Wall clock time and date at job start Mon Mar 8 2021 09:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86294 * 1 3 3 C 1.86298 * 109.46970 * 2 1 4 4 C 1.86299 * 109.47326 * 239.99814 * 2 1 3 5 5 C 1.86803 * 109.47144 * 119.99635 * 2 1 3 6 6 C 1.38339 * 119.87024 * 90.00356 * 5 2 1 7 7 C 1.37989 * 120.12708 * 180.30175 * 6 5 2 8 8 C 1.39417 * 119.87125 * 359.46582 * 7 6 5 9 9 C 1.48260 * 120.12887 * 180.25747 * 8 7 6 10 10 C 1.39528 * 119.95798 * 180.27404 * 9 8 7 11 11 C 1.37629 * 120.03471 * 179.97438 * 10 9 8 12 12 C 1.39844 * 119.96029 * 0.02562 * 11 10 9 13 13 C 1.47387 * 120.03753 * 179.97438 * 12 11 10 14 14 O 1.22318 * 120.00111 * 0.02562 * 13 12 11 15 15 O 1.22321 * 120.00121 * 179.97438 * 13 12 11 16 16 C 1.39880 * 119.92855 * 359.97438 * 12 11 10 17 17 C 1.50697 * 120.02294 * 180.02562 * 16 12 11 18 18 O 1.42900 * 109.46865 * 284.99584 * 17 16 12 19 19 Si 1.86305 * 109.46985 * 164.99782 * 17 16 12 20 20 H 1.48500 * 109.46852 * 179.97438 * 19 17 16 21 21 H 1.48496 * 109.47220 * 299.99488 * 19 17 16 22 22 H 1.48493 * 109.47016 * 60.00099 * 19 17 16 23 23 C 1.37600 * 119.95684 * 359.72333 * 16 12 11 24 24 C 1.39417 * 119.74628 * 0.53136 * 8 7 6 25 25 C 1.38007 * 119.86405 * 359.72585 * 24 8 7 26 26 H 1.09002 * 109.47562 * 300.00038 * 1 2 3 27 27 H 1.08998 * 109.47082 * 60.00386 * 1 2 3 28 28 H 1.09004 * 109.47116 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47444 * 179.97438 * 3 2 1 30 30 H 1.09007 * 109.47129 * 299.99856 * 3 2 1 31 31 H 1.08998 * 109.47725 * 59.99557 * 3 2 1 32 32 H 1.09004 * 109.46947 * 300.00011 * 4 2 1 33 33 H 1.08998 * 109.47203 * 59.99874 * 4 2 1 34 34 H 1.09002 * 109.47042 * 180.02562 * 4 2 1 35 35 H 1.08002 * 119.93295 * 0.02562 * 6 5 2 36 36 H 1.07998 * 120.06616 * 179.72856 * 7 6 5 37 37 H 1.07989 * 119.98102 * 0.02562 * 10 9 8 38 38 H 1.07996 * 120.02307 * 180.02562 * 11 10 9 39 39 H 1.08999 * 109.47029 * 44.99672 * 17 16 12 40 40 H 0.96697 * 113.99900 * 180.02562 * 18 17 16 41 41 H 1.07992 * 119.97833 * 180.29622 * 23 16 12 42 42 H 1.07994 * 120.07232 * 179.74874 * 24 8 7 43 43 H 1.07994 * 119.93157 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4839 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4856 -0.8805 1.5253 6 6 2.7154 -2.2442 1.4881 7 6 3.1694 -2.9010 2.6135 8 6 3.4072 -2.1858 3.7864 9 6 3.9005 -2.8848 4.9972 10 6 4.1319 -2.1664 6.1708 11 6 4.5894 -2.8138 7.2959 12 6 4.8227 -4.1922 7.2621 13 6 5.3131 -4.8871 8.4659 14 8 5.5158 -4.2582 9.4952 15 8 5.5166 -6.0929 8.4358 16 6 4.5902 -4.9108 6.0848 17 6 4.8404 -6.3963 6.0462 18 8 6.2473 -6.6411 5.9933 19 14 4.0262 -7.1243 4.5369 20 1 4.2733 -8.5881 4.4986 21 1 2.5642 -6.8699 4.5919 22 1 4.5926 -6.4951 3.3169 23 6 4.1270 -4.2614 4.9636 24 6 3.1739 -0.8116 3.8179 25 6 2.7148 -0.1664 2.6877 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.5739 1.7565 0.0005 30 1 2.1205 2.2703 -0.8900 31 1 2.1205 2.2704 0.8899 32 1 2.1207 -1.9060 -1.5210 33 1 2.1207 -0.3645 -2.4111 34 1 3.5740 -0.8786 -1.5208 35 1 2.5347 -2.7965 0.5777 36 1 3.3442 -3.9663 2.5846 37 1 3.9512 -1.1021 6.1965 38 1 4.7680 -2.2576 8.2042 39 1 4.4247 -6.8582 6.9418 40 1 6.4826 -7.5787 5.9660 41 1 3.9428 -4.8167 4.0558 42 1 3.3525 -0.2531 4.7248 43 1 2.5341 0.8981 2.7108 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_18352972.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:24:44 Heat of formation + Delta-G solvation = -183.348534 kcal Electronic energy + Delta-G solvation = -24857.706057 eV Core-core repulsion = 21259.690209 eV Total energy + Delta-G solvation = -3598.015848 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.117 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.14317 -39.83936 -38.50857 -37.36960 -34.88795 -33.56914 -32.83614 -31.70392 -29.91272 -29.18140 -28.22538 -28.18974 -26.81294 -24.98785 -23.66331 -22.23106 -21.76064 -20.48025 -18.36258 -18.28758 -17.23653 -16.90950 -16.57630 -15.90014 -15.57630 -15.50731 -15.28621 -14.94914 -14.93362 -14.71102 -14.33841 -14.21015 -14.01806 -13.99275 -13.75159 -13.64489 -13.41761 -13.29023 -13.09320 -13.01439 -12.95660 -12.87739 -12.52315 -12.11235 -12.05044 -11.72309 -11.53348 -10.96231 -10.72881 -10.67526 -10.51788 -10.33464 -10.20870 -9.99809 -9.94520 -9.77924 -9.39037 -8.90910 -0.45840 0.29208 0.58513 0.76630 1.11657 1.43216 1.47812 1.86986 1.90866 2.12014 2.15605 2.49116 2.74565 3.11300 3.46768 3.60171 3.63895 3.80795 3.94848 4.09636 4.16722 4.22101 4.32084 4.36748 4.55868 4.73867 4.79011 4.83522 4.92838 4.93124 4.96403 4.97381 4.98152 4.99296 5.00866 5.04510 5.17043 5.27138 5.32277 5.51870 5.61874 5.66514 5.66679 5.75686 5.75774 5.79330 5.92899 6.18603 6.99975 7.91575 8.32413 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.018747 B = 0.003113 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.249850 B = 8992.618343 C =10099.048457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.460 4.460 2 Si 1.129 2.871 3 C -0.459 4.459 4 C -0.460 4.460 5 C -0.383 4.383 6 C -0.093 4.093 7 C -0.140 4.140 8 C -0.054 4.054 9 C -0.040 4.040 10 C -0.114 4.114 11 C -0.093 4.093 12 C -0.165 4.165 13 C 0.501 3.499 14 O -0.739 6.739 15 O -0.690 6.690 16 C -0.053 4.053 17 C -0.105 4.105 18 O -0.556 6.556 19 Si 0.998 3.002 20 H -0.238 1.238 21 H -0.248 1.248 22 H -0.237 1.237 23 C -0.132 4.132 24 C -0.132 4.132 25 C -0.092 4.092 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.148 0.852 36 H 0.120 0.880 37 H 0.160 0.840 38 H 0.117 0.883 39 H 0.056 0.944 40 H 0.382 0.618 41 H 0.147 0.853 42 H 0.130 0.870 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.706 11.152 -27.927 32.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.567 4.567 2 Si 1.316 2.684 3 C -0.567 4.567 4 C -0.567 4.567 5 C -0.421 4.421 6 C -0.110 4.110 7 C -0.158 4.158 8 C -0.054 4.054 9 C -0.040 4.040 10 C -0.131 4.131 11 C -0.111 4.111 12 C -0.167 4.167 13 C 0.340 3.660 14 O -0.659 6.659 15 O -0.606 6.606 16 C -0.054 4.054 17 C -0.210 4.210 18 O -0.362 6.362 19 Si 0.815 3.185 20 H -0.161 1.161 21 H -0.171 1.171 22 H -0.161 1.161 23 C -0.150 4.150 24 C -0.150 4.150 25 C -0.110 4.110 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.165 0.835 36 H 0.138 0.862 37 H 0.177 0.823 38 H 0.135 0.865 39 H 0.074 0.926 40 H 0.229 0.771 41 H 0.165 0.835 42 H 0.148 0.852 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.906 11.202 -28.200 32.595 hybrid contribution 0.812 -0.728 1.973 2.255 sum -11.094 10.474 -26.226 30.341 Atomic orbital electron populations 1.26247 1.21265 1.04481 1.04666 0.77191 0.65380 0.64750 0.61125 1.26235 1.06372 1.19049 1.05017 1.26243 1.06372 1.08487 1.15638 1.28375 1.02723 0.99347 1.11635 1.21345 0.96762 0.95387 0.97526 1.21553 1.00778 1.00172 0.93303 1.18861 1.00185 0.94362 0.92027 1.19101 0.98446 0.92567 0.93855 1.21383 0.99680 1.00976 0.91103 1.21394 0.97321 0.93313 0.99057 1.22102 1.00898 0.95940 0.97794 1.17318 0.77269 0.85983 0.85411 1.90639 1.65126 1.72753 1.37356 1.90589 1.62213 1.19378 1.88406 1.19841 0.97213 0.95783 0.92514 1.25598 0.88115 0.95487 1.11802 1.86410 1.21900 1.30369 1.97535 0.85274 0.78812 0.79668 0.74793 1.16085 1.17122 1.16080 1.21201 1.01826 0.94803 0.97127 1.21579 1.00142 0.93047 1.00221 1.21370 0.96649 1.00873 0.92086 0.91470 0.90234 0.91496 0.91392 0.90232 0.90887 0.90931 0.90216 0.91405 0.83473 0.86175 0.82265 0.86459 0.92591 0.77095 0.83538 0.85204 0.83379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 -4.06 8.65 113.37 0.98 -3.08 16 2 Si 1.13 8.59 12.31 68.60 0.84 9.44 16 3 C -0.46 -3.67 8.52 113.37 0.97 -2.71 16 4 C -0.46 -3.74 8.52 113.37 0.97 -2.77 16 5 C -0.38 -6.17 4.60 22.32 0.10 -6.07 16 6 C -0.09 -1.76 9.28 22.23 0.21 -1.56 16 7 C -0.14 -3.60 9.43 22.49 0.21 -3.39 16 8 C -0.05 -1.61 5.88 -20.04 -0.12 -1.73 16 9 C -0.04 -1.47 5.88 -19.98 -0.12 -1.59 16 10 C -0.11 -4.41 9.41 22.44 0.21 -4.20 16 11 C -0.09 -4.61 9.58 22.51 0.22 -4.40 16 12 C -0.17 -9.65 5.88 -20.08 -0.12 -9.76 16 13 C 0.50 35.92 7.98 70.23 0.56 36.48 16 14 O -0.74 -57.20 17.23 17.72 0.31 -56.90 16 15 O -0.69 -50.66 13.49 23.85 0.32 -50.34 16 16 C -0.05 -2.64 5.33 -19.62 -0.10 -2.74 16 17 C -0.11 -4.82 1.73 71.23 0.12 -4.70 16 18 O -0.56 -26.29 11.81 -129.97 -1.53 -27.83 16 19 Si 1.00 30.41 25.48 68.60 1.75 32.16 16 20 H -0.24 -6.28 7.11 99.48 0.71 -5.58 16 21 H -0.25 -7.22 7.11 99.48 0.71 -6.51 16 22 H -0.24 -6.49 6.74 99.48 0.67 -5.82 16 23 C -0.13 -5.31 8.03 22.44 0.18 -5.13 16 24 C -0.13 -3.23 9.43 22.50 0.21 -3.02 16 25 C -0.09 -1.70 9.28 22.24 0.21 -1.49 16 26 H 0.07 0.65 7.96 -2.39 -0.02 0.63 16 27 H 0.08 0.54 7.96 -2.39 -0.02 0.52 16 28 H 0.07 0.65 7.96 -2.38 -0.02 0.63 16 29 H 0.07 0.62 7.96 -2.39 -0.02 0.60 16 30 H 0.08 0.50 7.96 -2.38 -0.02 0.48 16 31 H 0.07 0.56 7.67 -2.39 -0.02 0.54 16 32 H 0.07 0.57 7.67 -2.38 -0.02 0.55 16 33 H 0.08 0.51 7.96 -2.39 -0.02 0.49 16 34 H 0.07 0.62 7.96 -2.39 -0.02 0.61 16 35 H 0.15 1.89 7.40 -2.91 -0.02 1.87 16 36 H 0.12 2.94 6.19 -2.91 -0.02 2.92 16 37 H 0.16 4.76 6.18 -2.92 -0.02 4.74 16 38 H 0.12 5.97 7.63 -2.91 -0.02 5.95 16 39 H 0.06 2.95 6.10 -2.39 -0.01 2.94 16 40 H 0.38 13.81 8.74 -74.06 -0.65 13.17 16 41 H 0.15 4.89 3.00 -2.91 -0.01 4.88 16 42 H 0.13 2.87 6.19 -2.91 -0.02 2.85 16 43 H 0.15 1.81 7.40 -2.91 -0.02 1.78 16 Total: -1.00 -94.57 358.58 7.49 -87.08 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 1.12 Total: 28.23 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 4.69 Total: -21.84 kcal Atomic # 8 Polarization: -134.16 SS G_CDS: -0.91 Total: -135.07 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.59 Total: 41.59 kcal Total: -94.57 7.49 -87.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_18352972.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.271 kcal (2) G-P(sol) polarization free energy of solvation -94.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds