04 -1.07 5.33 -104.24 -0.56 -1.63 16 17 C -0.05 -1.21 1.73 36.00 0.06 -1.15 16 18 O -0.53 -11.83 11.81 -55.12 -0.65 -12.48 16 19 Si 0.92 15.22 25.48 -169.99 -4.33 10.89 16 20 H -0.26 -4.00 7.11 56.52 0.40 -3.59 16 21 H -0.25 -4.16 7.11 56.52 0.40 -3.76 16 22 H -0.26 -4.14 6.74 56.52 0.38 -3.75 16 23 C -0.13 -2.58 8.03 -39.32 -0.32 -2.90 16 24 C -0.13 -1.77 9.43 -39.23 -0.37 -2.14 16 25 C -0.09 -0.97 9.28 -39.63 -0.37 -1.34 16 26 H 0.07 0.48 7.96 -51.93 -0.41 0.07 16 27 H 0.07 0.38 7.96 -51.93 -0.41 -0.03 16 28 H 0.07 0.49 7.96 -51.93 -0.41 0.07 16 29 H 0.07 0.47 7.96 -51.93 -0.41 0.06 16 30 H 0.07 0.37 7.96 -51.93 -0.41 -0.04 16 31 H 0.07 0.43 7.67 -51.93 -0.40 0.03 16 32 H 0.07 0.44 7.67 -51.93 -0.40 0.04 16 33 H 0.07 0.38 7.96 -51.93 -0.41 -0.03 16 34 H 0.07 0.48 7.96 -51.93 -0.41 0.07 16 35 H 0.12 1.07 7.40 -52.49 -0.39 0.68 16 36 H 0.12 1.67 6.19 -52.49 -0.32 1.35 16 37 H 0.12 1.89 6.18 -52.49 -0.32 1.56 16 38 H 0.13 3.09 7.63 -52.49 -0.40 2.68 16 39 H 0.10 2.43 6.10 -51.93 -0.32 2.11 16 40 H 0.36 6.24 8.74 45.56 0.40 6.64 16 41 H 0.12 2.09 3.00 -52.49 -0.16 1.93 16 42 H 0.12 1.55 6.19 -52.49 -0.32 1.22 16 43 H 0.12 1.02 7.40 -52.49 -0.39 0.63 16 LS Contribution 358.58 15.07 5.40 5.40 Total: -1.00 -39.13 358.58 -9.31 -48.44 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -4.74 Total: 7.95 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -2.19 Total: -16.78 kcal Atomic # 8 Polarization: -59.05 SS G_CDS: -1.37 Total: -60.42 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -6.42 Total: 15.41 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -39.13 -9.31 -48.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_18352972.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.706 kcal (2) G-P(sol) polarization free energy of solvation -39.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds