Wall clock time and date at job start Mon Mar 8 2021 06:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35842 * 116.99740 * 2 1 4 4 C 1.39800 * 120.12001 * 87.06426 * 3 2 1 5 5 C 1.48332 * 120.14494 * 359.97438 * 4 3 2 6 6 C 1.39347 * 120.12055 * 235.52240 * 5 4 3 7 7 C 1.38029 * 119.87392 * 179.97438 * 6 5 4 8 8 C 1.38305 * 120.12525 * 0.02562 * 7 6 5 9 9 C 1.38349 * 120.24624 * 0.02562 * 8 7 6 10 10 Si 1.86807 * 119.93585 * 179.97438 * 9 8 7 11 11 C 1.86305 * 109.46807 * 89.99910 * 10 9 8 12 12 C 1.86302 * 109.47164 * 209.99725 * 10 9 8 13 13 C 1.86293 * 109.47218 * 329.99976 * 10 9 8 14 14 C 1.37990 * 120.12891 * 0.22585 * 9 8 7 15 15 C 1.39301 * 119.70115 * 179.72133 * 4 3 2 16 16 C 1.38005 * 119.93421 * 0.27976 * 15 4 3 17 17 C 1.38382 * 120.23713 * 359.97009 * 16 15 4 18 18 C 1.38187 * 120.30697 * 0.02917 * 17 16 15 19 19 C 1.50694 * 119.97147 * 179.97438 * 18 17 16 20 20 O 1.42904 * 109.47243 * 104.99989 * 19 18 17 21 21 Si 1.86298 * 109.47302 * 345.00052 * 19 18 17 22 22 H 1.48506 * 109.47199 * 59.99560 * 21 19 18 23 23 H 1.48494 * 109.47331 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46910 * 300.00101 * 21 19 18 25 25 H 1.08999 * 109.46662 * 303.41826 * 1 2 3 26 26 H 1.08996 * 109.46965 * 63.41145 * 1 2 3 27 27 H 1.08993 * 109.47037 * 183.41563 * 1 2 3 28 28 H 1.08005 * 120.06345 * 359.95360 * 6 5 4 29 29 H 1.07997 * 119.94064 * 180.02562 * 7 6 5 30 30 H 1.07997 * 119.87852 * 179.97438 * 8 7 6 31 31 H 1.08992 * 109.47047 * 60.00339 * 11 10 9 32 32 H 1.09001 * 109.46695 * 180.02562 * 11 10 9 33 33 H 1.09001 * 109.47101 * 299.99458 * 11 10 9 34 34 H 1.09000 * 109.46637 * 59.99850 * 12 10 9 35 35 H 1.09001 * 109.46960 * 179.97438 * 12 10 9 36 36 H 1.08997 * 109.46916 * 300.00432 * 12 10 9 37 37 H 1.09005 * 109.47422 * 59.99503 * 13 10 9 38 38 H 1.09001 * 109.47534 * 179.97438 * 13 10 9 39 39 H 1.09008 * 109.47035 * 300.00140 * 13 10 9 40 40 H 1.07997 * 120.06636 * 179.74530 * 14 9 8 41 41 H 1.08005 * 120.03355 * 180.25464 * 15 4 3 42 42 H 1.08002 * 119.87910 * 180.02562 * 16 15 4 43 43 H 1.08003 * 119.85025 * 180.02562 * 17 16 15 44 44 H 1.08994 * 109.47319 * 224.99906 * 19 18 17 45 45 H 0.96704 * 113.99552 * 300.00141 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 2.3090 1.8636 1.2076 5 6 1.9157 1.2383 2.4939 6 6 1.1000 1.9300 3.3872 7 6 0.7367 1.3430 4.5825 8 6 1.1812 0.0710 4.8945 9 6 1.9921 -0.6199 4.0119 10 14 2.5881 -2.3372 4.4425 11 6 1.3640 -3.5944 3.8163 12 6 4.2466 -2.6363 3.6484 13 6 2.7478 -2.4936 6.2920 14 6 2.3658 -0.0409 2.8164 15 6 2.9470 3.1019 1.1978 16 6 3.3104 3.6798 -0.0016 17 6 3.0439 3.0333 -1.1957 18 6 2.4114 1.8046 -1.1975 19 6 2.1243 1.1075 -2.5023 20 8 3.0434 0.0273 -2.6776 21 14 2.3123 2.3168 -3.9069 22 1 3.7000 2.8453 -3.9228 23 1 2.0300 1.6298 -5.1927 24 1 1.3573 3.4393 -3.7247 25 1 -0.3632 0.5660 0.8578 26 1 -0.3633 0.4599 -0.9190 27 1 -0.3633 -1.0258 0.0612 28 1 0.7529 2.9236 3.1449 29 1 0.1042 1.8779 5.2754 30 1 0.8949 -0.3843 5.8310 31 1 1.2706 -3.5029 2.7343 32 1 1.7116 -4.5964 4.0680 33 1 0.3937 -3.4195 4.2810 34 1 4.9627 -1.9006 4.0147 35 1 4.5946 -3.6381 3.9000 36 1 4.1531 -2.5447 2.5663 37 1 1.7774 -2.3185 6.7566 38 1 3.0951 -3.4957 6.5433 39 1 3.4639 -1.7579 6.6583 40 1 3.0023 -0.5795 2.1299 41 1 3.1567 3.6093 2.1278 42 1 3.8054 4.6396 -0.0082 43 1 3.3314 3.4910 -2.1307 44 1 1.1058 0.7197 -2.4906 45 1 3.9711 0.2996 -2.6975 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17541466_11653250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:32:53 Heat of formation + Delta-G solvation = -64.924504 kcal Electronic energy + Delta-G solvation = -24580.945759 eV Core-core repulsion = 21265.780137 eV Total energy + Delta-G solvation = -3315.165622 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.45449 -39.55128 -38.27728 -37.48477 -33.76759 -31.90709 -31.58219 -30.07199 -29.43834 -28.39754 -28.35054 -27.91739 -26.52564 -24.35936 -23.24837 -22.54433 -21.50241 -19.04814 -18.01595 -17.87279 -17.16967 -16.66278 -16.49497 -15.98455 -15.77875 -15.61159 -15.51651 -14.71179 -14.63731 -14.51849 -14.39303 -14.12252 -14.04868 -13.82100 -13.62778 -13.42128 -13.31916 -13.24857 -13.16091 -13.06313 -12.96484 -12.72992 -12.56168 -12.21194 -12.04060 -11.95566 -11.62642 -11.06692 -10.95436 -10.84631 -10.78405 -10.31779 -10.12145 -9.70538 -9.65966 -9.18557 -0.07905 0.15933 0.48137 0.69712 1.12015 1.37918 1.49212 1.77467 1.88132 1.91500 2.01233 2.41140 2.61080 2.89708 3.04711 3.46269 3.62953 3.69894 3.95211 4.13568 4.20389 4.27598 4.29362 4.37777 4.41721 4.45012 4.50453 4.58943 4.70368 4.74402 4.75595 4.78210 4.80073 4.81179 4.82749 4.84255 4.88872 5.02940 5.12310 5.28979 5.38536 5.41469 5.47627 5.54476 5.59494 5.60080 5.65805 5.71875 5.72853 6.18398 6.58562 6.61342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.322 6.322 3 C 0.134 3.866 4 C -0.066 4.066 5 C -0.062 4.062 6 C -0.097 4.097 7 C -0.133 4.133 8 C -0.084 4.084 9 C -0.372 4.372 10 Si 1.058 2.942 11 C -0.448 4.448 12 C -0.450 4.450 13 C -0.449 4.449 14 C -0.054 4.054 15 C -0.089 4.089 16 C -0.117 4.117 17 C -0.115 4.115 18 C -0.138 4.138 19 C -0.072 4.072 20 O -0.529 6.529 21 Si 0.947 3.053 22 H -0.250 1.250 23 H -0.252 1.252 24 H -0.249 1.249 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.096 0.904 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.123 0.877 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.128 0.872 44 H 0.112 0.888 45 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.438 1.461 0.913 1.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.238 6.238 3 C 0.090 3.910 4 C -0.067 4.067 5 C -0.062 4.062 6 C -0.115 4.115 7 C -0.151 4.151 8 C -0.102 4.102 9 C -0.414 4.414 10 Si 1.250 2.750 11 C -0.556 4.556 12 C -0.558 4.558 13 C -0.557 4.557 14 C -0.072 4.072 15 C -0.107 4.107 16 C -0.135 4.135 17 C -0.133 4.133 18 C -0.139 4.139 19 C -0.183 4.183 20 O -0.334 6.334 21 Si 0.770 3.230 22 H -0.174 1.174 23 H -0.175 1.175 24 H -0.173 1.173 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.114 0.886 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.141 0.859 41 H 0.148 0.852 42 H 0.149 0.851 43 H 0.145 0.855 44 H 0.130 0.870 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -0.861 1.577 0.198 1.808 hybrid contribution 0.192 0.533 0.426 0.709 sum -0.669 2.110 0.624 2.300 Atomic orbital electron populations 1.22988 0.78744 1.03540 1.00491 1.86047 1.19670 1.23944 1.94126 1.18435 0.96187 0.85853 0.90493 1.19241 1.00657 0.94553 0.92211 1.18693 0.99515 0.95087 0.92900 1.21206 0.97253 0.99325 0.93754 1.21147 1.00945 0.96112 0.96916 1.21144 0.95943 0.94260 0.98810 1.27333 1.02322 1.14830 0.96888 0.78198 0.66979 0.62989 0.66868 1.26109 1.11381 1.11502 1.06569 1.26135 1.17134 1.04899 1.07597 1.26136 1.04621 1.04702 1.20205 1.21144 0.97099 0.93110 0.95874 1.21216 0.97082 0.93863 0.98585 1.21075 1.00252 1.00352 0.91802 1.21099 0.98831 0.94387 0.98974 1.20576 1.02316 0.95330 0.95674 1.24878 0.97255 0.96691 0.99436 1.86574 1.19055 1.32324 1.95411 0.85755 0.81613 0.77706 0.77964 1.17398 1.17542 1.17256 0.93490 0.93630 0.88575 0.86320 0.86191 0.86218 0.91023 0.91099 0.91266 0.91159 0.91006 0.91016 0.91214 0.90974 0.91087 0.85899 0.85186 0.85083 0.85468 0.87041 0.77968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.03 10.94 101.05 1.11 1.13 16 2 O -0.32 -0.97 8.60 -19.25 -0.17 -1.14 16 3 C 0.13 0.36 5.63 -38.87 -0.22 0.14 16 4 C -0.07 -0.15 5.42 -104.76 -0.57 -0.72 16 5 C -0.06 -0.14 5.04 -104.90 -0.53 -0.67 16 6 C -0.10 -0.14 9.61 -39.25 -0.38 -0.52 16 7 C -0.13 -0.13 10.03 -39.63 -0.40 -0.53 16 8 C -0.08 -0.06 9.29 -39.52 -0.37 -0.42 16 9 C -0.37 -0.27 4.59 -39.63 -0.18 -0.46 16 10 Si 1.06 -1.57 12.31 -169.99 -2.09 -3.66 16 11 C -0.45 0.27 8.65 101.05 0.87 1.14 16 12 C -0.45 0.21 8.52 101.05 0.86 1.07 16 13 C -0.45 0.54 8.52 101.05 0.86 1.40 16 14 C -0.05 -0.11 8.20 -39.25 -0.32 -0.43 16 15 C -0.09 -0.08 9.61 -39.27 -0.38 -0.46 16 16 C -0.12 -0.01 10.03 -39.61 -0.40 -0.40 16 17 C -0.12 -0.05 8.65 -39.55 -0.34 -0.39 16 18 C -0.14 -0.21 5.27 -104.51 -0.55 -0.76 16 19 C -0.07 -0.05 2.37 36.00 0.09 0.03 16 20 O -0.53 -0.87 12.88 -35.23 -0.45 -1.32 16 21 Si 0.95 -0.24 25.49 -169.99 -4.33 -4.57 16 22 H -0.25 0.14 6.73 56.52 0.38 0.52 16 23 H -0.25 -0.29 7.11 56.52 0.40 0.11 16 24 H -0.25 -0.06 7.11 56.52 0.40 0.34 16 25 H 0.05 0.04 8.08 -51.93 -0.42 -0.38 16 26 H 0.05 -0.02 7.32 -51.93 -0.38 -0.40 16 27 H 0.10 -0.05 8.14 -51.93 -0.42 -0.48 16 28 H 0.12 0.03 8.06 -52.48 -0.42 -0.39 16 29 H 0.12 -0.09 8.06 -52.49 -0.42 -0.51 16 30 H 0.12 -0.15 7.40 -52.49 -0.39 -0.53 16 31 H 0.07 0.00 7.96 -51.93 -0.41 -0.42 16 32 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 33 H 0.07 -0.04 7.96 -51.93 -0.41 -0.46 16 34 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 35 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 36 H 0.07 0.00 7.68 -51.93 -0.40 -0.40 16 37 H 0.07 -0.10 7.67 -51.93 -0.40 -0.50 16 38 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 39 H 0.07 -0.07 7.96 -51.92 -0.41 -0.48 16 40 H 0.12 0.25 7.40 -52.49 -0.39 -0.14 16 41 H 0.13 -0.06 8.06 -52.48 -0.42 -0.49 16 42 H 0.13 -0.28 8.06 -52.49 -0.42 -0.70 16 43 H 0.13 -0.14 4.87 -52.48 -0.26 -0.39 16 44 H 0.11 0.05 6.84 -51.93 -0.36 -0.30 16 45 H 0.37 -0.62 8.70 45.56 0.40 -0.23 16 LS Contribution 372.68 15.07 5.62 5.62 Total: 0.00 -5.34 372.68 -8.68 -14.03 By element: Atomic # 1 Polarization: -1.69 SS G_CDS: -6.41 Total: -8.11 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -0.84 Total: -0.85 kcal Atomic # 8 Polarization: -1.84 SS G_CDS: -0.62 Total: -2.46 kcal Atomic # 14 Polarization: -1.80 SS G_CDS: -6.43 Total: -8.23 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -5.34 -8.68 -14.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17541466_11653250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.898 kcal (2) G-P(sol) polarization free energy of solvation -5.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds