Wall clock time and date at job start Mon Mar 8 2021 06:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37998 * 119.93942 * 2 1 4 4 C 1.39358 * 119.88147 * 179.97438 * 3 2 1 5 5 C 1.48385 * 120.12180 * 179.97438 * 4 3 2 6 6 C 1.39319 * 120.12367 * 0.02875 * 5 4 3 7 7 C 1.38037 * 119.88032 * 179.72030 * 6 5 4 8 8 C 1.38301 * 120.11942 * 0.50945 * 7 6 5 9 9 C 1.38347 * 120.24450 * 359.48397 * 8 7 6 10 10 Si 1.86791 * 119.94209 * 180.28191 * 9 8 7 11 11 C 1.86296 * 109.47378 * 89.99848 * 10 9 8 12 12 C 1.86304 * 109.47141 * 210.00195 * 10 9 8 13 13 C 1.86303 * 109.47207 * 329.99979 * 10 9 8 14 14 C 1.37998 * 120.11778 * 0.26092 * 9 8 7 15 15 C 1.39312 * 119.75581 * 0.25330 * 4 3 2 16 16 C 1.38042 * 119.87755 * 359.49374 * 15 4 3 17 17 C 1.38305 * 120.12064 * 0.50865 * 16 15 4 18 18 C 1.50696 * 119.87765 * 179.72377 * 17 16 15 19 19 O 1.42905 * 109.47292 * 105.02027 * 18 17 16 20 20 Si 1.86301 * 109.47295 * 345.02250 * 18 17 16 21 21 H 1.48494 * 109.47272 * 60.00047 * 20 18 17 22 22 H 1.48506 * 109.46955 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46856 * 299.99851 * 20 18 17 24 24 H 1.09005 * 109.47050 * 90.00212 * 1 2 3 25 25 H 1.08996 * 109.47219 * 209.99780 * 1 2 3 26 26 H 1.08996 * 109.47680 * 330.00259 * 1 2 3 27 27 H 1.08007 * 120.05612 * 359.97438 * 3 2 1 28 28 H 1.08006 * 120.05629 * 359.96957 * 6 5 4 29 29 H 1.07998 * 119.94160 * 180.24481 * 7 6 5 30 30 H 1.08002 * 119.88158 * 179.76940 * 8 7 6 31 31 H 1.09007 * 109.47231 * 60.00378 * 11 10 9 32 32 H 1.09005 * 109.47572 * 179.97438 * 11 10 9 33 33 H 1.08995 * 109.47329 * 300.00032 * 11 10 9 34 34 H 1.09001 * 109.47051 * 60.00079 * 12 10 9 35 35 H 1.09001 * 109.46590 * 179.97438 * 12 10 9 36 36 H 1.08998 * 109.46943 * 299.99164 * 12 10 9 37 37 H 1.09002 * 109.46987 * 59.99846 * 13 10 9 38 38 H 1.08997 * 109.47427 * 180.02562 * 13 10 9 39 39 H 1.09003 * 109.46838 * 300.00129 * 13 10 9 40 40 H 1.07998 * 120.05882 * 179.97438 * 14 9 8 41 41 H 1.07998 * 120.06296 * 179.72753 * 15 4 3 42 42 H 1.08004 * 119.94348 * 180.25086 * 16 15 4 43 43 H 1.09003 * 109.47015 * 225.01936 * 18 17 16 44 44 H 0.96694 * 113.99861 * 299.99964 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1958 0.0000 4 6 3.5893 1.1944 0.0005 5 6 4.3352 2.4771 0.0000 6 6 3.6450 3.6873 -0.0005 7 6 4.3440 4.8777 0.0048 8 6 5.7270 4.8704 0.0000 9 6 6.4175 3.6716 0.0005 10 14 8.2855 3.6716 0.0019 11 6 8.9052 3.6717 1.7588 12 6 8.9071 2.1504 -0.8758 13 6 8.9071 5.1927 -0.8759 14 6 5.7288 2.4757 0.0005 15 6 4.2795 -0.0157 -0.0043 16 6 3.5805 -1.2060 0.0010 17 6 2.1974 -1.1988 0.0005 18 6 1.4399 -2.5015 0.0000 19 8 0.8980 -2.7379 1.3010 20 14 2.5946 -3.8913 -0.4537 21 1 3.6985 -3.9610 0.5371 22 1 1.8478 -5.1749 -0.4547 23 1 3.1577 -3.6456 -1.8057 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6556 2.1311 -0.0004 28 1 2.5650 3.6941 -0.0010 29 1 3.8100 5.8163 0.0084 30 1 6.2700 5.8039 0.0004 31 1 8.5416 2.7817 2.2724 32 1 9.9953 3.6713 1.7596 33 1 8.5415 4.5617 2.2723 34 1 8.5446 2.1504 -1.9038 35 1 9.9972 2.1507 -0.8754 36 1 8.5436 1.2605 -0.3622 37 1 8.5434 6.0827 -0.3624 38 1 9.9971 5.1925 -0.8755 39 1 8.5445 5.1926 -1.9039 40 1 6.2688 1.5405 0.0005 41 1 5.3594 -0.0226 -0.0083 42 1 4.1145 -2.1448 0.0014 43 1 0.6295 -2.4502 -0.7273 44 1 1.5638 -2.7954 1.9998 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17541466_11653150.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:32:46 Heat of formation + Delta-G solvation = -39.735598 kcal Electronic energy + Delta-G solvation = -21521.383941 eV Core-core repulsion = 18525.992783 eV Total energy + Delta-G solvation = -2995.391157 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.09175 -39.61578 -37.52432 -34.30248 -33.31715 -31.77924 -30.58801 -29.52206 -28.48917 -28.42740 -28.09928 -26.40899 -23.89022 -23.50561 -22.18702 -21.01195 -18.62846 -17.99391 -16.95126 -16.65294 -16.53062 -15.90721 -15.46677 -15.21369 -14.88151 -14.70438 -14.61173 -14.43749 -14.22895 -14.13587 -13.92373 -13.87025 -13.76917 -13.37277 -13.31681 -13.22802 -13.12047 -13.04781 -12.84134 -12.77000 -12.33840 -12.19562 -12.08073 -11.77224 -11.48901 -11.09637 -10.92788 -10.77553 -10.47752 -10.38790 -9.74623 -9.68439 -8.88774 -0.28283 0.41170 0.43089 0.92343 1.14760 1.40506 1.52331 1.69458 1.82927 1.90537 1.94801 2.52796 2.63278 3.15020 3.47526 3.61180 3.72402 3.81111 3.90712 4.10298 4.18080 4.34628 4.35897 4.38766 4.55357 4.61220 4.67007 4.68374 4.70211 4.72874 4.73652 4.74383 4.75746 4.77699 4.85735 4.95511 5.06740 5.10604 5.28051 5.34342 5.36978 5.42627 5.48068 5.52246 5.56533 5.61951 5.64862 5.79641 5.98192 6.13294 6.53790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.050 4.050 3 C -0.114 4.114 4 C -0.032 4.032 5 C -0.060 4.060 6 C -0.099 4.099 7 C -0.129 4.129 8 C -0.085 4.085 9 C -0.370 4.370 10 Si 1.058 2.942 11 C -0.449 4.449 12 C -0.450 4.450 13 C -0.449 4.449 14 C -0.077 4.077 15 C -0.115 4.115 16 C -0.120 4.120 17 C -0.123 4.123 18 C -0.079 4.079 19 O -0.537 6.537 20 Si 0.948 3.052 21 H -0.252 1.252 22 H -0.254 1.254 23 H -0.249 1.249 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.066 0.934 27 H 0.127 0.873 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.116 0.884 44 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.527 0.795 -0.158 1.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.050 4.050 3 C -0.132 4.132 4 C -0.033 4.033 5 C -0.060 4.060 6 C -0.117 4.117 7 C -0.147 4.147 8 C -0.103 4.103 9 C -0.411 4.411 10 Si 1.250 2.750 11 C -0.557 4.557 12 C -0.558 4.558 13 C -0.557 4.557 14 C -0.095 4.095 15 C -0.132 4.132 16 C -0.137 4.137 17 C -0.124 4.124 18 C -0.190 4.190 19 O -0.342 6.342 20 Si 0.771 3.229 21 H -0.176 1.176 22 H -0.177 1.177 23 H -0.173 1.173 24 H 0.090 0.910 25 H 0.103 0.897 26 H 0.085 0.915 27 H 0.145 0.855 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.140 0.860 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.134 0.866 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 1.449 0.122 -0.714 1.620 hybrid contribution 0.065 0.508 0.370 0.632 sum 1.514 0.630 -0.344 1.676 Atomic orbital electron populations 1.20936 0.90656 1.03937 1.02594 1.19692 0.96365 0.91815 0.97172 1.21173 0.93148 0.97889 1.00997 1.18842 0.92960 0.92228 0.99221 1.18866 0.93399 0.91851 1.01914 1.21264 0.99802 0.91864 0.98743 1.21197 0.94782 0.97824 1.00876 1.21161 0.94076 0.98046 0.97025 1.27337 1.17140 0.93946 1.02704 0.78196 0.61950 0.67386 0.67480 1.26124 1.06117 1.04644 1.18767 1.26138 1.06384 1.15010 1.08228 1.26127 1.06333 1.15013 1.08202 1.21151 0.92814 0.98263 0.97251 1.21127 0.99995 0.91344 1.00766 1.21038 0.93593 0.98421 1.00674 1.20181 0.93511 0.95554 1.03123 1.24941 1.04882 0.99812 0.89317 1.86503 1.37053 1.94496 1.16143 0.85714 0.77973 0.77916 0.81287 1.17616 1.17749 1.17290 0.91034 0.89718 0.91521 0.85544 0.85952 0.86033 0.86093 0.91181 0.91027 0.91144 0.91016 0.90897 0.91237 0.91152 0.90941 0.91042 0.85971 0.85438 0.85786 0.86575 0.77659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.01 9.32 36.00 0.34 0.32 16 2 C -0.05 -0.07 5.87 -104.67 -0.61 -0.69 16 3 C -0.11 -0.19 9.08 -39.25 -0.36 -0.54 16 4 C -0.03 -0.07 5.88 -104.90 -0.62 -0.68 16 5 C -0.06 -0.12 5.88 -104.90 -0.62 -0.74 16 6 C -0.10 -0.15 9.43 -39.25 -0.37 -0.52 16 7 C -0.13 -0.12 10.03 -39.63 -0.40 -0.52 16 8 C -0.09 -0.04 9.29 -39.52 -0.37 -0.41 16 9 C -0.37 -0.05 4.59 -39.63 -0.18 -0.23 16 10 Si 1.06 -2.46 12.31 -169.99 -2.09 -4.56 16 11 C -0.45 0.61 8.65 101.05 0.87 1.48 16 12 C -0.45 0.77 8.53 101.05 0.86 1.63 16 13 C -0.45 0.77 8.53 101.05 0.86 1.63 16 14 C -0.08 -0.08 8.67 -39.25 -0.34 -0.42 16 15 C -0.11 -0.15 9.43 -39.25 -0.37 -0.52 16 16 C -0.12 -0.11 8.64 -39.63 -0.34 -0.46 16 17 C -0.12 -0.13 5.26 -104.56 -0.55 -0.68 16 18 C -0.08 0.01 1.88 36.00 0.07 0.08 16 19 O -0.54 -0.16 11.92 -35.23 -0.42 -0.58 16 20 Si 0.95 -0.30 25.48 -169.99 -4.33 -4.63 16 21 H -0.25 0.10 6.73 56.52 0.38 0.48 16 22 H -0.25 -0.27 7.11 56.52 0.40 0.13 16 23 H -0.25 -0.14 7.11 56.52 0.40 0.26 16 24 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 25 H 0.08 0.05 6.19 -51.93 -0.32 -0.27 16 26 H 0.07 -0.03 8.08 -51.93 -0.42 -0.45 16 27 H 0.13 0.03 6.21 -52.48 -0.33 -0.30 16 28 H 0.12 0.00 6.21 -52.48 -0.33 -0.32 16 29 H 0.12 -0.10 8.06 -52.49 -0.42 -0.52 16 30 H 0.12 -0.18 7.41 -52.49 -0.39 -0.57 16 31 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 32 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 33 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 34 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 35 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 36 H 0.07 -0.13 7.68 -51.93 -0.40 -0.53 16 37 H 0.07 -0.13 7.67 -51.93 -0.40 -0.53 16 38 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 39 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 40 H 0.12 -0.09 5.57 -52.49 -0.29 -0.39 16 41 H 0.13 -0.07 6.21 -52.49 -0.33 -0.40 16 42 H 0.12 -0.07 4.87 -52.48 -0.26 -0.32 16 43 H 0.12 -0.09 7.38 -51.93 -0.38 -0.48 16 44 H 0.38 -0.99 8.70 45.56 0.40 -0.59 16 LS Contribution 353.71 15.07 5.33 5.33 Total: 0.00 -4.96 353.71 -9.63 -14.60 By element: Atomic # 1 Polarization: -2.90 SS G_CDS: -6.00 Total: -8.90 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -2.12 Total: -1.26 kcal Atomic # 8 Polarization: -0.16 SS G_CDS: -0.42 Total: -0.58 kcal Atomic # 14 Polarization: -2.76 SS G_CDS: -6.42 Total: -9.18 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -4.96 -9.63 -14.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17541466_11653150.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.138 kcal (2) G-P(sol) polarization free energy of solvation -4.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds