Wall clock time and date at job start Mon Mar 8 2021 06:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37891 * 119.96348 * 2 1 4 4 C 1.39402 * 119.93001 * 180.27836 * 3 2 1 5 5 C 1.48363 * 120.06311 * 179.71505 * 4 3 2 6 6 C 1.39329 * 120.12171 * 179.72296 * 5 4 3 7 7 C 1.38035 * 119.87694 * 179.97438 * 6 5 4 8 8 C 1.38310 * 120.12056 * 0.02562 * 7 6 5 9 9 C 1.38342 * 120.24546 * 0.26738 * 8 7 6 10 10 Si 1.86805 * 119.93870 * 179.70623 * 9 8 7 11 11 C 1.86299 * 109.47276 * 89.99953 * 10 9 8 12 12 C 1.86297 * 109.47470 * 210.00486 * 10 9 8 13 13 C 1.86305 * 109.46912 * 330.00428 * 10 9 8 14 14 C 1.37998 * 120.12491 * 359.45586 * 9 8 7 15 15 C 1.39356 * 119.87221 * 359.44352 * 4 3 2 16 16 C 1.37930 * 119.93364 * 0.28008 * 15 4 3 17 17 C 1.50700 * 119.97077 * 179.97438 * 16 15 4 18 18 O 1.42892 * 109.47312 * 104.80413 * 17 16 15 19 19 Si 1.86302 * 109.46787 * 344.80847 * 17 16 15 20 20 H 1.48505 * 109.47339 * 59.99977 * 19 17 16 21 21 H 1.48495 * 109.47068 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47174 * 300.00094 * 19 17 16 23 23 C 1.38818 * 120.06467 * 359.97438 * 16 15 4 24 24 O 1.35867 * 119.93482 * 179.97438 * 23 16 15 25 25 C 1.42898 * 117.00300 * 268.66686 * 24 23 16 26 26 F 1.39902 * 109.47063 * 304.60928 * 25 24 23 27 27 F 1.39901 * 109.47279 * 64.60722 * 25 24 23 28 28 H 1.08998 * 109.46723 * 270.27665 * 1 2 3 29 29 H 1.08994 * 109.47669 * 30.27736 * 1 2 3 30 30 H 1.08999 * 109.46726 * 150.28531 * 1 2 3 31 31 H 1.07999 * 120.03639 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.06283 * 0.02562 * 6 5 4 33 33 H 1.08000 * 119.94015 * 179.97438 * 7 6 5 34 34 H 1.08000 * 119.87331 * 180.02562 * 8 7 6 35 35 H 1.09004 * 109.46599 * 60.00242 * 11 10 9 36 36 H 1.08993 * 109.47177 * 180.02562 * 11 10 9 37 37 H 1.08997 * 109.47228 * 300.00661 * 11 10 9 38 38 H 1.08995 * 109.47012 * 59.99456 * 12 10 9 39 39 H 1.08993 * 109.47475 * 179.97438 * 12 10 9 40 40 H 1.09004 * 109.46972 * 300.00105 * 12 10 9 41 41 H 1.08997 * 109.47023 * 59.99687 * 13 10 9 42 42 H 1.08998 * 109.47412 * 179.97438 * 13 10 9 43 43 H 1.09005 * 109.46932 * 300.00009 * 13 10 9 44 44 H 1.08001 * 120.06194 * 180.25173 * 14 9 8 45 45 H 1.07993 * 120.03271 * 180.29569 * 15 4 3 46 46 H 1.09001 * 109.47244 * 224.80974 * 17 16 15 47 47 H 0.96711 * 113.99815 * 55.08894 * 18 17 16 48 48 H 1.08996 * 109.47355 * 184.60605 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1946 0.0000 4 6 3.5897 1.1938 -0.0059 5 6 4.3337 2.4774 -0.0123 6 6 5.7270 2.4780 -0.0123 7 6 6.4140 3.6752 -0.0188 8 6 5.7219 4.8727 -0.0248 9 6 4.3385 4.8780 -0.0186 10 14 3.4124 6.5003 -0.0184 11 6 3.0967 7.0354 -1.7748 12 6 1.7874 6.2877 0.8676 13 6 4.4295 7.7958 0.8521 14 6 3.6414 3.6870 -0.0179 15 6 4.2832 -0.0150 0.0000 16 6 3.5888 -1.2067 0.0058 17 6 4.3378 -2.5144 0.0116 18 8 4.2763 -3.0928 1.3167 19 14 6.1172 -2.2128 -0.4508 20 1 6.7335 -1.2850 0.5314 21 1 6.8552 -3.5014 -0.4457 22 1 6.1811 -1.6116 -1.8072 23 6 2.2006 -1.2028 0.0063 24 8 1.5193 -2.3783 0.0114 25 6 1.1679 -2.9301 -1.2590 26 9 0.4420 -1.9858 -1.9929 27 9 2.3313 -3.2697 -1.9579 28 1 -0.3633 0.0050 1.0277 29 1 -0.3634 0.8874 -0.5181 30 1 -0.3633 -0.8925 -0.5094 31 1 1.6557 2.1299 0.0004 32 1 6.2684 1.5436 -0.0081 33 1 7.4940 3.6769 -0.0184 34 1 6.2635 5.8070 -0.0303 35 1 2.5016 6.2773 -2.2841 36 1 2.5567 7.9822 -1.7746 37 1 4.0474 7.1597 -2.2932 38 1 1.9722 5.9746 1.8952 39 1 1.2473 7.2344 0.8682 40 1 1.1923 5.5297 0.3583 41 1 5.3802 7.9202 0.3337 42 1 3.8894 8.7426 0.8519 43 1 4.6143 7.4827 1.8797 44 1 2.5614 3.6923 -0.0172 45 1 5.3631 -0.0186 0.0003 46 1 3.8855 -3.1954 -0.7094 47 1 3.3773 -3.2080 1.6540 48 1 0.5590 -3.8221 -1.1119 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17541466_12419878.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:58:57 Heat of formation + Delta-G solvation = -170.992107 kcal Electronic energy + Delta-G solvation = -31440.096423 eV Core-core repulsion = 27025.885794 eV Total energy + Delta-G solvation = -4414.210629 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 366.138 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.21967 -48.35931 -41.68318 -40.06166 -38.35927 -37.72239 -34.31106 -33.44492 -31.83694 -30.11820 -29.36571 -28.43745 -28.27239 -28.26639 -27.22818 -26.42745 -24.21697 -23.44867 -21.95863 -21.52728 -20.19512 -19.24530 -18.84472 -18.55645 -18.06486 -17.37889 -17.04498 -16.52837 -16.11477 -15.71885 -15.49403 -15.24378 -15.10262 -15.03563 -14.84255 -14.73248 -14.50301 -14.29563 -14.18137 -14.05941 -14.01141 -13.79680 -13.72148 -13.62779 -13.53723 -13.19640 -13.13420 -13.09010 -12.97168 -12.84504 -12.73898 -12.69392 -12.55835 -12.34668 -12.08393 -11.86354 -11.30643 -11.09694 -10.95887 -10.76273 -10.75085 -10.49528 -9.92898 -9.78964 -9.04149 -0.61833 0.03193 0.36342 0.63821 1.04004 1.34959 1.36763 1.79372 1.81989 1.82239 2.02198 2.11100 2.46848 2.60213 2.66003 3.02225 3.31334 3.43766 3.48240 3.62752 3.64205 3.81408 3.91311 4.04180 4.10040 4.11510 4.21659 4.29476 4.40525 4.47624 4.57895 4.66944 4.72928 4.84023 4.85138 4.86732 4.89019 4.89818 4.90496 4.91493 4.94165 5.08770 5.14586 5.16774 5.25021 5.30815 5.47182 5.53076 5.59962 5.61498 5.68413 5.70724 5.93409 6.07353 6.53647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.076 4.076 3 C -0.108 4.108 4 C -0.028 4.028 5 C -0.082 4.082 6 C -0.118 4.118 7 C -0.139 4.139 8 C -0.090 4.090 9 C -0.381 4.381 10 Si 1.126 2.874 11 C -0.463 4.463 12 C -0.462 4.462 13 C -0.462 4.462 14 C -0.082 4.082 15 C -0.132 4.132 16 C -0.112 4.112 17 C -0.099 4.099 18 O -0.545 6.545 19 Si 1.015 2.985 20 H -0.256 1.256 21 H -0.261 1.261 22 H -0.244 1.244 23 C 0.061 3.939 24 O -0.329 6.329 25 C 0.397 3.603 26 F -0.208 7.208 27 F -0.213 7.213 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.157 0.843 32 H 0.121 0.879 33 H 0.136 0.864 34 H 0.143 0.857 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.141 0.859 45 H 0.134 0.866 46 H 0.093 0.907 47 H 0.379 0.621 48 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.436 2.311 -0.480 4.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.077 4.077 3 C -0.126 4.126 4 C -0.028 4.028 5 C -0.082 4.082 6 C -0.136 4.136 7 C -0.157 4.157 8 C -0.108 4.108 9 C -0.420 4.420 10 Si 1.313 2.687 11 C -0.569 4.569 12 C -0.570 4.570 13 C -0.569 4.569 14 C -0.100 4.100 15 C -0.150 4.150 16 C -0.113 4.113 17 C -0.207 4.207 18 O -0.352 6.352 19 Si 0.836 3.164 20 H -0.181 1.181 21 H -0.185 1.185 22 H -0.167 1.167 23 C 0.018 3.982 24 O -0.248 6.248 25 C 0.308 3.692 26 F -0.190 7.190 27 F -0.195 7.195 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.174 0.826 32 H 0.139 0.861 33 H 0.154 0.846 34 H 0.160 0.840 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.159 0.841 45 H 0.151 0.849 46 H 0.110 0.890 47 H 0.229 0.771 48 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -1.958 2.285 -0.671 3.083 hybrid contribution -0.655 -0.413 -0.055 0.776 sum -2.612 1.872 -0.726 3.295 Atomic orbital electron populations 1.20997 0.88414 1.04657 1.03729 1.20383 0.98236 0.91583 0.97473 1.21324 0.92662 0.98539 1.00025 1.19007 0.93562 0.92191 0.98016 1.18980 0.93436 0.92309 1.03494 1.21445 0.93645 0.99001 0.99501 1.21466 1.00920 0.92625 1.00703 1.21538 0.94856 0.98356 0.96056 1.28006 1.00145 1.12345 1.01504 0.77199 0.64624 0.60885 0.66018 1.26290 1.04970 1.06000 1.19688 1.26266 1.17119 1.05235 1.08333 1.26269 1.09761 1.12674 1.08194 1.21443 1.00631 0.91182 0.96731 1.21180 1.00391 0.91374 1.02052 1.20513 0.93485 0.96454 1.00866 1.25523 1.13605 0.92276 0.89337 1.86658 1.34000 1.83520 1.30992 0.84453 0.72131 0.80190 0.79659 1.18058 1.18497 1.16681 1.18351 0.89024 0.85028 1.05792 1.86617 1.73252 1.36282 1.28693 1.24491 0.79608 0.90251 0.74807 1.93031 1.77671 1.69260 1.79062 1.92997 1.53393 1.92428 1.80654 0.89687 0.89831 0.90304 0.82586 0.86107 0.84587 0.83977 0.91429 0.90590 0.91424 0.91250 0.90503 0.90768 0.90859 0.90599 0.91273 0.84139 0.84910 0.88966 0.77144 0.75847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.17 9.56 71.24 0.68 0.85 16 2 C -0.08 -0.24 5.66 -19.80 -0.11 -0.35 16 3 C -0.11 -0.31 9.07 22.47 0.20 -0.11 16 4 C -0.03 -0.16 5.88 -20.03 -0.12 -0.28 16 5 C -0.08 -0.43 5.88 -20.04 -0.12 -0.55 16 6 C -0.12 -0.61 9.43 22.48 0.21 -0.39 16 7 C -0.14 -0.36 10.03 22.24 0.22 -0.14 16 8 C -0.09 -0.04 9.29 22.31 0.21 0.17 16 9 C -0.38 0.19 4.59 22.24 0.10 0.29 16 10 Si 1.13 -6.82 12.31 68.60 0.84 -5.97 16 11 C -0.46 1.80 8.65 113.37 0.98 2.78 16 12 C -0.46 2.33 8.53 113.37 0.97 3.30 16 13 C -0.46 2.19 8.53 113.37 0.97 3.16 16 14 C -0.08 -0.13 8.67 22.49 0.19 0.06 16 15 C -0.13 -0.91 8.03 22.47 0.18 -0.73 16 16 C -0.11 -0.70 5.16 -19.80 -0.10 -0.81 16 17 C -0.10 -0.51 2.31 71.24 0.16 -0.35 16 18 O -0.54 -3.13 12.68 -148.98 -1.89 -5.02 16 19 Si 1.02 5.15 25.75 68.60 1.77 6.92 16 20 H -0.26 -1.48 6.72 99.48 0.67 -0.81 16 21 H -0.26 -1.66 7.11 99.48 0.71 -0.95 16 22 H -0.24 -1.06 7.11 99.48 0.71 -0.36 16 23 C 0.06 0.28 5.20 22.56 0.12 0.40 16 24 O -0.33 -0.24 8.56 -92.05 -0.79 -1.02 16 25 C 0.40 -1.12 6.25 113.37 0.71 -0.41 16 26 F -0.21 -0.16 14.37 44.97 0.65 0.48 16 27 F -0.21 -0.35 14.57 44.97 0.66 0.31 16 28 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 29 H 0.08 -0.31 8.09 -2.39 -0.02 -0.33 16 30 H 0.08 -0.09 5.07 -2.39 -0.01 -0.11 16 31 H 0.16 -0.35 6.20 -2.91 -0.02 -0.37 16 32 H 0.12 0.45 6.20 -2.91 -0.02 0.44 16 33 H 0.14 -0.15 8.06 -2.91 -0.02 -0.18 16 34 H 0.14 -0.61 7.41 -2.91 -0.02 -0.63 16 35 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 36 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 37 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 38 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 39 H 0.08 -0.42 7.96 -2.39 -0.02 -0.44 16 40 H 0.07 -0.43 7.68 -2.39 -0.02 -0.45 16 41 H 0.07 -0.38 7.67 -2.39 -0.02 -0.40 16 42 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 43 H 0.07 -0.27 7.96 -2.38 -0.02 -0.29 16 44 H 0.14 -0.43 5.57 -2.91 -0.02 -0.44 16 45 H 0.13 0.75 3.03 -2.91 -0.01 0.74 16 46 H 0.09 0.33 5.03 -2.39 -0.01 0.32 16 47 H 0.38 0.36 8.50 -74.05 -0.63 -0.27 16 48 H 0.23 -2.93 8.14 -2.39 -0.02 -2.95 16 Total: 0.00 -14.47 390.42 7.79 -6.67 By element: Atomic # 1 Polarization: -10.36 SS G_CDS: 1.09 Total: -9.26 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 5.46 Total: 6.90 kcal Atomic # 8 Polarization: -3.37 SS G_CDS: -2.68 Total: -6.05 kcal Atomic # 9 Polarization: -0.51 SS G_CDS: 1.30 Total: 0.79 kcal Atomic # 14 Polarization: -1.66 SS G_CDS: 2.61 Total: 0.95 kcal Total: -14.47 7.79 -6.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17541466_12419878.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.317 kcal (2) G-P(sol) polarization free energy of solvation -14.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds