Wall clock time and date at job start Mon Mar 8 2021 06:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38296 * 119.94222 * 2 1 4 4 C 1.38346 * 120.24378 * 179.74383 * 3 2 1 5 5 C 1.37998 * 120.12025 * 0.56014 * 4 3 2 6 6 C 1.50701 * 120.06299 * 179.71851 * 5 4 3 7 7 O 1.42894 * 109.46927 * 254.64941 * 6 5 4 8 8 Si 1.86302 * 109.46831 * 14.64626 * 6 5 4 9 9 H 1.48499 * 109.47024 * 59.99878 * 8 6 5 10 10 H 1.48502 * 109.47359 * 299.99926 * 8 6 5 11 11 H 1.48501 * 109.47074 * 180.02562 * 8 6 5 12 12 C 1.39359 * 119.87840 * 359.44546 * 5 4 3 13 13 C 1.48386 * 120.12408 * 180.25523 * 12 5 4 14 14 C 1.39316 * 120.11782 * 56.72153 * 13 12 5 15 15 C 1.38048 * 119.87439 * 180.02562 * 14 13 12 16 16 C 1.38301 * 120.12066 * 359.97438 * 15 14 13 17 17 C 1.38343 * 120.24478 * 359.97438 * 16 15 14 18 18 Si 1.86798 * 119.93831 * 180.02562 * 17 16 15 19 19 C 1.86296 * 109.47071 * 90.00073 * 18 17 16 20 20 C 1.86300 * 109.47020 * 210.00209 * 18 17 16 21 21 C 1.86299 * 109.47300 * 330.00075 * 18 17 16 22 22 C 1.38000 * 120.11970 * 359.76548 * 17 16 15 23 23 C 1.38047 * 119.93514 * 180.02562 * 2 1 3 24 24 H 1.08996 * 109.46903 * 269.97878 * 1 2 3 25 25 H 1.09005 * 109.46725 * 29.97712 * 1 2 3 26 26 H 1.08997 * 109.46984 * 149.97086 * 1 2 3 27 27 H 1.08001 * 119.88021 * 0.04845 * 3 2 1 28 28 H 1.07998 * 119.94270 * 180.27829 * 4 3 2 29 29 H 1.08999 * 109.47170 * 134.64540 * 6 5 4 30 30 H 0.96705 * 113.99506 * 180.02562 * 7 6 5 31 31 H 1.08002 * 120.06550 * 0.02720 * 14 13 12 32 32 H 1.08001 * 119.93779 * 179.97438 * 15 14 13 33 33 H 1.07995 * 119.87404 * 180.02562 * 16 15 14 34 34 H 1.09000 * 109.47021 * 60.00108 * 19 18 17 35 35 H 1.09003 * 109.47122 * 180.02562 * 19 18 17 36 36 H 1.09001 * 109.47272 * 300.00135 * 19 18 17 37 37 H 1.08996 * 109.47548 * 59.99904 * 20 18 17 38 38 H 1.09003 * 109.46973 * 180.02562 * 20 18 17 39 39 H 1.09000 * 109.47201 * 299.99970 * 20 18 17 40 40 H 1.09001 * 109.46849 * 59.99984 * 21 18 17 41 41 H 1.08992 * 109.47507 * 180.02562 * 21 18 17 42 42 H 1.09003 * 109.47084 * 300.00168 * 21 18 17 43 43 H 1.08003 * 120.05841 * 180.27385 * 22 17 16 44 44 H 1.08000 * 120.05961 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1984 0.0000 4 6 3.5807 1.2057 0.0053 5 6 4.2795 0.0157 -0.0010 6 6 5.7865 0.0252 -0.0015 7 8 6.2645 -0.3219 -1.3027 8 14 6.3969 1.7262 0.4509 9 1 5.9001 2.0869 1.8031 10 1 5.8953 2.7120 -0.5400 11 1 7.8819 1.7358 0.4498 12 6 3.5891 -1.1948 -0.0010 13 6 4.3351 -2.4776 -0.0021 14 6 5.2587 -2.7499 1.0047 15 6 5.9503 -3.9447 0.9985 16 6 5.7271 -4.8706 -0.0043 17 6 4.8103 -4.6057 -1.0059 18 14 4.5151 -5.8627 -2.3558 19 6 3.1491 -7.0194 -1.8393 20 6 4.0260 -4.9855 -3.9249 21 6 6.0757 -6.8368 -2.6494 22 6 4.1095 -3.4169 -1.0065 23 6 2.1959 -1.1963 -0.0005 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8897 -0.5143 27 1 1.6544 2.1320 0.0008 28 1 4.1148 2.1443 0.0099 29 1 6.1547 -0.6983 0.7258 30 1 7.2286 -0.3360 -1.3766 31 1 5.4335 -2.0278 1.7885 32 1 6.6669 -4.1567 1.7782 33 1 6.2701 -5.8041 -0.0050 34 1 2.2360 -6.4495 -1.6675 35 1 2.9771 -7.7532 -2.6268 36 1 3.4352 -7.5326 -0.9212 37 1 4.8252 -4.3088 -4.2271 38 1 3.8533 -5.7191 -4.7125 39 1 3.1129 -4.4156 -3.7531 40 1 6.3619 -7.3499 -1.7313 41 1 5.9037 -7.5699 -3.4374 42 1 6.8750 -6.1600 -2.9516 43 1 3.3907 -3.2130 -1.7864 44 1 1.6558 -2.1316 -0.0005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17541466_12419824.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:49:24 Heat of formation + Delta-G solvation = -25.469653 kcal Electronic energy + Delta-G solvation = -22155.934795 eV Core-core repulsion = 19161.162256 eV Total energy + Delta-G solvation = -2994.772540 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.12971 -39.29463 -37.68178 -34.39079 -33.30561 -31.71464 -30.08434 -29.39040 -29.17954 -28.28257 -28.25858 -25.33517 -24.47458 -23.09676 -22.53896 -21.05429 -18.53370 -17.86452 -17.26577 -16.92749 -16.46038 -15.74314 -15.55608 -15.25030 -14.89255 -14.55705 -14.40373 -14.32562 -14.31040 -14.04517 -13.97736 -13.74656 -13.54193 -13.24329 -13.14981 -13.11428 -13.04758 -12.98655 -12.85819 -12.71047 -12.52909 -12.20643 -12.00664 -11.84782 -11.61995 -10.93004 -10.76646 -10.75894 -10.29407 -10.11944 -9.71048 -9.65988 -9.16504 -0.01089 0.24905 0.46229 0.71061 1.09929 1.38953 1.43321 1.83219 1.85871 2.02659 2.11561 2.57863 2.67699 2.99689 3.47112 3.61621 3.81593 3.90854 4.03785 4.11778 4.18506 4.28564 4.38622 4.42503 4.56745 4.60003 4.68827 4.79572 4.82566 4.83270 4.85823 4.87238 4.88214 4.90626 4.91524 4.99915 5.04756 5.16409 5.20576 5.34589 5.43508 5.53987 5.56951 5.58532 5.62495 5.66900 5.70243 5.71098 5.95674 6.18876 6.76733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.084 4.084 3 C -0.123 4.123 4 C -0.131 4.131 5 C -0.087 4.087 6 C -0.086 4.086 7 O -0.555 6.555 8 Si 0.973 3.027 9 H -0.257 1.257 10 H -0.264 1.264 11 H -0.252 1.252 12 C -0.032 4.032 13 C -0.061 4.061 14 C -0.112 4.112 15 C -0.137 4.137 16 C -0.097 4.097 17 C -0.378 4.378 18 Si 1.120 2.880 19 C -0.460 4.460 20 C -0.465 4.465 21 C -0.457 4.457 22 C -0.085 4.085 23 C -0.120 4.120 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.145 0.855 28 H 0.130 0.870 29 H 0.084 0.916 30 H 0.392 0.608 31 H 0.125 0.875 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.120 0.880 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.298 -1.418 0.658 1.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.084 4.084 3 C -0.141 4.141 4 C -0.148 4.148 5 C -0.087 4.087 6 C -0.195 4.195 7 O -0.363 6.363 8 Si 0.796 3.204 9 H -0.181 1.181 10 H -0.188 1.188 11 H -0.176 1.176 12 C -0.032 4.032 13 C -0.061 4.061 14 C -0.130 4.130 15 C -0.155 4.155 16 C -0.115 4.115 17 C -0.418 4.418 18 Si 1.307 2.693 19 C -0.566 4.566 20 C -0.571 4.571 21 C -0.564 4.564 22 C -0.103 4.103 23 C -0.138 4.138 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.163 0.837 28 H 0.148 0.852 29 H 0.102 0.898 30 H 0.242 0.758 31 H 0.143 0.857 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.137 0.863 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.038 -0.572 0.817 0.998 hybrid contribution 0.445 0.028 0.146 0.470 sum 0.408 -0.544 0.963 1.179 Atomic orbital electron populations 1.20865 0.89199 1.03811 1.03269 1.20199 0.97533 0.92602 0.98032 1.21313 0.93608 0.98794 1.00389 1.21212 0.95431 0.97367 1.00829 1.19504 0.94262 0.92800 1.02164 1.24944 0.93682 1.11539 0.89381 1.86492 1.27904 1.93004 1.28938 0.85395 0.79737 0.75470 0.79762 1.18066 1.18831 1.17624 1.18846 0.93116 0.92104 0.99179 1.18872 0.97513 0.93045 0.96647 1.21308 0.96030 0.97711 0.97985 1.21420 1.00247 0.94079 0.99743 1.21428 0.97048 0.99376 0.93671 1.27833 0.98598 1.05855 1.09494 0.77269 0.66369 0.63157 0.62468 1.26248 1.13422 1.10964 1.06009 1.26328 1.05393 1.08359 1.17042 1.26205 1.15852 1.09015 1.05369 1.21220 0.98890 0.93386 0.96803 1.21325 0.92778 0.98621 1.01091 0.90175 0.90386 0.90799 0.83749 0.85205 0.89790 0.75842 0.85749 0.84601 0.84302 0.91580 0.90592 0.91114 0.91670 0.90544 0.91573 0.90591 0.90600 0.91279 0.86256 0.84917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.17 10.01 71.24 0.71 0.88 16 2 C -0.08 -0.30 5.88 -19.90 -0.12 -0.42 16 3 C -0.12 -0.47 9.69 22.31 0.22 -0.25 16 4 C -0.13 -0.74 8.66 22.24 0.19 -0.55 16 5 C -0.09 -0.61 5.30 -19.65 -0.10 -0.71 16 6 C -0.09 -0.29 2.06 71.24 0.15 -0.14 16 7 O -0.56 -2.40 12.80 -148.98 -1.91 -4.31 16 8 Si 0.97 1.38 25.48 68.60 1.75 3.13 16 9 H -0.26 -0.65 7.11 99.48 0.71 0.05 16 10 H -0.26 -1.02 6.74 99.48 0.67 -0.35 16 11 H -0.25 -0.15 7.11 99.48 0.71 0.56 16 12 C -0.03 -0.24 5.40 -20.04 -0.11 -0.35 16 13 C -0.06 -0.40 4.86 -20.05 -0.10 -0.50 16 14 C -0.11 -0.50 7.95 22.48 0.18 -0.33 16 15 C -0.14 -0.30 10.03 22.24 0.22 -0.08 16 16 C -0.10 -0.12 9.29 22.31 0.21 0.08 16 17 C -0.38 -0.63 4.59 22.24 0.10 -0.53 16 18 Si 1.12 -4.07 12.31 68.60 0.84 -3.23 16 19 C -0.46 1.06 8.65 113.37 0.98 2.04 16 20 C -0.46 0.46 8.53 113.37 0.97 1.43 16 21 C -0.46 1.56 8.53 113.37 0.97 2.53 16 22 C -0.09 -0.43 8.87 22.48 0.20 -0.23 16 23 C -0.12 -0.66 9.27 22.49 0.21 -0.45 16 24 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 25 H 0.08 -0.25 8.08 -2.38 -0.02 -0.27 16 26 H 0.07 -0.18 8.08 -2.39 -0.02 -0.20 16 27 H 0.14 -0.12 8.06 -2.91 -0.02 -0.14 16 28 H 0.13 0.42 4.88 -2.91 -0.01 0.41 16 29 H 0.08 0.10 4.93 -2.39 -0.01 0.09 16 30 H 0.39 -1.70 8.74 -74.05 -0.65 -2.35 16 31 H 0.12 0.28 7.00 -2.91 -0.02 0.26 16 32 H 0.14 -0.26 8.06 -2.91 -0.02 -0.29 16 33 H 0.14 -0.48 7.41 -2.91 -0.02 -0.50 16 34 H 0.06 -0.09 7.96 -2.39 -0.02 -0.11 16 35 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 36 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 37 H 0.06 0.03 7.96 -2.39 -0.02 0.01 16 38 H 0.08 -0.16 7.96 -2.39 -0.02 -0.18 16 39 H 0.07 -0.03 7.68 -2.39 -0.02 -0.04 16 40 H 0.07 -0.33 7.68 -2.39 -0.02 -0.35 16 41 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 42 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 43 H 0.12 0.45 7.42 -2.91 -0.02 0.43 16 44 H 0.13 0.39 8.06 -2.91 -0.02 0.37 16 Total: 0.00 -12.40 359.08 6.61 -5.79 By element: Atomic # 1 Polarization: -4.84 SS G_CDS: 1.05 Total: -3.79 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 4.88 Total: 2.41 kcal Atomic # 8 Polarization: -2.40 SS G_CDS: -1.91 Total: -4.31 kcal Atomic # 14 Polarization: -2.69 SS G_CDS: 2.59 Total: -0.10 kcal Total: -12.40 6.61 -5.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17541466_12419824.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.684 kcal (2) G-P(sol) polarization free energy of solvation -12.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds