Wall clock time and date at job start Mon Mar 8 2021 06:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86302 * 109.47369 * 2 1 4 4 C 1.86303 * 109.47190 * 239.99737 * 2 1 3 5 5 C 1.86794 * 109.46915 * 119.99758 * 2 1 3 6 6 C 1.38301 * 119.94147 * 269.97597 * 5 2 1 7 7 C 1.38340 * 120.24534 * 179.97438 * 6 5 2 8 8 C 1.37999 * 120.12561 * 359.77220 * 7 6 5 9 9 C 1.39367 * 119.87026 * 0.50309 * 8 7 6 10 10 C 1.48390 * 120.11898 * 179.74750 * 9 8 7 11 11 C 1.39309 * 120.12365 * 123.11822 * 10 9 8 12 12 C 1.38043 * 119.87969 * 179.97438 * 11 10 9 13 13 C 1.38297 * 120.11900 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.87782 * 180.02562 * 13 12 11 15 15 F 1.39908 * 109.47041 * 0.02562 * 14 13 12 16 16 F 1.39898 * 109.47275 * 119.99905 * 14 13 12 17 17 F 1.39895 * 109.47184 * 240.00432 * 14 13 12 18 18 C 1.38339 * 120.24530 * 0.04826 * 13 12 11 19 19 C 1.38000 * 120.12448 * 359.94804 * 18 13 12 20 20 C 1.50694 * 120.06327 * 180.29747 * 19 18 13 21 21 O 1.42904 * 109.46901 * 105.13150 * 20 19 18 22 22 Si 1.86292 * 109.47265 * 345.12932 * 20 19 18 23 23 H 1.48507 * 109.47234 * 59.99892 * 22 20 19 24 24 H 1.48499 * 109.47114 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47374 * 300.00111 * 22 20 19 26 26 C 1.38048 * 119.94044 * 90.00002 * 5 2 1 27 27 H 1.08999 * 109.47006 * 300.00440 * 1 2 3 28 28 H 1.09010 * 109.46889 * 59.99766 * 1 2 3 29 29 H 1.08990 * 109.47282 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46804 * 180.02562 * 3 2 1 31 31 H 1.09009 * 109.46786 * 299.99901 * 3 2 1 32 32 H 1.08996 * 109.47020 * 59.99169 * 3 2 1 33 33 H 1.09003 * 109.46751 * 300.00238 * 4 2 1 34 34 H 1.08995 * 109.47079 * 60.00007 * 4 2 1 35 35 H 1.08999 * 109.47111 * 180.02562 * 4 2 1 36 36 H 1.08001 * 119.87917 * 0.02562 * 6 5 2 37 37 H 1.08004 * 119.93985 * 180.02562 * 7 6 5 38 38 H 1.07993 * 120.06821 * 180.28056 * 8 7 6 39 39 H 1.08008 * 120.06165 * 0.02562 * 11 10 9 40 40 H 1.07998 * 119.93734 * 180.02562 * 12 11 10 41 41 H 1.07997 * 119.93840 * 179.97438 * 18 13 12 42 42 H 1.09003 * 109.47067 * 225.12408 * 20 19 18 43 43 H 0.96702 * 113.99966 * 59.99980 * 21 20 19 44 44 H 1.07999 * 120.05917 * 359.95483 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4856 -0.8805 1.5252 6 6 2.7161 -0.1679 2.6879 7 6 3.1767 -0.8137 3.8213 8 6 3.4042 -2.1747 3.7987 9 6 3.1791 -2.8967 2.6282 10 6 3.4273 -4.3594 2.5961 11 6 2.4045 -5.2344 2.2369 12 6 2.6410 -6.5941 2.2083 13 6 3.8908 -7.0880 2.5349 14 6 4.1432 -8.5734 2.5013 15 9 2.9737 -9.2365 2.1142 16 9 5.1623 -8.8526 1.5845 17 9 4.5279 -9.0099 3.7735 18 6 4.9100 -6.2238 2.8928 19 6 4.6846 -4.8627 2.9247 20 6 5.7977 -3.9220 3.3083 21 8 6.2884 -3.2628 2.1392 22 14 7.1791 -4.8861 4.1037 23 1 7.6935 -5.8967 3.1448 24 1 8.2762 -3.9591 4.4811 25 1 6.6692 -5.5710 5.3185 26 6 2.7152 -2.2413 1.4897 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 3.5741 1.7563 -0.0005 31 1 2.1207 2.2703 -0.8901 32 1 2.1207 2.2703 0.8899 33 1 2.1206 -1.9060 -1.5210 34 1 2.1207 -0.3645 -2.4111 35 1 3.5740 -0.8787 -1.5209 36 1 2.5352 0.8966 2.7113 37 1 3.3547 -0.2525 4.7267 38 1 3.7595 -2.6786 4.6853 39 1 1.4284 -4.8495 1.9804 40 1 1.8489 -7.2732 1.9295 41 1 5.8839 -6.6149 3.1474 42 1 5.4201 -3.1802 4.0121 43 1 5.6213 -2.7406 1.6729 44 1 2.5346 -2.7969 0.5814 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17541466_12419820.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:49:11 Heat of formation + Delta-G solvation = -182.978504 kcal Electronic energy + Delta-G solvation = -29318.789356 eV Core-core repulsion = 24908.824793 eV Total energy + Delta-G solvation = -4409.964563 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 354.113 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.12040 -48.64232 -48.57115 -41.49696 -39.54060 -37.66817 -34.32625 -33.03395 -31.87437 -31.00205 -29.58084 -28.55410 -28.48676 -27.09601 -26.95614 -24.16946 -23.26266 -22.99944 -21.85244 -19.49304 -19.43985 -19.38249 -18.46253 -18.10621 -17.06055 -16.80597 -16.41776 -15.91960 -15.71673 -15.51239 -15.45229 -15.16762 -15.14486 -15.01071 -14.75558 -14.72723 -14.63686 -14.46083 -14.26192 -14.21579 -14.05816 -13.88673 -13.82751 -13.62213 -13.38104 -13.33319 -13.19933 -13.14838 -12.95198 -12.73417 -12.27568 -12.19811 -11.86061 -11.44330 -11.23664 -11.08137 -10.98525 -10.96820 -10.49098 -10.20432 -9.88699 -9.54024 -0.51766 -0.02054 0.21538 0.37026 1.10472 1.44568 1.49067 1.59566 1.63804 1.76033 1.84825 1.92282 2.18310 2.45361 2.68366 2.75487 2.97327 3.30087 3.41782 3.44644 3.59069 3.75108 3.89471 3.96772 3.98925 4.10083 4.19617 4.28789 4.41628 4.47294 4.59799 4.62946 4.63678 4.67251 4.68201 4.68825 4.69618 4.71583 4.87474 4.92816 5.02890 5.12072 5.30493 5.36177 5.39749 5.45250 5.46738 5.48198 5.52422 5.92624 6.44256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.061 2.939 3 C -0.450 4.450 4 C -0.451 4.451 5 C -0.368 4.368 6 C -0.077 4.077 7 C -0.127 4.127 8 C -0.093 4.093 9 C -0.079 4.079 10 C 0.001 3.999 11 C -0.105 4.105 12 C -0.064 4.064 13 C -0.176 4.176 14 C 0.508 3.492 15 F -0.175 7.175 16 F -0.174 7.174 17 F -0.175 7.175 18 C -0.070 4.070 19 C -0.103 4.103 20 C -0.095 4.095 21 O -0.530 6.530 22 Si 0.999 3.001 23 H -0.247 1.247 24 H -0.249 1.249 25 H -0.243 1.243 26 C -0.069 4.069 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.141 0.859 40 H 0.145 0.855 41 H 0.136 0.864 42 H 0.084 0.916 43 H 0.366 0.634 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.637 4.310 -0.019 5.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.253 2.747 3 C -0.558 4.558 4 C -0.559 4.559 5 C -0.410 4.410 6 C -0.095 4.095 7 C -0.145 4.145 8 C -0.111 4.111 9 C -0.079 4.079 10 C 0.001 3.999 11 C -0.122 4.122 12 C -0.082 4.082 13 C -0.177 4.177 14 C 0.453 3.547 15 F -0.156 7.156 16 F -0.155 7.155 17 F -0.156 7.156 18 C -0.088 4.088 19 C -0.103 4.103 20 C -0.203 4.203 21 O -0.335 6.335 22 Si 0.817 3.183 23 H -0.171 1.171 24 H -0.172 1.172 25 H -0.166 1.166 26 C -0.087 4.087 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.159 0.841 40 H 0.162 0.838 41 H 0.154 0.846 42 H 0.102 0.898 43 H 0.215 0.785 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.396 3.484 0.599 3.801 hybrid contribution -0.986 0.103 -0.236 1.019 sum -2.382 3.588 0.362 4.322 Atomic orbital electron populations 1.26136 1.20470 1.04589 1.04566 0.78160 0.66838 0.66151 0.63565 1.26143 1.06538 1.18509 1.04629 1.26150 1.06571 1.08024 1.15123 1.27381 1.04084 0.99044 1.10464 1.21212 0.95850 0.99894 0.92547 1.21222 1.00009 0.94344 0.98919 1.21242 0.98563 0.94288 0.97000 1.18799 1.02996 0.91006 0.95097 1.18893 0.92461 0.92634 0.95899 1.21272 0.99343 0.92021 0.99612 1.21034 0.95317 0.96232 0.95657 1.19961 0.97201 0.91056 1.09526 1.18266 0.74266 0.88102 0.74023 1.93184 1.48442 1.82942 1.91043 1.93244 1.60460 1.94793 1.67028 1.93236 1.91161 1.91198 1.40018 1.20772 0.98539 0.92705 0.96750 1.20264 0.95204 0.93679 1.01195 1.25492 1.03254 0.98806 0.92784 1.86734 1.39370 1.67356 1.40087 0.84654 0.76427 0.78509 0.78681 1.17091 1.17230 1.16637 1.21151 0.96198 0.94527 0.96851 0.91155 0.90972 0.91181 0.90968 0.90898 0.91164 0.91206 0.90879 0.90942 0.85880 0.85759 0.85782 0.84138 0.83755 0.84626 0.89808 0.78546 0.85745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.12 8.65 101.05 0.87 2.00 16 2 Si 1.06 -3.95 12.31 -169.99 -2.09 -6.04 16 3 C -0.45 1.26 8.53 101.05 0.86 2.12 16 4 C -0.45 1.22 8.53 101.05 0.86 2.08 16 5 C -0.37 0.77 4.59 -39.63 -0.18 0.59 16 6 C -0.08 0.13 9.29 -39.52 -0.37 -0.24 16 7 C -0.13 0.16 10.03 -39.63 -0.40 -0.23 16 8 C -0.09 0.08 7.95 -39.25 -0.31 -0.23 16 9 C -0.08 0.06 3.90 -104.90 -0.41 -0.35 16 10 C 0.00 0.00 5.38 -104.90 -0.56 -0.56 16 11 C -0.10 0.09 9.63 -39.25 -0.38 -0.29 16 12 C -0.06 0.02 9.42 -39.63 -0.37 -0.36 16 13 C -0.18 -0.21 5.38 -104.56 -0.56 -0.78 16 14 C 0.51 1.03 3.31 36.01 0.12 1.15 16 15 F -0.17 -0.34 15.96 2.25 0.04 -0.31 16 16 F -0.17 -0.51 17.23 2.25 0.04 -0.48 16 17 F -0.17 -0.47 17.23 2.25 0.04 -0.43 16 18 C -0.07 -0.09 8.20 -39.63 -0.33 -0.42 16 19 C -0.10 -0.06 5.27 -104.29 -0.55 -0.61 16 20 C -0.10 -0.02 2.12 36.00 0.08 0.06 16 21 O -0.53 -0.64 12.65 -35.23 -0.45 -1.08 16 22 Si 1.00 0.56 25.74 -169.99 -4.38 -3.81 16 23 H -0.25 -0.35 6.74 56.52 0.38 0.03 16 24 H -0.25 -0.34 7.11 56.52 0.40 0.06 16 25 H -0.24 -0.03 7.11 56.52 0.40 0.38 16 26 C -0.07 0.11 8.87 -39.25 -0.35 -0.24 16 27 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 28 H 0.07 -0.18 7.96 -51.92 -0.41 -0.59 16 29 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 30 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 31 H 0.07 -0.19 7.96 -51.92 -0.41 -0.61 16 32 H 0.07 -0.21 7.67 -51.93 -0.40 -0.61 16 33 H 0.07 -0.19 7.68 -51.93 -0.40 -0.59 16 34 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 35 H 0.07 -0.17 7.96 -51.93 -0.41 -0.59 16 36 H 0.12 -0.40 7.40 -52.49 -0.39 -0.79 16 37 H 0.12 -0.33 8.06 -52.48 -0.42 -0.76 16 38 H 0.12 -0.23 7.03 -52.49 -0.37 -0.60 16 39 H 0.14 -0.37 8.06 -52.48 -0.42 -0.80 16 40 H 0.14 -0.26 7.14 -52.49 -0.37 -0.63 16 41 H 0.14 0.12 4.88 -52.49 -0.26 -0.14 16 42 H 0.08 -0.11 4.97 -51.93 -0.26 -0.36 16 43 H 0.37 -0.23 7.99 45.56 0.36 0.13 16 44 H 0.12 -0.34 7.42 -52.49 -0.39 -0.73 16 LS Contribution 375.17 15.07 5.65 5.65 Total: 0.00 -4.21 375.17 -8.15 -12.36 By element: Atomic # 1 Polarization: -4.52 SS G_CDS: -5.03 Total: -9.54 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -1.97 Total: 3.68 kcal Atomic # 8 Polarization: -0.64 SS G_CDS: -0.45 Total: -1.08 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.11 Total: -1.21 kcal Atomic # 14 Polarization: -3.39 SS G_CDS: -6.47 Total: -9.86 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -4.21 -8.15 -12.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17541466_12419820.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.618 kcal (2) G-P(sol) polarization free energy of solvation -4.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds