Wall clock time and date at job start Mon Mar 8 2021 06:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37998 * 119.93942 * 2 1 4 4 C 1.39358 * 119.88147 * 179.97438 * 3 2 1 5 5 C 1.48385 * 120.12180 * 179.97438 * 4 3 2 6 6 C 1.39319 * 120.12367 * 0.02875 * 5 4 3 7 7 C 1.38037 * 119.88032 * 179.72030 * 6 5 4 8 8 C 1.38301 * 120.11942 * 0.50945 * 7 6 5 9 9 C 1.38347 * 120.24450 * 359.48397 * 8 7 6 10 10 Si 1.86791 * 119.94209 * 180.28191 * 9 8 7 11 11 C 1.86296 * 109.47378 * 89.99848 * 10 9 8 12 12 C 1.86304 * 109.47141 * 210.00195 * 10 9 8 13 13 C 1.86303 * 109.47207 * 329.99979 * 10 9 8 14 14 C 1.37998 * 120.11778 * 0.26092 * 9 8 7 15 15 C 1.39312 * 119.75581 * 0.25330 * 4 3 2 16 16 C 1.38042 * 119.87755 * 359.49374 * 15 4 3 17 17 C 1.38305 * 120.12064 * 0.50865 * 16 15 4 18 18 C 1.50696 * 119.87765 * 179.72377 * 17 16 15 19 19 O 1.42905 * 109.47292 * 105.02027 * 18 17 16 20 20 Si 1.86301 * 109.47295 * 345.02250 * 18 17 16 21 21 H 1.48494 * 109.47272 * 60.00047 * 20 18 17 22 22 H 1.48506 * 109.46955 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46856 * 299.99851 * 20 18 17 24 24 H 1.09005 * 109.47050 * 90.00212 * 1 2 3 25 25 H 1.08996 * 109.47219 * 209.99780 * 1 2 3 26 26 H 1.08996 * 109.47680 * 330.00259 * 1 2 3 27 27 H 1.08007 * 120.05612 * 359.97438 * 3 2 1 28 28 H 1.08006 * 120.05629 * 359.96957 * 6 5 4 29 29 H 1.07998 * 119.94160 * 180.24481 * 7 6 5 30 30 H 1.08002 * 119.88158 * 179.76940 * 8 7 6 31 31 H 1.09007 * 109.47231 * 60.00378 * 11 10 9 32 32 H 1.09005 * 109.47572 * 179.97438 * 11 10 9 33 33 H 1.08995 * 109.47329 * 300.00032 * 11 10 9 34 34 H 1.09001 * 109.47051 * 60.00079 * 12 10 9 35 35 H 1.09001 * 109.46590 * 179.97438 * 12 10 9 36 36 H 1.08998 * 109.46943 * 299.99164 * 12 10 9 37 37 H 1.09002 * 109.46987 * 59.99846 * 13 10 9 38 38 H 1.08997 * 109.47427 * 180.02562 * 13 10 9 39 39 H 1.09003 * 109.46838 * 300.00129 * 13 10 9 40 40 H 1.07998 * 120.05882 * 179.97438 * 14 9 8 41 41 H 1.07998 * 120.06296 * 179.72753 * 15 4 3 42 42 H 1.08004 * 119.94348 * 180.25086 * 16 15 4 43 43 H 1.09003 * 109.47015 * 225.01936 * 18 17 16 44 44 H 0.96694 * 113.99861 * 299.99964 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1958 0.0000 4 6 3.5893 1.1944 0.0005 5 6 4.3352 2.4771 0.0000 6 6 3.6450 3.6873 -0.0005 7 6 4.3440 4.8777 0.0048 8 6 5.7270 4.8704 0.0000 9 6 6.4175 3.6716 0.0005 10 14 8.2855 3.6716 0.0019 11 6 8.9052 3.6717 1.7588 12 6 8.9071 2.1504 -0.8758 13 6 8.9071 5.1927 -0.8759 14 6 5.7288 2.4757 0.0005 15 6 4.2795 -0.0157 -0.0043 16 6 3.5805 -1.2060 0.0010 17 6 2.1974 -1.1988 0.0005 18 6 1.4399 -2.5015 0.0000 19 8 0.8980 -2.7379 1.3010 20 14 2.5946 -3.8913 -0.4537 21 1 3.6985 -3.9610 0.5371 22 1 1.8478 -5.1749 -0.4547 23 1 3.1577 -3.6456 -1.8057 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6556 2.1311 -0.0004 28 1 2.5650 3.6941 -0.0010 29 1 3.8100 5.8163 0.0084 30 1 6.2700 5.8039 0.0004 31 1 8.5416 2.7817 2.2724 32 1 9.9953 3.6713 1.7596 33 1 8.5415 4.5617 2.2723 34 1 8.5446 2.1504 -1.9038 35 1 9.9972 2.1507 -0.8754 36 1 8.5436 1.2605 -0.3622 37 1 8.5434 6.0827 -0.3624 38 1 9.9971 5.1925 -0.8755 39 1 8.5445 5.1926 -1.9039 40 1 6.2688 1.5405 0.0005 41 1 5.3594 -0.0226 -0.0083 42 1 4.1145 -2.1448 0.0014 43 1 0.6295 -2.4502 -0.7273 44 1 1.5638 -2.7954 1.9998 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17541466_11653150.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:32:45 Heat of formation + Delta-G solvation = -28.376538 kcal Electronic energy + Delta-G solvation = -21520.891375 eV Core-core repulsion = 18525.992783 eV Total energy + Delta-G solvation = -2994.898592 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.12383 -39.62194 -37.52638 -34.32829 -33.34997 -31.78144 -30.59998 -29.37631 -28.34358 -28.27988 -28.10841 -26.42177 -23.91346 -23.52538 -22.21349 -21.04532 -18.63894 -17.99445 -16.97501 -16.66500 -16.53682 -15.91782 -15.46198 -15.22929 -14.90846 -14.68189 -14.61868 -14.43812 -14.10071 -14.04994 -13.88906 -13.76374 -13.70334 -13.31769 -13.18713 -13.12934 -13.04385 -12.96992 -12.83177 -12.76308 -12.33130 -12.19016 -12.12110 -11.78198 -11.49207 -10.98645 -10.76915 -10.72871 -10.50581 -10.38242 -9.76878 -9.73052 -8.93974 -0.33758 0.34980 0.41482 0.87903 1.16571 1.42033 1.52335 1.83215 1.89688 2.01602 2.09604 2.59811 2.65875 3.11139 3.50832 3.60685 3.70674 3.80533 3.89043 4.10842 4.17671 4.32562 4.34708 4.39967 4.57544 4.61151 4.68831 4.79002 4.83244 4.83531 4.83829 4.87468 4.88238 4.89220 4.90437 4.93313 5.04567 5.09622 5.26403 5.31454 5.33832 5.50890 5.56707 5.59357 5.60007 5.66783 5.69579 5.74616 5.94173 6.13123 6.68662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.062 4.062 3 C -0.125 4.125 4 C -0.045 4.045 5 C -0.078 4.078 6 C -0.115 4.115 7 C -0.141 4.141 8 C -0.097 4.097 9 C -0.382 4.382 10 Si 1.123 2.877 11 C -0.462 4.462 12 C -0.462 4.462 13 C -0.460 4.460 14 C -0.090 4.090 15 C -0.124 4.124 16 C -0.126 4.126 17 C -0.129 4.129 18 C -0.077 4.077 19 O -0.549 6.549 20 Si 0.980 3.020 21 H -0.247 1.247 22 H -0.273 1.273 23 H -0.261 1.261 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.133 0.867 28 H 0.129 0.871 29 H 0.135 0.865 30 H 0.139 0.861 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.136 0.864 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.121 0.879 44 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.221 0.913 -0.108 2.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.062 4.062 3 C -0.143 4.143 4 C -0.046 4.046 5 C -0.078 4.078 6 C -0.133 4.133 7 C -0.159 4.159 8 C -0.115 4.115 9 C -0.421 4.421 10 Si 1.310 2.690 11 C -0.569 4.569 12 C -0.570 4.570 13 C -0.568 4.568 14 C -0.108 4.108 15 C -0.142 4.142 16 C -0.144 4.144 17 C -0.129 4.129 18 C -0.188 4.188 19 O -0.356 6.356 20 Si 0.805 3.195 21 H -0.171 1.171 22 H -0.199 1.199 23 H -0.186 1.186 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.151 0.849 28 H 0.147 0.853 29 H 0.153 0.847 30 H 0.157 0.843 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.153 0.847 41 H 0.160 0.840 42 H 0.155 0.845 43 H 0.139 0.861 44 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 2.134 0.247 -0.648 2.244 hybrid contribution -0.155 0.483 0.363 0.624 sum 1.979 0.730 -0.285 2.129 Atomic orbital electron populations 1.20924 0.89917 1.03907 1.03058 1.19905 0.97063 0.91949 0.97282 1.21341 0.93324 0.98399 1.01244 1.19016 0.93283 0.92647 0.99606 1.19069 0.94088 0.92028 1.02586 1.21460 1.00388 0.92143 0.99301 1.21470 0.95380 0.98227 1.00821 1.21501 0.94169 0.99059 0.96732 1.27938 1.18897 0.93548 1.01711 0.77229 0.59369 0.66346 0.66048 1.26283 1.06535 1.04379 1.19677 1.26276 1.06757 1.15695 1.08236 1.26252 1.06674 1.15618 1.08222 1.21429 0.92697 0.99312 0.97371 1.21371 1.00905 0.91258 1.00638 1.21242 0.93733 0.98913 1.00465 1.20361 0.93766 0.95929 1.02890 1.24982 1.05069 0.99337 0.89381 1.86473 1.38017 1.94437 1.16631 0.85255 0.77356 0.76403 0.80492 1.17133 1.19863 1.18569 0.90300 0.90151 0.91084 0.84876 0.85321 0.84730 0.84290 0.91510 0.90586 0.91383 0.91311 0.90513 0.90956 0.90837 0.90595 0.91287 0.84665 0.84012 0.84494 0.86135 0.76311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.07 9.32 71.24 0.66 0.59 16 2 C -0.06 -0.22 5.87 -19.90 -0.12 -0.33 16 3 C -0.13 -0.53 9.08 22.48 0.20 -0.33 16 4 C -0.05 -0.23 5.88 -20.05 -0.12 -0.35 16 5 C -0.08 -0.39 5.88 -20.04 -0.12 -0.51 16 6 C -0.12 -0.47 9.43 22.48 0.21 -0.26 16 7 C -0.14 -0.34 10.03 22.24 0.22 -0.11 16 8 C -0.10 -0.09 9.29 22.31 0.21 0.12 16 9 C -0.38 -0.11 4.59 22.24 0.10 -0.01 16 10 Si 1.12 -5.87 12.31 68.60 0.84 -5.03 16 11 C -0.46 1.47 8.65 113.37 0.98 2.45 16 12 C -0.46 1.84 8.53 113.37 0.97 2.81 16 13 C -0.46 1.93 8.53 113.37 0.97 2.90 16 14 C -0.09 -0.22 8.67 22.48 0.19 -0.03 16 15 C -0.12 -0.37 9.43 22.48 0.21 -0.16 16 16 C -0.13 -0.26 8.64 22.24 0.19 -0.07 16 17 C -0.13 -0.32 5.26 -19.83 -0.10 -0.42 16 18 C -0.08 0.01 1.88 71.23 0.13 0.14 16 19 O -0.55 -0.35 11.92 -148.98 -1.78 -2.13 16 20 Si 0.98 -0.61 25.48 68.60 1.75 1.13 16 21 H -0.25 0.38 6.73 99.48 0.67 1.05 16 22 H -0.27 -0.71 7.11 99.48 0.71 -0.01 16 23 H -0.26 -0.33 7.11 99.48 0.71 0.37 16 24 H 0.08 -0.09 8.14 -2.38 -0.02 -0.11 16 25 H 0.08 0.13 6.19 -2.39 -0.01 0.11 16 26 H 0.07 -0.04 8.08 -2.39 -0.02 -0.06 16 27 H 0.13 0.22 6.21 -2.91 -0.02 0.20 16 28 H 0.13 0.17 6.21 -2.91 -0.02 0.16 16 29 H 0.13 -0.18 8.06 -2.91 -0.02 -0.21 16 30 H 0.14 -0.50 7.41 -2.91 -0.02 -0.52 16 31 H 0.07 -0.16 7.96 -2.38 -0.02 -0.18 16 32 H 0.08 -0.30 7.96 -2.38 -0.02 -0.32 16 33 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 34 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 35 H 0.08 -0.35 7.96 -2.39 -0.02 -0.37 16 36 H 0.07 -0.32 7.68 -2.39 -0.02 -0.34 16 37 H 0.07 -0.34 7.67 -2.39 -0.02 -0.36 16 38 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 39 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 40 H 0.14 -0.19 5.57 -2.91 -0.02 -0.21 16 41 H 0.14 -0.15 6.21 -2.91 -0.02 -0.17 16 42 H 0.14 -0.19 4.87 -2.91 -0.01 -0.20 16 43 H 0.12 -0.17 7.38 -2.39 -0.02 -0.18 16 44 H 0.39 -2.05 8.70 -74.06 -0.64 -2.70 16 Total: 0.00 -11.35 353.71 6.69 -4.66 By element: Atomic # 1 Polarization: -6.14 SS G_CDS: 1.07 Total: -5.07 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 4.80 Total: 6.43 kcal Atomic # 8 Polarization: -0.35 SS G_CDS: -1.78 Total: -2.13 kcal Atomic # 14 Polarization: -6.49 SS G_CDS: 2.59 Total: -3.89 kcal Total: -11.35 6.69 -4.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17541466_11653150.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.717 kcal (2) G-P(sol) polarization free energy of solvation -11.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds