Wall clock time and date at job start Mon Mar 8 2021 06:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86293 * 1 3 3 C 1.86308 * 109.46898 * 2 1 4 4 C 1.86302 * 109.47503 * 240.00055 * 2 1 3 5 5 C 1.86801 * 109.47161 * 119.99860 * 2 1 3 6 6 C 1.38297 * 119.94035 * 90.00494 * 5 2 1 7 7 C 1.38344 * 120.24414 * 179.97438 * 6 5 2 8 8 C 1.37994 * 120.11990 * 0.27939 * 7 6 5 9 9 C 1.39357 * 119.87929 * 359.46554 * 8 7 6 10 10 C 1.48392 * 120.12207 * 180.25249 * 9 8 7 11 11 C 1.39356 * 120.08504 * 180.02562 * 10 9 8 12 12 C 1.38095 * 120.02783 * 179.72183 * 11 10 9 13 13 C 1.38165 * 120.19832 * 0.55375 * 12 11 10 14 14 C 1.50693 * 119.91551 * 179.74043 * 13 12 11 15 15 O 1.42902 * 109.47021 * 104.98021 * 14 13 12 16 16 Si 1.86302 * 109.47247 * 344.98114 * 14 13 12 17 17 H 1.48501 * 109.47053 * 299.99760 * 16 14 13 18 18 H 1.48498 * 109.47239 * 59.99946 * 16 14 13 19 19 H 1.48507 * 109.47194 * 179.97438 * 16 14 13 20 20 C 1.39003 * 120.16806 * 359.72208 * 13 12 11 21 21 N 1.39696 * 120.01307 * 179.97438 * 20 13 12 22 22 C 1.47017 * 111.00051 * 243.65686 * 21 20 13 23 23 C 1.53098 * 109.25826 * 177.60981 * 22 21 20 24 24 O 1.43009 * 109.25756 * 56.84669 * 23 22 21 25 25 C 1.43014 * 113.74181 * 301.33084 * 24 23 22 26 26 C 1.47015 * 111.00067 * 120.02303 * 21 20 13 27 27 C 1.38680 * 119.97316 * 0.02562 * 20 13 12 28 28 C 1.38047 * 119.93985 * 270.02336 * 5 2 1 29 29 H 1.08998 * 109.47596 * 300.00001 * 1 2 3 30 30 H 1.09001 * 109.47631 * 60.00334 * 1 2 3 31 31 H 1.09007 * 109.47139 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46971 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46974 * 299.99752 * 3 2 1 34 34 H 1.09005 * 109.46935 * 60.00022 * 3 2 1 35 35 H 1.08993 * 109.47084 * 300.00012 * 4 2 1 36 36 H 1.09006 * 109.46859 * 59.99944 * 4 2 1 37 37 H 1.08998 * 109.47160 * 179.97438 * 4 2 1 38 38 H 1.07998 * 119.87777 * 359.97438 * 6 5 2 39 39 H 1.08002 * 119.93651 * 179.97438 * 7 6 5 40 40 H 1.07998 * 120.06254 * 179.72857 * 8 7 6 41 41 H 1.08006 * 119.98764 * 359.97400 * 11 10 9 42 42 H 1.07996 * 119.90040 * 180.27493 * 12 11 10 43 43 H 1.08999 * 109.47557 * 224.98013 * 14 13 12 44 44 H 0.96701 * 114.00235 * 180.02562 * 15 14 13 45 45 H 1.09005 * 109.50655 * 297.54293 * 22 21 20 46 46 H 1.09002 * 109.50604 * 57.67294 * 22 21 20 47 47 H 1.08998 * 109.50400 * 296.91089 * 23 22 21 48 48 H 1.08997 * 109.53809 * 176.80722 * 23 22 21 49 49 H 1.09000 * 109.50665 * 298.73489 * 25 24 23 50 50 H 1.09001 * 109.54127 * 178.63093 * 25 24 23 51 51 H 1.09003 * 109.50222 * 302.32879 * 26 21 20 52 52 H 1.08999 * 109.50705 * 62.40938 * 26 21 20 53 53 H 1.08004 * 120.10275 * 180.02562 * 27 20 13 54 54 H 1.08004 * 120.06096 * 0.02562 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4839 1.7566 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4856 -0.8805 1.5252 6 6 2.7158 -2.2438 1.4896 7 6 3.1774 -2.9021 2.6154 8 6 3.4053 -2.2019 3.7824 9 6 3.1802 -0.8273 3.8225 10 6 3.4288 -0.0680 5.0730 11 6 3.2029 1.3065 5.1123 12 6 3.4291 2.0109 6.2784 13 6 3.8905 1.3590 7.4058 14 6 4.1409 2.1349 8.6731 15 8 3.0941 1.8692 9.6089 16 14 4.1815 3.9572 8.2878 17 1 5.2693 4.2334 7.3153 18 1 2.8795 4.3690 7.7043 19 1 4.4276 4.7219 9.5368 20 6 4.1241 -0.0109 7.3740 21 7 4.5912 -0.6667 8.5156 22 6 5.9271 -1.2362 8.2867 23 6 6.4245 -1.8919 9.5776 24 8 5.4800 -2.8794 9.9993 25 6 4.1683 -2.3593 10.2321 26 6 3.6480 -1.7083 8.9479 27 6 3.8943 -0.7261 6.2083 28 6 2.7148 -0.1694 2.6860 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.5739 1.7566 0.0005 33 1 2.1206 2.2703 -0.8900 34 1 2.1205 2.2704 0.8900 35 1 2.1208 -1.9058 -1.5211 36 1 2.1207 -0.3643 -2.4111 37 1 3.5740 -0.8778 -1.5213 38 1 2.5345 -2.7964 0.5796 39 1 3.3551 -3.9669 2.5821 40 1 3.7615 -2.7176 4.6620 41 1 2.8468 1.8205 4.2317 42 1 3.2491 3.0754 6.3078 43 1 5.0965 1.8328 9.1014 44 1 3.1901 2.3369 10.4498 45 1 5.8731 -1.9844 7.4958 46 1 6.6151 -0.4436 7.9925 47 1 6.5297 -1.1339 10.3537 48 1 7.3899 -2.3649 9.3977 49 1 4.2078 -1.6149 11.0273 50 1 3.5013 -3.1700 10.5253 51 1 2.6723 -1.2603 9.1363 52 1 3.5570 -2.4636 8.1672 53 1 4.0747 -1.7907 6.1815 54 1 2.5341 0.8951 2.7130 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17541466_12419860.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:58:21 Heat of formation + Delta-G solvation = -47.037200 kcal Electronic energy + Delta-G solvation = -31907.694890 eV Core-core repulsion = 27933.040011 eV Total energy + Delta-G solvation = -3974.654879 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 371.183 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.72409 -40.30419 -39.35933 -37.45417 -36.65535 -33.94374 -32.23090 -32.12978 -31.11123 -30.66229 -29.37490 -28.33578 -28.28168 -27.82026 -26.30034 -25.03986 -24.29706 -23.51775 -22.58325 -21.44969 -21.10856 -18.78234 -18.37275 -17.78531 -17.19275 -17.13948 -16.76300 -16.41178 -16.14467 -16.02579 -15.88289 -15.57266 -15.26199 -14.98502 -14.81450 -14.61368 -14.42890 -14.35635 -14.20988 -14.05159 -13.86258 -13.76854 -13.56037 -13.45928 -13.23196 -13.13919 -13.07655 -13.02789 -12.97533 -12.56738 -12.51618 -12.40410 -12.27162 -12.12861 -11.92602 -11.74850 -11.54633 -10.99992 -10.78438 -10.78064 -10.76313 -10.55448 -10.16924 -9.89744 -9.78065 -9.62775 -8.99553 -0.39852 0.16848 0.37681 0.81696 1.18497 1.45399 1.50310 1.81757 1.90057 2.01302 2.07835 2.48272 2.54498 2.65223 2.89429 3.05282 3.44746 3.59745 3.68728 3.83920 3.88059 3.96135 4.03824 4.07632 4.11325 4.16662 4.18399 4.19535 4.30674 4.35994 4.41498 4.51345 4.60352 4.61560 4.66491 4.74180 4.79945 4.83676 4.83744 4.86029 4.87645 4.88454 4.89157 4.90308 4.92651 4.96990 5.02611 5.18666 5.26840 5.33898 5.48281 5.53565 5.58617 5.62839 5.66815 5.68526 5.70974 5.71757 6.08410 6.12040 6.22387 6.89783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.124 2.876 3 C -0.462 4.462 4 C -0.461 4.461 5 C -0.381 4.381 6 C -0.094 4.094 7 C -0.140 4.140 8 C -0.115 4.115 9 C -0.077 4.077 10 C -0.037 4.037 11 C -0.113 4.113 12 C -0.121 4.121 13 C -0.066 4.066 14 C -0.062 4.062 15 O -0.554 6.554 16 Si 0.969 3.031 17 H -0.260 1.260 18 H -0.262 1.262 19 H -0.256 1.256 20 C 0.107 3.893 21 N -0.492 5.492 22 C 0.020 3.980 23 C 0.064 3.936 24 O -0.404 6.404 25 C 0.067 3.933 26 C 0.030 3.970 27 C -0.147 4.147 28 C -0.087 4.087 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.140 0.860 39 H 0.133 0.867 40 H 0.120 0.880 41 H 0.149 0.851 42 H 0.140 0.860 43 H 0.083 0.917 44 H 0.392 0.608 45 H 0.039 0.961 46 H 0.095 0.905 47 H 0.067 0.933 48 H 0.113 0.887 49 H 0.066 0.934 50 H 0.110 0.890 51 H 0.086 0.914 52 H 0.037 0.963 53 H 0.123 0.877 54 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.587 1.927 -1.436 2.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.311 2.689 3 C -0.569 4.569 4 C -0.568 4.568 5 C -0.420 4.420 6 C -0.112 4.112 7 C -0.158 4.158 8 C -0.133 4.133 9 C -0.077 4.077 10 C -0.038 4.038 11 C -0.131 4.131 12 C -0.140 4.140 13 C -0.067 4.067 14 C -0.172 4.172 15 O -0.362 6.362 16 Si 0.793 3.207 17 H -0.184 1.184 18 H -0.187 1.187 19 H -0.180 1.180 20 C 0.013 3.987 21 N -0.214 5.214 22 C -0.106 4.106 23 C -0.012 4.012 24 O -0.323 6.323 25 C -0.010 4.010 26 C -0.097 4.097 27 C -0.167 4.167 28 C -0.105 4.105 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.158 0.842 39 H 0.151 0.849 40 H 0.138 0.862 41 H 0.167 0.833 42 H 0.157 0.843 43 H 0.101 0.899 44 H 0.242 0.758 45 H 0.058 0.942 46 H 0.114 0.886 47 H 0.085 0.915 48 H 0.131 0.869 49 H 0.084 0.916 50 H 0.128 0.872 51 H 0.104 0.896 52 H 0.055 0.945 53 H 0.141 0.859 54 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.524 2.524 -1.589 3.028 hybrid contribution 0.079 -0.785 0.109 0.796 sum 0.603 1.739 -1.480 2.362 Atomic orbital electron populations 1.26293 1.21631 1.04458 1.04569 0.77227 0.65206 0.64843 0.61644 1.26267 1.06465 1.19210 1.04982 1.26255 1.06430 1.08482 1.15628 1.27978 1.03439 0.99722 1.10820 1.21502 0.96267 0.95066 0.98385 1.21445 1.00272 1.00731 0.93379 1.21362 0.99725 0.93617 0.98604 1.19024 1.01834 0.93596 0.93248 1.18862 0.98699 0.93558 0.92653 1.21429 0.99818 0.93034 0.98815 1.21196 0.99165 1.00795 0.92800 1.19495 0.99689 0.92809 0.94747 1.24563 0.93899 1.08774 0.90008 1.86464 1.47086 1.73515 1.29086 0.85493 0.80097 0.74441 0.80637 1.18368 1.18720 1.17969 1.18519 0.98591 0.92620 0.88981 1.59820 1.02744 1.28361 1.30458 1.22927 0.90221 0.99021 0.98445 1.22780 0.92544 0.91501 0.94404 1.87983 1.20476 1.35854 1.88011 1.22732 0.83790 0.99139 0.95336 1.22778 0.96539 0.92466 0.97872 1.21780 1.01470 1.00267 0.93202 1.21442 0.96588 1.00538 0.91914 0.91502 0.90563 0.91436 0.91218 0.90490 0.90865 0.90876 0.90570 0.91249 0.84181 0.84876 0.86217 0.83310 0.84267 0.89861 0.75827 0.94247 0.88642 0.91499 0.86871 0.91585 0.87160 0.89578 0.94464 0.85883 0.84356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.44 8.65 113.37 0.98 2.42 16 2 Si 1.12 -6.01 12.31 68.60 0.84 -5.16 16 3 C -0.46 1.99 8.53 113.37 0.97 2.96 16 4 C -0.46 1.97 8.53 113.37 0.97 2.93 16 5 C -0.38 -0.08 4.59 22.24 0.10 0.02 16 6 C -0.09 -0.10 9.29 22.31 0.21 0.10 16 7 C -0.14 -0.42 10.03 22.24 0.22 -0.20 16 8 C -0.12 -0.57 9.43 22.48 0.21 -0.36 16 9 C -0.08 -0.41 5.88 -20.04 -0.12 -0.53 16 10 C -0.04 -0.21 5.87 -20.06 -0.12 -0.33 16 11 C -0.11 -0.39 9.42 22.51 0.21 -0.18 16 12 C -0.12 -0.45 8.64 22.22 0.19 -0.26 16 13 C -0.07 -0.32 5.31 -19.70 -0.10 -0.42 16 14 C -0.06 -0.07 2.32 71.23 0.17 0.10 16 15 O -0.55 -0.86 12.86 -148.98 -1.92 -2.78 16 16 Si 0.97 -0.40 25.49 68.60 1.75 1.34 16 17 H -0.26 -0.28 7.11 99.48 0.71 0.43 16 18 H -0.26 -0.45 6.73 99.48 0.67 0.21 16 19 H -0.26 0.16 7.11 99.48 0.71 0.87 16 20 C 0.11 0.59 4.71 38.18 0.18 0.77 16 21 N -0.49 -1.80 3.93 -694.41 -2.73 -4.53 16 22 C 0.02 0.03 5.40 86.31 0.47 0.50 16 23 C 0.06 0.04 7.01 72.01 0.50 0.55 16 24 O -0.40 -2.07 10.83 -148.98 -1.61 -3.69 16 25 C 0.07 0.13 7.01 72.01 0.50 0.63 16 26 C 0.03 0.10 5.36 86.31 0.46 0.57 16 27 C -0.15 -0.85 7.99 22.62 0.18 -0.67 16 28 C -0.09 -0.21 8.67 22.48 0.19 -0.01 16 29 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 30 H 0.08 -0.30 7.96 -2.39 -0.02 -0.32 16 31 H 0.07 -0.16 7.96 -2.38 -0.02 -0.18 16 32 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 33 H 0.08 -0.37 7.96 -2.39 -0.02 -0.39 16 34 H 0.07 -0.35 7.68 -2.38 -0.02 -0.37 16 35 H 0.07 -0.34 7.67 -2.39 -0.02 -0.36 16 36 H 0.08 -0.36 7.96 -2.38 -0.02 -0.38 16 37 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 38 H 0.14 -0.49 7.40 -2.91 -0.02 -0.51 16 39 H 0.13 -0.07 8.06 -2.91 -0.02 -0.09 16 40 H 0.12 0.42 6.21 -2.91 -0.02 0.40 16 41 H 0.15 -0.20 6.20 -2.91 -0.02 -0.22 16 42 H 0.14 0.10 4.86 -2.91 -0.01 0.08 16 43 H 0.08 -0.04 7.77 -2.39 -0.02 -0.06 16 44 H 0.39 -2.71 8.74 -74.06 -0.65 -3.36 16 45 H 0.04 0.12 7.41 -2.38 -0.02 0.11 16 46 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 47 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 48 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 49 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 50 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 51 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 52 H 0.04 0.17 7.21 -2.39 -0.02 0.15 16 53 H 0.12 0.62 5.18 -2.91 -0.02 0.61 16 54 H 0.14 -0.26 5.56 -2.91 -0.02 -0.28 16 Total: 0.00 -14.32 423.54 3.69 -10.63 By element: Atomic # 1 Polarization: -5.37 SS G_CDS: 0.97 Total: -4.40 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 6.38 Total: 8.58 kcal Atomic # 7 Polarization: -1.80 SS G_CDS: -2.73 Total: -4.53 kcal Atomic # 8 Polarization: -2.94 SS G_CDS: -3.53 Total: -6.47 kcal Atomic # 14 Polarization: -6.41 SS G_CDS: 2.59 Total: -3.82 kcal Total: -14.32 3.69 -10.63 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17541466_12419860.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.406 kcal (2) G-P(sol) polarization free energy of solvation -14.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds