Wall clock time and date at job start Mon Mar 8 2021 06:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35842 * 116.99740 * 2 1 4 4 C 1.39800 * 120.12001 * 87.06426 * 3 2 1 5 5 C 1.48332 * 120.14494 * 359.97438 * 4 3 2 6 6 C 1.39347 * 120.12055 * 235.52240 * 5 4 3 7 7 C 1.38029 * 119.87392 * 179.97438 * 6 5 4 8 8 C 1.38305 * 120.12525 * 0.02562 * 7 6 5 9 9 C 1.38349 * 120.24624 * 0.02562 * 8 7 6 10 10 Si 1.86807 * 119.93585 * 179.97438 * 9 8 7 11 11 C 1.86305 * 109.46807 * 89.99910 * 10 9 8 12 12 C 1.86302 * 109.47164 * 209.99725 * 10 9 8 13 13 C 1.86293 * 109.47218 * 329.99976 * 10 9 8 14 14 C 1.37990 * 120.12891 * 0.22585 * 9 8 7 15 15 C 1.39301 * 119.70115 * 179.72133 * 4 3 2 16 16 C 1.38005 * 119.93421 * 0.27976 * 15 4 3 17 17 C 1.38382 * 120.23713 * 359.97009 * 16 15 4 18 18 C 1.38187 * 120.30697 * 0.02917 * 17 16 15 19 19 C 1.50694 * 119.97147 * 179.97438 * 18 17 16 20 20 O 1.42904 * 109.47243 * 104.99989 * 19 18 17 21 21 Si 1.86298 * 109.47302 * 345.00052 * 19 18 17 22 22 H 1.48506 * 109.47199 * 59.99560 * 21 19 18 23 23 H 1.48494 * 109.47331 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46910 * 300.00101 * 21 19 18 25 25 H 1.08999 * 109.46662 * 303.41826 * 1 2 3 26 26 H 1.08996 * 109.46965 * 63.41145 * 1 2 3 27 27 H 1.08993 * 109.47037 * 183.41563 * 1 2 3 28 28 H 1.08005 * 120.06345 * 359.95360 * 6 5 4 29 29 H 1.07997 * 119.94064 * 180.02562 * 7 6 5 30 30 H 1.07997 * 119.87852 * 179.97438 * 8 7 6 31 31 H 1.08992 * 109.47047 * 60.00339 * 11 10 9 32 32 H 1.09001 * 109.46695 * 180.02562 * 11 10 9 33 33 H 1.09001 * 109.47101 * 299.99458 * 11 10 9 34 34 H 1.09000 * 109.46637 * 59.99850 * 12 10 9 35 35 H 1.09001 * 109.46960 * 179.97438 * 12 10 9 36 36 H 1.08997 * 109.46916 * 300.00432 * 12 10 9 37 37 H 1.09005 * 109.47422 * 59.99503 * 13 10 9 38 38 H 1.09001 * 109.47534 * 179.97438 * 13 10 9 39 39 H 1.09008 * 109.47035 * 300.00140 * 13 10 9 40 40 H 1.07997 * 120.06636 * 179.74530 * 14 9 8 41 41 H 1.08005 * 120.03355 * 180.25464 * 15 4 3 42 42 H 1.08002 * 119.87910 * 180.02562 * 16 15 4 43 43 H 1.08003 * 119.85025 * 180.02562 * 17 16 15 44 44 H 1.08994 * 109.47319 * 224.99906 * 19 18 17 45 45 H 0.96704 * 113.99552 * 300.00141 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 2.3090 1.8636 1.2076 5 6 1.9157 1.2383 2.4939 6 6 1.1000 1.9300 3.3872 7 6 0.7367 1.3430 4.5825 8 6 1.1812 0.0710 4.8945 9 6 1.9921 -0.6199 4.0119 10 14 2.5881 -2.3372 4.4425 11 6 1.3640 -3.5944 3.8163 12 6 4.2466 -2.6363 3.6484 13 6 2.7478 -2.4936 6.2920 14 6 2.3658 -0.0409 2.8164 15 6 2.9470 3.1019 1.1978 16 6 3.3104 3.6798 -0.0016 17 6 3.0439 3.0333 -1.1957 18 6 2.4114 1.8046 -1.1975 19 6 2.1243 1.1075 -2.5023 20 8 3.0434 0.0273 -2.6776 21 14 2.3123 2.3168 -3.9069 22 1 3.7000 2.8453 -3.9228 23 1 2.0300 1.6298 -5.1927 24 1 1.3573 3.4393 -3.7247 25 1 -0.3632 0.5660 0.8578 26 1 -0.3633 0.4599 -0.9190 27 1 -0.3633 -1.0258 0.0612 28 1 0.7529 2.9236 3.1449 29 1 0.1042 1.8779 5.2754 30 1 0.8949 -0.3843 5.8310 31 1 1.2706 -3.5029 2.7343 32 1 1.7116 -4.5964 4.0680 33 1 0.3937 -3.4195 4.2810 34 1 4.9627 -1.9006 4.0147 35 1 4.5946 -3.6381 3.9000 36 1 4.1531 -2.5447 2.5663 37 1 1.7774 -2.3185 6.7566 38 1 3.0951 -3.4957 6.5433 39 1 3.4639 -1.7579 6.6583 40 1 3.0023 -0.5795 2.1299 41 1 3.1567 3.6093 2.1278 42 1 3.8054 4.6396 -0.0082 43 1 3.3314 3.4910 -2.1307 44 1 1.1058 0.7197 -2.4906 45 1 3.9711 0.2996 -2.6975 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17541466_11653250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:32:52 Heat of formation + Delta-G solvation = -55.049511 kcal Electronic energy + Delta-G solvation = -24580.517548 eV Core-core repulsion = 21265.780137 eV Total energy + Delta-G solvation = -3314.737410 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.51462 -39.59716 -38.36408 -37.54598 -33.81242 -31.95338 -31.62515 -30.11185 -29.38113 -28.34591 -28.28793 -27.96198 -26.57413 -24.41234 -23.29592 -22.59185 -21.55325 -19.12005 -18.07948 -17.91026 -17.23464 -16.70281 -16.57354 -15.99871 -15.83603 -15.64380 -15.57809 -14.76730 -14.64715 -14.53112 -14.41143 -14.06843 -14.01229 -13.77573 -13.63738 -13.45162 -13.32403 -13.17599 -13.14200 -13.02780 -12.94799 -12.72739 -12.61750 -12.21210 -12.06480 -11.99380 -11.64549 -11.12081 -10.94477 -10.79126 -10.77670 -10.36142 -10.17393 -9.75729 -9.71731 -9.25120 -0.13682 0.10676 0.42636 0.63336 1.11761 1.40422 1.49916 1.83476 1.87247 2.01458 2.09107 2.37507 2.66130 2.83309 2.98783 3.44819 3.59363 3.70022 3.97236 4.10612 4.19484 4.23366 4.26917 4.34313 4.38654 4.41678 4.46554 4.56439 4.67080 4.73096 4.81305 4.81845 4.85480 4.85913 4.86806 4.89495 4.90186 4.99083 5.08574 5.26236 5.34077 5.37177 5.51785 5.54722 5.59838 5.64745 5.65889 5.67159 5.70600 6.14345 6.50083 6.68943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.338 6.338 3 C 0.115 3.885 4 C -0.080 4.080 5 C -0.072 4.072 6 C -0.108 4.108 7 C -0.140 4.140 8 C -0.093 4.093 9 C -0.382 4.382 10 Si 1.116 2.884 11 C -0.460 4.460 12 C -0.464 4.464 13 C -0.454 4.454 14 C -0.072 4.072 15 C -0.096 4.096 16 C -0.115 4.115 17 C -0.119 4.119 18 C -0.146 4.146 19 C -0.079 4.079 20 O -0.548 6.548 21 Si 0.987 3.013 22 H -0.239 1.239 23 H -0.274 1.274 24 H -0.254 1.254 25 H 0.042 0.958 26 H 0.053 0.947 27 H 0.105 0.895 28 H 0.126 0.874 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.114 0.886 41 H 0.141 0.859 42 H 0.156 0.844 43 H 0.144 0.856 44 H 0.107 0.893 45 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.274 2.064 1.460 2.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.255 6.255 3 C 0.071 3.929 4 C -0.081 4.081 5 C -0.072 4.072 6 C -0.126 4.126 7 C -0.158 4.158 8 C -0.111 4.111 9 C -0.421 4.421 10 Si 1.304 2.696 11 C -0.566 4.566 12 C -0.571 4.571 13 C -0.562 4.562 14 C -0.090 4.090 15 C -0.114 4.114 16 C -0.133 4.133 17 C -0.136 4.136 18 C -0.147 4.147 19 C -0.188 4.188 20 O -0.355 6.355 21 Si 0.810 3.190 22 H -0.163 1.163 23 H -0.199 1.199 24 H -0.178 1.178 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.123 0.877 28 H 0.144 0.856 29 H 0.154 0.846 30 H 0.158 0.842 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.132 0.868 41 H 0.159 0.841 42 H 0.174 0.826 43 H 0.162 0.838 44 H 0.125 0.875 45 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -0.685 2.191 0.745 2.413 hybrid contribution 0.134 0.327 0.249 0.432 sum -0.551 2.519 0.993 2.763 Atomic orbital electron populations 1.23086 0.78062 1.04182 1.00712 1.86011 1.20568 1.24618 1.94260 1.18658 0.96979 0.86061 0.91190 1.19408 1.01255 0.95234 0.92166 1.18838 0.99853 0.95347 0.93198 1.21357 0.97433 0.99796 0.94038 1.21433 1.00933 0.96465 0.96973 1.21462 0.95754 0.94317 0.99583 1.27823 1.01963 1.16028 0.96328 0.77332 0.65191 0.60846 0.66269 1.26249 1.11983 1.12304 1.06097 1.26319 1.18354 1.05141 1.07268 1.26180 1.05047 1.04979 1.20027 1.21203 0.97803 0.93421 0.96528 1.21418 0.96900 0.93512 0.99544 1.21388 0.99557 1.01109 0.91242 1.21333 0.98396 0.93982 0.99933 1.20720 1.02539 0.95855 0.95553 1.25066 0.96969 0.96876 0.99928 1.86531 1.20179 1.33308 1.95453 0.85185 0.81789 0.76402 0.75657 1.16277 1.19886 1.17792 0.93920 0.92801 0.87665 0.85596 0.84597 0.84194 0.91895 0.90607 0.91061 0.91420 0.90515 0.91869 0.90537 0.90543 0.91141 0.86784 0.84136 0.82624 0.83828 0.87526 0.76546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.10 10.94 113.37 1.24 1.34 16 2 O -0.34 -2.70 8.60 -91.78 -0.79 -3.49 16 3 C 0.11 0.78 5.63 22.73 0.13 0.91 16 4 C -0.08 -0.47 5.42 -19.96 -0.11 -0.57 16 5 C -0.07 -0.43 5.04 -20.05 -0.10 -0.53 16 6 C -0.11 -0.41 9.61 22.49 0.22 -0.20 16 7 C -0.14 -0.29 10.03 22.24 0.22 -0.07 16 8 C -0.09 -0.12 9.29 22.31 0.21 0.08 16 9 C -0.38 -0.82 4.59 22.24 0.10 -0.72 16 10 Si 1.12 -3.09 12.31 68.60 0.84 -2.24 16 11 C -0.46 0.42 8.65 113.37 0.98 1.41 16 12 C -0.46 0.04 8.52 113.37 0.97 1.01 16 13 C -0.45 1.47 8.52 113.37 0.97 2.44 16 14 C -0.07 -0.41 8.20 22.49 0.18 -0.23 16 15 C -0.10 -0.21 9.61 22.47 0.22 0.01 16 16 C -0.12 0.05 10.03 22.25 0.22 0.27 16 17 C -0.12 -0.07 8.65 22.29 0.19 0.12 16 18 C -0.15 -0.56 5.27 -19.79 -0.10 -0.66 16 19 C -0.08 -0.18 2.37 71.23 0.17 -0.01 16 20 O -0.55 -2.37 12.88 -148.98 -1.92 -4.29 16 21 Si 0.99 -0.64 25.49 68.60 1.75 1.11 16 22 H -0.24 0.60 6.73 99.48 0.67 1.27 16 23 H -0.27 -0.78 7.11 99.48 0.71 -0.07 16 24 H -0.25 -0.02 7.11 99.48 0.71 0.69 16 25 H 0.04 0.15 8.08 -2.39 -0.02 0.13 16 26 H 0.05 0.04 7.32 -2.39 -0.02 0.03 16 27 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 28 H 0.13 0.17 8.06 -2.91 -0.02 0.14 16 29 H 0.14 -0.26 8.06 -2.91 -0.02 -0.28 16 30 H 0.14 -0.48 7.40 -2.91 -0.02 -0.50 16 31 H 0.06 0.06 7.96 -2.39 -0.02 0.04 16 32 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 33 H 0.07 -0.09 7.96 -2.39 -0.02 -0.11 16 34 H 0.07 0.02 7.96 -2.39 -0.02 0.01 16 35 H 0.08 -0.10 7.96 -2.39 -0.02 -0.12 16 36 H 0.06 0.10 7.68 -2.39 -0.02 0.08 16 37 H 0.08 -0.33 7.67 -2.38 -0.02 -0.35 16 38 H 0.08 -0.28 7.96 -2.39 -0.02 -0.30 16 39 H 0.07 -0.19 7.96 -2.38 -0.02 -0.21 16 40 H 0.11 0.76 7.40 -2.91 -0.02 0.73 16 41 H 0.14 -0.11 8.06 -2.91 -0.02 -0.13 16 42 H 0.16 -0.91 8.06 -2.91 -0.02 -0.93 16 43 H 0.14 -0.47 4.87 -2.91 -0.01 -0.49 16 44 H 0.11 0.26 6.84 -2.39 -0.02 0.24 16 45 H 0.39 -0.99 8.70 -74.05 -0.64 -1.63 16 Total: 0.00 -12.85 372.68 6.63 -6.22 By element: Atomic # 1 Polarization: -2.94 SS G_CDS: 1.05 Total: -1.89 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 5.70 Total: 4.59 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -2.71 Total: -7.78 kcal Atomic # 14 Polarization: -3.73 SS G_CDS: 2.59 Total: -1.14 kcal Total: -12.85 6.63 -6.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17541466_11653250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.832 kcal (2) G-P(sol) polarization free energy of solvation -12.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds