Wall clock time and date at job start Mon Mar 8 2021 06:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86292 * 1 3 3 C 1.86302 * 109.47142 * 2 1 4 4 C 1.86298 * 109.47325 * 240.00019 * 2 1 3 5 5 C 1.86800 * 109.47115 * 119.99813 * 2 1 3 6 6 C 1.38306 * 119.93913 * 269.98101 * 5 2 1 7 7 C 1.38344 * 120.24827 * 179.97438 * 6 5 2 8 8 C 1.37996 * 120.12612 * 359.79306 * 7 6 5 9 9 C 1.39385 * 119.87340 * 0.48037 * 8 7 6 10 10 C 1.48328 * 120.12578 * 179.77390 * 9 8 7 11 11 C 1.39335 * 120.09671 * 129.72385 * 10 9 8 12 12 C 1.38006 * 119.97394 * 180.02562 * 11 10 9 13 13 C 1.50707 * 119.86973 * 180.02562 * 12 11 10 14 14 O 1.42903 * 109.46442 * 65.00228 * 13 12 11 15 15 Si 1.86293 * 109.47256 * 184.99795 * 13 12 11 16 16 H 1.48499 * 109.47512 * 300.00264 * 15 13 12 17 17 H 1.48505 * 109.47075 * 60.00390 * 15 13 12 18 18 H 1.48499 * 109.47038 * 180.02562 * 15 13 12 19 19 C 1.38280 * 120.26083 * 0.31539 * 12 11 10 20 20 C 1.38780 * 120.32527 * 359.47446 * 19 12 11 21 21 C 1.38803 * 119.89441 * 0.40182 * 20 19 12 22 22 O 1.36025 * 120.85414 * 180.17009 * 21 20 19 23 23 C 1.43176 * 116.72838 * 342.76102 * 22 21 20 24 24 C 1.53478 * 108.23396 * 46.11881 * 23 22 21 25 25 O 1.36129 * 119.34676 * 180.09106 * 20 19 12 26 26 C 1.38034 * 119.93793 * 90.00197 * 5 2 1 27 27 H 1.09003 * 109.47661 * 300.00205 * 1 2 3 28 28 H 1.09007 * 109.47392 * 60.00432 * 1 2 3 29 29 H 1.09005 * 109.47428 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47281 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47266 * 300.00056 * 3 2 1 32 32 H 1.09006 * 109.46903 * 59.99904 * 3 2 1 33 33 H 1.09004 * 109.47195 * 299.99647 * 4 2 1 34 34 H 1.09000 * 109.46918 * 60.00045 * 4 2 1 35 35 H 1.09004 * 109.47251 * 179.97438 * 4 2 1 36 36 H 1.07996 * 119.87341 * 0.02562 * 6 5 2 37 37 H 1.07999 * 119.94029 * 180.02562 * 7 6 5 38 38 H 1.08001 * 120.06674 * 180.22928 * 8 7 6 39 39 H 1.07994 * 120.01016 * 0.05671 * 11 10 9 40 40 H 1.08999 * 109.47345 * 305.00298 * 13 12 11 41 41 H 0.96700 * 114.00311 * 60.00230 * 14 13 12 42 42 H 1.08005 * 119.83842 * 179.70918 * 19 12 11 43 43 H 1.08997 * 109.70560 * 286.43516 * 23 22 21 44 44 H 1.09001 * 109.71147 * 165.80069 * 23 22 21 45 45 H 1.08998 * 109.70734 * 180.65670 * 24 23 22 46 46 H 1.08996 * 109.71497 * 60.02474 * 24 23 22 47 47 H 1.08005 * 120.06300 * 359.97309 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4856 -0.8805 1.5252 6 6 2.7160 -0.1679 2.6879 7 6 3.1767 -0.8136 3.8214 8 6 3.4047 -2.1744 3.7988 9 6 3.1797 -2.8968 2.6282 10 6 3.4278 -4.3588 2.5962 11 6 2.4506 -5.2228 2.1062 12 6 2.6839 -6.5827 2.0781 13 6 1.6255 -7.5150 1.5471 14 8 1.4217 -7.2608 0.1557 15 14 2.1772 -9.2788 1.7819 16 1 3.4478 -9.5022 1.0465 17 1 2.3891 -9.5429 3.2278 18 1 1.1346 -10.1974 1.2581 19 6 3.8826 -7.0937 2.5408 20 6 4.8656 -6.2435 3.0273 21 6 4.6426 -4.8739 3.0578 22 8 5.5938 -4.0224 3.5274 23 6 6.6387 -4.5978 4.3193 24 6 7.1398 -5.8620 3.6078 25 8 6.0389 -6.7680 3.4761 26 6 2.7152 -2.2412 1.4897 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 3.5739 1.7565 0.0005 31 1 2.1206 2.2703 -0.8900 32 1 2.1205 2.2703 0.8900 33 1 2.1207 -1.9059 -1.5211 34 1 2.1206 -0.3643 -2.4111 35 1 3.5740 -0.8778 -1.5213 36 1 2.5349 0.8965 2.7113 37 1 3.3546 -0.2523 4.7268 38 1 3.7608 -2.6782 4.6853 39 1 1.5112 -4.8283 1.7481 40 1 0.6929 -7.3510 2.0869 41 1 2.2118 -7.3873 -0.3871 42 1 4.0561 -8.1596 2.5200 43 1 6.2520 -4.8590 5.3043 44 1 7.4570 -3.8850 4.4221 45 1 7.9300 -6.3269 4.1975 46 1 7.5218 -5.6015 2.6208 47 1 2.5349 -2.7967 0.5812 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17541466_12419810.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:44:35 Heat of formation + Delta-G solvation = -91.191267 kcal Electronic energy + Delta-G solvation = -28080.350685 eV Core-core repulsion = 24317.137718 eV Total energy + Delta-G solvation = -3763.212967 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.44917 -40.14362 -39.34054 -38.29078 -37.21566 -33.66425 -32.49404 -31.66169 -30.26119 -29.84959 -29.34031 -28.25668 -28.24617 -26.93455 -25.23428 -24.61675 -23.15148 -21.94938 -21.45128 -19.72172 -18.78103 -18.49291 -17.74172 -17.38005 -16.61430 -16.38319 -16.11722 -16.04975 -15.76655 -15.66292 -15.40596 -15.26576 -15.04935 -14.43358 -14.40407 -14.13890 -14.03039 -13.99647 -13.72890 -13.66629 -13.35754 -13.18225 -13.10398 -13.06662 -12.94826 -12.74400 -12.41791 -12.25244 -12.15812 -12.10949 -12.06095 -11.76434 -11.51948 -10.92032 -10.76374 -10.74266 -10.42263 -10.14754 -9.70144 -9.26384 -9.10724 -0.24373 0.11526 0.44961 0.63799 1.15540 1.43411 1.51553 1.85899 1.89098 1.91831 2.04382 2.11827 2.17253 2.44433 2.68781 2.97663 3.12412 3.43548 3.53529 3.70482 3.81730 3.85396 3.97582 4.09438 4.11343 4.16698 4.24841 4.40131 4.47319 4.50750 4.55380 4.65523 4.72690 4.81630 4.86198 4.86483 4.89248 4.90436 4.91038 4.91577 4.93244 5.03884 5.18719 5.30794 5.42774 5.55592 5.58737 5.61722 5.65199 5.69760 5.71808 5.80604 6.14823 6.27582 6.69564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.122 2.878 3 C -0.459 4.459 4 C -0.463 4.463 5 C -0.382 4.382 6 C -0.093 4.093 7 C -0.142 4.142 8 C -0.095 4.095 9 C -0.068 4.068 10 C -0.051 4.051 11 C -0.078 4.078 12 C -0.110 4.110 13 C -0.069 4.069 14 O -0.546 6.546 15 Si 0.975 3.025 16 H -0.255 1.255 17 H -0.262 1.262 18 H -0.267 1.267 19 C -0.130 4.130 20 C 0.044 3.956 21 C 0.056 3.944 22 O -0.312 6.312 23 C 0.013 3.987 24 C 0.015 3.985 25 O -0.322 6.322 26 C -0.083 4.083 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.140 0.860 37 H 0.132 0.868 38 H 0.112 0.888 39 H 0.148 0.852 40 H 0.132 0.868 41 H 0.389 0.611 42 H 0.138 0.862 43 H 0.080 0.920 44 H 0.149 0.851 45 H 0.152 0.848 46 H 0.080 0.920 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.738 1.640 -0.058 2.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.567 4.567 2 Si 1.310 2.690 3 C -0.567 4.567 4 C -0.570 4.570 5 C -0.421 4.421 6 C -0.111 4.111 7 C -0.160 4.160 8 C -0.113 4.113 9 C -0.068 4.068 10 C -0.051 4.051 11 C -0.096 4.096 12 C -0.111 4.111 13 C -0.180 4.180 14 O -0.353 6.353 15 Si 0.800 3.200 16 H -0.179 1.179 17 H -0.186 1.186 18 H -0.192 1.192 19 C -0.148 4.148 20 C -0.001 4.001 21 C 0.010 3.990 22 O -0.226 6.226 23 C -0.062 4.062 24 C -0.059 4.059 25 O -0.237 6.237 26 C -0.101 4.101 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.158 0.842 37 H 0.150 0.850 38 H 0.130 0.870 39 H 0.166 0.834 40 H 0.150 0.850 41 H 0.238 0.762 42 H 0.156 0.844 43 H 0.099 0.901 44 H 0.167 0.833 45 H 0.170 0.830 46 H 0.098 0.902 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.509 0.873 0.360 1.780 hybrid contribution 1.001 0.042 0.379 1.072 sum 2.510 0.915 0.740 2.772 Atomic orbital electron populations 1.26257 1.21314 1.04500 1.04647 0.77240 0.65458 0.64812 0.61531 1.26238 1.06359 1.19075 1.04986 1.26297 1.06247 1.08456 1.16021 1.27912 1.03822 0.98893 1.11478 1.21462 0.96383 1.00714 0.92556 1.21408 1.00663 0.94278 0.99684 1.21200 0.98427 0.94592 0.97064 1.18756 1.01970 0.90880 0.95217 1.18368 0.91041 0.93494 1.02242 1.21010 0.98822 0.91616 0.98112 1.20053 0.94933 0.95110 1.00980 1.24906 1.01285 1.06843 0.84920 1.86495 1.40112 1.92571 1.16165 0.85325 0.79393 0.74842 0.80489 1.17879 1.18604 1.19207 1.20513 0.93031 0.99812 1.01426 1.18799 0.88584 0.90877 1.01815 1.18987 0.90694 0.88048 1.01227 1.86353 1.35466 1.34341 1.66486 1.23959 0.90844 0.97637 0.93746 1.23947 0.87977 0.90892 1.03100 1.86307 1.18020 1.37617 1.81780 1.21348 0.96755 0.95140 0.96874 0.91247 0.90602 0.91425 0.91346 0.90560 0.90728 0.91138 0.90514 0.91555 0.84193 0.84967 0.86983 0.83398 0.85000 0.76175 0.84412 0.90130 0.83299 0.83012 0.90185 0.85118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.18 8.65 113.37 0.98 2.16 16 2 Si 1.12 -4.69 12.31 68.60 0.84 -3.84 16 3 C -0.46 1.62 8.53 113.37 0.97 2.59 16 4 C -0.46 1.09 8.53 113.37 0.97 2.05 16 5 C -0.38 -0.56 4.59 22.24 0.10 -0.46 16 6 C -0.09 -0.18 9.29 22.31 0.21 0.02 16 7 C -0.14 -0.57 10.03 22.24 0.22 -0.35 16 8 C -0.09 -0.64 8.76 22.49 0.20 -0.44 16 9 C -0.07 -0.48 5.25 -20.05 -0.11 -0.59 16 10 C -0.05 -0.36 5.49 -19.95 -0.11 -0.47 16 11 C -0.08 -0.33 9.13 22.48 0.21 -0.13 16 12 C -0.11 -0.33 5.35 -19.91 -0.11 -0.44 16 13 C -0.07 0.03 2.80 71.24 0.20 0.23 16 14 O -0.55 -0.05 12.83 -148.98 -1.91 -1.96 16 15 Si 0.97 0.12 25.12 68.60 1.72 1.84 16 16 H -0.25 -0.16 7.04 99.48 0.70 0.54 16 17 H -0.26 -0.55 7.11 99.48 0.71 0.15 16 18 H -0.27 -0.69 7.11 99.48 0.71 0.02 16 19 C -0.13 -0.67 8.58 22.41 0.19 -0.47 16 20 C 0.04 0.33 6.49 22.53 0.15 0.47 16 21 C 0.06 0.44 6.41 22.78 0.15 0.58 16 22 O -0.31 -1.95 8.71 -81.54 -0.71 -2.67 16 23 C 0.01 -0.02 7.26 72.14 0.52 0.51 16 24 C 0.02 -0.03 7.26 72.14 0.52 0.50 16 25 O -0.32 -1.87 10.42 -82.72 -0.86 -2.74 16 26 C -0.08 -0.35 8.75 22.49 0.20 -0.15 16 27 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 28 H 0.07 -0.26 7.96 -2.38 -0.02 -0.27 16 29 H 0.07 -0.11 7.96 -2.38 -0.02 -0.13 16 30 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 31 H 0.08 -0.31 7.96 -2.39 -0.02 -0.33 16 32 H 0.07 -0.32 7.67 -2.38 -0.02 -0.34 16 33 H 0.07 -0.15 7.68 -2.38 -0.02 -0.17 16 34 H 0.08 -0.25 7.96 -2.39 -0.02 -0.27 16 35 H 0.07 -0.09 7.96 -2.39 -0.02 -0.10 16 36 H 0.14 -0.40 7.40 -2.91 -0.02 -0.42 16 37 H 0.13 0.05 8.06 -2.91 -0.02 0.02 16 38 H 0.11 0.74 7.69 -2.91 -0.02 0.72 16 39 H 0.15 0.28 8.04 -2.91 -0.02 0.26 16 40 H 0.13 -0.36 7.96 -2.39 -0.02 -0.38 16 41 H 0.39 -2.29 8.70 -74.06 -0.64 -2.93 16 42 H 0.14 0.44 4.83 -2.91 -0.01 0.42 16 43 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 44 H 0.15 -1.08 8.14 -2.39 -0.02 -1.10 16 45 H 0.15 -1.20 8.14 -2.39 -0.02 -1.22 16 46 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 47 H 0.13 0.17 7.40 -2.91 -0.02 0.15 16 Total: 0.00 -15.48 385.54 5.62 -9.86 By element: Atomic # 1 Polarization: -7.18 SS G_CDS: 1.08 Total: -6.10 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 5.46 Total: 5.60 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: -3.48 Total: -7.36 kcal Atomic # 14 Polarization: -4.57 SS G_CDS: 2.57 Total: -2.00 kcal Total: -15.48 5.62 -9.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17541466_12419810.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.328 kcal (2) G-P(sol) polarization free energy of solvation -15.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds