Wall clock time and date at job start Mon Mar 8 2021 06:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86302 * 109.47369 * 2 1 4 4 C 1.86303 * 109.47190 * 239.99737 * 2 1 3 5 5 C 1.86794 * 109.46915 * 119.99758 * 2 1 3 6 6 C 1.38301 * 119.94147 * 269.97597 * 5 2 1 7 7 C 1.38340 * 120.24534 * 179.97438 * 6 5 2 8 8 C 1.37999 * 120.12561 * 359.77220 * 7 6 5 9 9 C 1.39367 * 119.87026 * 0.50309 * 8 7 6 10 10 C 1.48390 * 120.11898 * 179.74750 * 9 8 7 11 11 C 1.39309 * 120.12365 * 123.11822 * 10 9 8 12 12 C 1.38043 * 119.87969 * 179.97438 * 11 10 9 13 13 C 1.38297 * 120.11900 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.87782 * 180.02562 * 13 12 11 15 15 F 1.39908 * 109.47041 * 0.02562 * 14 13 12 16 16 F 1.39898 * 109.47275 * 119.99905 * 14 13 12 17 17 F 1.39895 * 109.47184 * 240.00432 * 14 13 12 18 18 C 1.38339 * 120.24530 * 0.04826 * 13 12 11 19 19 C 1.38000 * 120.12448 * 359.94804 * 18 13 12 20 20 C 1.50694 * 120.06327 * 180.29747 * 19 18 13 21 21 O 1.42904 * 109.46901 * 105.13150 * 20 19 18 22 22 Si 1.86292 * 109.47265 * 345.12932 * 20 19 18 23 23 H 1.48507 * 109.47234 * 59.99892 * 22 20 19 24 24 H 1.48499 * 109.47114 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47374 * 300.00111 * 22 20 19 26 26 C 1.38048 * 119.94044 * 90.00002 * 5 2 1 27 27 H 1.08999 * 109.47006 * 300.00440 * 1 2 3 28 28 H 1.09010 * 109.46889 * 59.99766 * 1 2 3 29 29 H 1.08990 * 109.47282 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46804 * 180.02562 * 3 2 1 31 31 H 1.09009 * 109.46786 * 299.99901 * 3 2 1 32 32 H 1.08996 * 109.47020 * 59.99169 * 3 2 1 33 33 H 1.09003 * 109.46751 * 300.00238 * 4 2 1 34 34 H 1.08995 * 109.47079 * 60.00007 * 4 2 1 35 35 H 1.08999 * 109.47111 * 180.02562 * 4 2 1 36 36 H 1.08001 * 119.87917 * 0.02562 * 6 5 2 37 37 H 1.08004 * 119.93985 * 180.02562 * 7 6 5 38 38 H 1.07993 * 120.06821 * 180.28056 * 8 7 6 39 39 H 1.08008 * 120.06165 * 0.02562 * 11 10 9 40 40 H 1.07998 * 119.93734 * 180.02562 * 12 11 10 41 41 H 1.07997 * 119.93840 * 179.97438 * 18 13 12 42 42 H 1.09003 * 109.47067 * 225.12408 * 20 19 18 43 43 H 0.96702 * 113.99966 * 59.99980 * 21 20 19 44 44 H 1.07999 * 120.05917 * 359.95483 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4856 -0.8805 1.5252 6 6 2.7161 -0.1679 2.6879 7 6 3.1767 -0.8137 3.8213 8 6 3.4042 -2.1747 3.7987 9 6 3.1791 -2.8967 2.6282 10 6 3.4273 -4.3594 2.5961 11 6 2.4045 -5.2344 2.2369 12 6 2.6410 -6.5941 2.2083 13 6 3.8908 -7.0880 2.5349 14 6 4.1432 -8.5734 2.5013 15 9 2.9737 -9.2365 2.1142 16 9 5.1623 -8.8526 1.5845 17 9 4.5279 -9.0099 3.7735 18 6 4.9100 -6.2238 2.8928 19 6 4.6846 -4.8627 2.9247 20 6 5.7977 -3.9220 3.3083 21 8 6.2884 -3.2628 2.1392 22 14 7.1791 -4.8861 4.1037 23 1 7.6935 -5.8967 3.1448 24 1 8.2762 -3.9591 4.4811 25 1 6.6692 -5.5710 5.3185 26 6 2.7152 -2.2413 1.4897 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 3.5741 1.7563 -0.0005 31 1 2.1207 2.2703 -0.8901 32 1 2.1207 2.2703 0.8899 33 1 2.1206 -1.9060 -1.5210 34 1 2.1207 -0.3645 -2.4111 35 1 3.5740 -0.8787 -1.5209 36 1 2.5352 0.8966 2.7113 37 1 3.3547 -0.2525 4.7267 38 1 3.7595 -2.6786 4.6853 39 1 1.4284 -4.8495 1.9804 40 1 1.8489 -7.2732 1.9295 41 1 5.8839 -6.6149 3.1474 42 1 5.4201 -3.1802 4.0121 43 1 5.6213 -2.7406 1.6729 44 1 2.5346 -2.7969 0.5814 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17541466_12419820.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:49:10 Heat of formation + Delta-G solvation = -170.502286 kcal Electronic energy + Delta-G solvation = -29318.248346 eV Core-core repulsion = 24908.824793 eV Total energy + Delta-G solvation = -4409.423553 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 354.113 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.29602 -48.81090 -48.76921 -41.44211 -39.41414 -37.69887 -34.27128 -33.01329 -31.70783 -30.91837 -29.33950 -28.31707 -28.24393 -27.10031 -26.98166 -24.13190 -23.16179 -22.91107 -21.81331 -19.62233 -19.56029 -19.53424 -18.43001 -18.05347 -16.98534 -16.77938 -16.40058 -15.82506 -15.78947 -15.66896 -15.44015 -15.21841 -15.19948 -15.10822 -14.92137 -14.88792 -14.55490 -14.37652 -14.05249 -14.02020 -13.93797 -13.76271 -13.69599 -13.49612 -13.23613 -13.10866 -13.05799 -12.94259 -12.78896 -12.71569 -12.34104 -12.06357 -11.94945 -11.45375 -11.17091 -10.91809 -10.80973 -10.73339 -10.41227 -10.18399 -9.72241 -9.42754 -0.49058 -0.00564 0.37059 0.50704 1.06223 1.38557 1.40712 1.51480 1.84980 1.86396 2.04210 2.09607 2.22287 2.56807 2.69017 2.86021 2.92042 3.26675 3.35244 3.47991 3.59598 3.76107 4.01560 4.02286 4.13024 4.22039 4.32436 4.36717 4.52457 4.60847 4.67932 4.81915 4.86856 4.87231 4.91031 4.91471 4.92483 4.93110 4.95087 4.99344 5.14769 5.20622 5.44140 5.51634 5.60213 5.61598 5.63224 5.70739 5.73641 6.10515 6.49162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.131 2.869 3 C -0.465 4.465 4 C -0.466 4.466 5 C -0.376 4.376 6 C -0.086 4.086 7 C -0.137 4.137 8 C -0.104 4.104 9 C -0.086 4.086 10 C 0.003 3.997 11 C -0.102 4.102 12 C -0.063 4.063 13 C -0.187 4.187 14 C 0.507 3.493 15 F -0.174 7.174 16 F -0.182 7.182 17 F -0.181 7.181 18 C -0.085 4.085 19 C -0.109 4.109 20 C -0.092 4.092 21 O -0.543 6.543 22 Si 1.008 2.992 23 H -0.265 1.265 24 H -0.261 1.261 25 H -0.237 1.237 26 C -0.075 4.075 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.162 0.838 40 H 0.159 0.841 41 H 0.132 0.868 42 H 0.099 0.901 43 H 0.374 0.626 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.678 5.179 -0.183 6.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.317 2.683 3 C -0.572 4.572 4 C -0.573 4.573 5 C -0.416 4.416 6 C -0.104 4.104 7 C -0.155 4.155 8 C -0.122 4.122 9 C -0.087 4.087 10 C 0.003 3.997 11 C -0.120 4.120 12 C -0.081 4.081 13 C -0.189 4.189 14 C 0.453 3.547 15 F -0.156 7.156 16 F -0.164 7.164 17 F -0.162 7.162 18 C -0.102 4.102 19 C -0.110 4.110 20 C -0.201 4.201 21 O -0.350 6.350 22 Si 0.829 3.171 23 H -0.190 1.190 24 H -0.185 1.185 25 H -0.160 1.160 26 C -0.093 4.093 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.156 0.844 37 H 0.153 0.847 38 H 0.146 0.854 39 H 0.179 0.821 40 H 0.177 0.823 41 H 0.150 0.850 42 H 0.117 0.883 43 H 0.223 0.777 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.441 4.350 0.444 5.008 hybrid contribution -0.667 -0.150 -0.200 0.712 sum -3.108 4.200 0.244 5.231 Atomic orbital electron populations 1.26320 1.21834 1.04501 1.04483 0.77084 0.64981 0.64495 0.61698 1.26313 1.06503 1.19573 1.04784 1.26331 1.06515 1.08473 1.15951 1.27752 1.03693 0.99009 1.11123 1.21491 0.95546 1.00795 0.92534 1.21435 1.00030 0.94380 0.99627 1.21376 0.98897 0.94641 0.97249 1.18819 1.03664 0.90616 0.95552 1.19022 0.92201 0.93215 0.95270 1.21528 1.00043 0.91630 0.98802 1.21245 0.95021 0.96850 0.95003 1.19973 0.97964 0.90292 1.10650 1.18401 0.74009 0.88702 0.73589 1.93177 1.48324 1.83049 1.91017 1.93222 1.60908 1.94919 1.67314 1.93218 1.91244 1.91356 1.40428 1.20847 0.98612 0.93244 0.97541 1.20293 0.95718 0.93346 1.01595 1.25430 1.02834 0.99018 0.92774 1.86708 1.40103 1.67622 1.40538 0.84529 0.76210 0.77792 0.78533 1.18954 1.18523 1.15951 1.21344 0.95984 0.94906 0.97043 0.91333 0.90985 0.91284 0.91203 0.90981 0.90833 0.90992 0.90968 0.91218 0.84448 0.84736 0.85359 0.82070 0.82300 0.85001 0.88307 0.77686 0.84652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 2.67 8.65 113.37 0.98 3.66 16 2 Si 1.13 -9.42 12.31 68.60 0.84 -8.58 16 3 C -0.46 2.93 8.53 113.37 0.97 3.90 16 4 C -0.47 2.81 8.53 113.37 0.97 3.77 16 5 C -0.38 1.93 4.59 22.24 0.10 2.03 16 6 C -0.09 0.37 9.29 22.31 0.21 0.58 16 7 C -0.14 0.45 10.03 22.24 0.22 0.67 16 8 C -0.10 0.24 7.95 22.49 0.18 0.42 16 9 C -0.09 0.19 3.90 -20.04 -0.08 0.11 16 10 C 0.00 0.00 5.38 -20.04 -0.11 -0.11 16 11 C -0.10 0.26 9.63 22.48 0.22 0.48 16 12 C -0.06 0.06 9.42 22.24 0.21 0.27 16 13 C -0.19 -0.55 5.38 -19.83 -0.11 -0.65 16 14 C 0.51 2.46 3.31 71.24 0.24 2.70 16 15 F -0.17 -0.74 15.96 44.97 0.72 -0.02 16 16 F -0.18 -1.29 17.23 44.97 0.78 -0.51 16 17 F -0.18 -1.16 17.23 44.97 0.78 -0.38 16 18 C -0.08 -0.29 8.20 22.24 0.18 -0.11 16 19 C -0.11 -0.17 5.27 -19.65 -0.10 -0.27 16 20 C -0.09 -0.07 2.12 71.23 0.15 0.08 16 21 O -0.54 -1.51 12.65 -148.98 -1.89 -3.39 16 22 Si 1.01 2.24 25.74 68.60 1.77 4.01 16 23 H -0.26 -1.29 6.74 99.48 0.67 -0.62 16 24 H -0.26 -1.03 7.11 99.48 0.71 -0.33 16 25 H -0.24 -0.22 7.11 99.48 0.71 0.49 16 26 C -0.07 0.30 8.87 22.48 0.20 0.50 16 27 H 0.07 -0.36 7.96 -2.39 -0.02 -0.37 16 28 H 0.07 -0.40 7.96 -2.38 -0.02 -0.42 16 29 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 30 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 31 H 0.07 -0.43 7.96 -2.38 -0.02 -0.44 16 32 H 0.07 -0.50 7.67 -2.39 -0.02 -0.52 16 33 H 0.07 -0.46 7.68 -2.39 -0.02 -0.47 16 34 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 35 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 36 H 0.14 -1.07 7.40 -2.91 -0.02 -1.10 16 37 H 0.13 -0.81 8.06 -2.91 -0.02 -0.84 16 38 H 0.13 -0.50 7.03 -2.91 -0.02 -0.52 16 39 H 0.16 -1.13 8.06 -2.91 -0.02 -1.15 16 40 H 0.16 -0.70 7.14 -2.91 -0.02 -0.72 16 41 H 0.13 0.44 4.88 -2.91 -0.01 0.43 16 42 H 0.10 -0.25 4.97 -2.39 -0.01 -0.26 16 43 H 0.37 -0.44 7.99 -74.06 -0.59 -1.03 16 44 H 0.14 -0.91 7.42 -2.91 -0.02 -0.93 16 Total: 0.00 -9.88 375.17 8.58 -1.30 By element: Atomic # 1 Polarization: -11.59 SS G_CDS: 1.17 Total: -10.43 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: 4.42 Total: 18.01 kcal Atomic # 8 Polarization: -1.51 SS G_CDS: -1.89 Total: -3.39 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 2.27 Total: -0.91 kcal Atomic # 14 Polarization: -7.18 SS G_CDS: 2.61 Total: -4.57 kcal Total: -9.88 8.58 -1.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17541466_12419820.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.206 kcal (2) G-P(sol) polarization free energy of solvation -9.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -1.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds