Wall clock time and date at job start Mon Mar 8 2021 07:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86300 * 109.46896 * 2 1 4 4 C 1.86303 * 109.46933 * 240.00400 * 2 1 3 5 5 C 1.86793 * 109.47345 * 120.00294 * 2 1 3 6 6 C 1.38305 * 119.93922 * 89.99627 * 5 2 1 7 7 C 1.38355 * 120.25225 * 179.74465 * 6 5 2 8 8 C 1.37988 * 120.12394 * 0.26102 * 7 6 5 9 9 C 1.39394 * 119.87433 * 359.97438 * 8 7 6 10 10 C 1.48326 * 120.12360 * 179.97438 * 9 8 7 11 11 C 1.39882 * 119.80033 * 180.02562 * 10 9 8 12 12 C 1.36392 * 120.40192 * 179.97438 * 11 10 9 13 13 C 1.39734 * 119.93190 * 359.97438 * 12 11 10 14 14 C 1.46440 * 133.86036 * 180.02562 * 13 12 11 15 15 C 1.50704 * 126.48345 * 359.96818 * 14 13 12 16 16 O 1.42894 * 109.47523 * 285.00462 * 15 14 13 17 17 Si 1.86301 * 109.46886 * 165.00275 * 15 14 13 18 18 H 1.48506 * 109.46890 * 60.00642 * 17 15 14 19 19 H 1.48500 * 109.47139 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47597 * 300.00250 * 17 15 14 21 21 C 1.34286 * 107.03235 * 180.02562 * 14 13 12 22 22 N 1.36817 * 109.95130 * 359.97438 * 21 14 13 23 23 C 1.37770 * 109.85303 * 0.02562 * 22 21 14 24 24 C 1.38847 * 133.39216 * 180.27486 * 23 22 21 25 25 C 1.38038 * 119.93818 * 270.25640 * 5 2 1 26 26 H 1.08996 * 109.47227 * 299.99489 * 1 2 3 27 27 H 1.08994 * 109.47605 * 59.99672 * 1 2 3 28 28 H 1.09002 * 109.46982 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46987 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.47262 * 300.00538 * 3 2 1 31 31 H 1.09005 * 109.46900 * 60.00464 * 3 2 1 32 32 H 1.08997 * 109.46736 * 299.99477 * 4 2 1 33 33 H 1.08994 * 109.47300 * 60.00059 * 4 2 1 34 34 H 1.08999 * 109.46904 * 179.97438 * 4 2 1 35 35 H 1.08002 * 119.87594 * 0.03006 * 6 5 2 36 36 H 1.08003 * 119.93878 * 180.27869 * 7 6 5 37 37 H 1.08002 * 120.05981 * 179.97438 * 8 7 6 38 38 H 1.08005 * 119.79661 * 359.97333 * 11 10 9 39 39 H 1.08003 * 120.03531 * 179.97438 * 12 11 10 40 40 H 1.08996 * 109.47023 * 45.01054 * 15 14 13 41 41 H 0.96695 * 113.99992 * 300.00413 * 16 15 14 42 42 H 1.07999 * 125.03045 * 179.97438 * 21 14 13 43 43 H 0.96990 * 125.07119 * 180.02562 * 22 21 14 44 44 H 1.07994 * 120.15943 * 359.94757 * 24 23 22 45 45 H 1.07996 * 120.06185 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8781 -1.5212 5 6 2.4857 -0.8806 1.5251 6 6 2.7158 -2.2439 1.4894 7 6 3.1820 -2.9018 2.6137 8 6 3.4150 -2.2011 3.7793 9 6 3.1803 -0.8278 3.8226 10 6 3.4284 -0.0692 5.0728 11 6 3.1900 1.3087 5.1088 12 6 3.4134 2.0182 6.2521 13 6 3.8828 1.3673 7.3961 14 6 4.2185 1.8116 8.7505 15 6 4.1271 3.2195 9.2802 16 8 5.2090 3.9951 8.7607 17 14 4.2212 3.1903 11.1406 18 1 5.5107 2.5858 11.5616 19 1 4.1318 4.5776 11.6626 20 1 3.0969 2.3843 11.6806 21 6 4.6244 0.7273 9.4308 22 7 4.5757 -0.3759 8.6230 23 6 4.1261 -0.0193 7.3705 24 6 3.8910 -0.7324 6.2026 25 6 2.7103 -0.1704 2.6872 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.5739 1.7565 -0.0005 30 1 2.1205 2.2703 -0.8899 31 1 2.1206 2.2703 0.8901 32 1 2.1207 -1.9058 -1.5212 33 1 2.1207 -0.3643 -2.4111 34 1 3.5740 -0.8777 -1.5215 35 1 2.5351 -2.7963 0.5791 36 1 3.3642 -3.9658 2.5788 37 1 3.7786 -2.7158 4.6564 38 1 2.8269 1.8138 4.2259 39 1 3.2278 3.0819 6.2732 40 1 3.1807 3.6632 8.9712 41 1 6.0838 3.6576 8.9968 42 1 4.9424 0.7261 10.4629 43 1 4.8211 -1.2749 8.8921 44 1 4.0698 -1.7970 6.1717 45 1 2.5268 0.8935 2.7151 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17541466_15137872.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:00:44 Heat of formation + Delta-G solvation = 0.081982 kcal Electronic energy + Delta-G solvation = -24049.684974 eV Core-core repulsion = 20734.142244 eV Total energy + Delta-G solvation = -3315.542729 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.29603 -40.12064 -37.89941 -37.43221 -33.51020 -32.34328 -31.83894 -30.41042 -29.50202 -29.10165 -28.37713 -28.28717 -26.37697 -24.48294 -23.96179 -22.33065 -21.48681 -20.69000 -19.11420 -17.97015 -17.79414 -17.11147 -16.24373 -15.95814 -15.90970 -15.60975 -15.28397 -15.11891 -14.81629 -14.62517 -14.49415 -14.25642 -14.14645 -14.09696 -13.90135 -13.74390 -13.71948 -13.26424 -13.23823 -13.07337 -12.91604 -12.63195 -12.53246 -12.42336 -12.26184 -12.08971 -11.81035 -11.57666 -11.04251 -10.87430 -10.73761 -10.71153 -10.27312 -9.90345 -9.67950 -8.91432 -8.43592 -0.23011 0.47058 0.51748 1.03055 1.19435 1.41056 1.51122 1.64881 1.75018 1.88415 1.93409 2.01647 2.10418 2.58303 2.85668 3.28263 3.62623 3.69315 3.77768 3.84130 3.96512 4.14438 4.15760 4.37500 4.43961 4.47442 4.51070 4.64871 4.71392 4.73379 4.74552 4.77467 4.78705 4.79185 4.79972 4.80856 4.87675 5.04823 5.15105 5.20795 5.40370 5.46639 5.51997 5.57232 5.58607 5.62792 5.66275 5.70895 5.79754 5.91638 6.16559 6.22650 6.49805 6.68491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.058 2.942 3 C -0.450 4.450 4 C -0.449 4.449 5 C -0.369 4.369 6 C -0.087 4.087 7 C -0.129 4.129 8 C -0.102 4.102 9 C -0.054 4.054 10 C -0.022 4.022 11 C -0.135 4.135 12 C -0.061 4.061 13 C -0.086 4.086 14 C -0.202 4.202 15 C -0.044 4.044 16 O -0.540 6.540 17 Si 0.947 3.053 18 H -0.254 1.254 19 H -0.251 1.251 20 H -0.251 1.251 21 C 0.055 3.945 22 N -0.590 5.590 23 C 0.098 3.902 24 C -0.123 4.123 25 C -0.076 4.076 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.114 0.886 41 H 0.374 0.626 42 H 0.169 0.831 43 H 0.418 0.582 44 H 0.123 0.877 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.348 -1.724 0.628 1.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.250 2.750 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.411 4.411 6 C -0.105 4.105 7 C -0.147 4.147 8 C -0.120 4.120 9 C -0.054 4.054 10 C -0.023 4.023 11 C -0.154 4.154 12 C -0.080 4.080 13 C -0.091 4.091 14 C -0.210 4.210 15 C -0.155 4.155 16 O -0.345 6.345 17 Si 0.770 3.230 18 H -0.178 1.178 19 H -0.174 1.174 20 H -0.174 1.174 21 C -0.072 4.072 22 N -0.193 5.193 23 C -0.009 4.009 24 C -0.143 4.143 25 C -0.094 4.094 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.131 0.869 41 H 0.220 0.780 42 H 0.187 0.813 43 H 0.256 0.744 44 H 0.141 0.859 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.043 -1.526 1.418 2.084 hybrid contribution 0.648 -1.100 0.148 1.285 sum 0.604 -2.626 1.567 3.117 Atomic orbital electron populations 1.26123 1.20478 1.04559 1.04491 0.78191 0.66870 0.66185 0.63743 1.26134 1.06515 1.18517 1.04581 1.26130 1.06463 1.08024 1.15069 1.27333 1.04283 0.99526 1.09924 1.21141 0.96974 0.94589 0.97825 1.21178 1.00310 0.99848 0.93412 1.21240 0.99258 0.93436 0.98080 1.18832 1.00532 0.93204 0.92802 1.18410 0.99023 0.93045 0.91802 1.20723 1.03145 0.93073 0.98483 1.20236 0.97142 0.99784 0.90835 1.19016 1.04194 0.91862 0.93994 1.20690 1.11089 0.95401 0.93817 1.24269 0.93593 0.88153 1.09528 1.86516 1.16425 1.53019 1.78515 0.85789 0.81289 0.81619 0.74350 1.17776 1.17434 1.17444 1.21682 1.03147 0.85885 0.96508 1.41710 1.58306 1.10134 1.09133 1.18115 1.01911 0.94289 0.86572 1.20008 1.04851 0.99191 0.90269 1.21172 0.96707 0.99641 0.91900 0.91131 0.91064 0.91197 0.91006 0.90948 0.91138 0.91198 0.90972 0.91055 0.86187 0.86188 0.86184 0.85518 0.85472 0.86855 0.77960 0.81348 0.74443 0.85917 0.85803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.49 8.65 101.05 0.87 1.36 16 2 Si 1.06 -2.16 12.31 -169.99 -2.09 -4.25 16 3 C -0.45 0.61 8.53 101.05 0.86 1.48 16 4 C -0.45 0.65 8.53 101.05 0.86 1.52 16 5 C -0.37 -0.17 4.59 -39.63 -0.18 -0.35 16 6 C -0.09 -0.07 9.29 -39.51 -0.37 -0.43 16 7 C -0.13 -0.15 10.03 -39.63 -0.40 -0.55 16 8 C -0.10 -0.18 9.42 -39.24 -0.37 -0.55 16 9 C -0.05 -0.13 5.88 -104.90 -0.62 -0.75 16 10 C -0.02 -0.06 5.88 -104.87 -0.62 -0.67 16 11 C -0.14 -0.30 9.35 -39.63 -0.37 -0.67 16 12 C -0.06 -0.16 10.04 -39.69 -0.40 -0.56 16 13 C -0.09 -0.26 6.35 -105.07 -0.67 -0.93 16 14 C -0.20 -0.27 5.57 -102.71 -0.57 -0.84 16 15 C -0.04 -0.01 3.06 36.01 0.11 0.10 16 16 O -0.54 -0.56 12.88 -35.23 -0.45 -1.02 16 17 Si 0.95 -0.84 26.08 -169.99 -4.43 -5.28 16 18 H -0.25 0.34 7.03 56.52 0.40 0.74 16 19 H -0.25 -0.18 7.11 56.52 0.40 0.22 16 20 H -0.25 0.03 7.11 56.52 0.40 0.43 16 21 C 0.06 -0.01 10.43 -16.72 -0.17 -0.19 16 22 N -0.59 0.08 6.07 -10.66 -0.06 0.02 16 23 C 0.10 0.22 7.26 -84.00 -0.61 -0.39 16 24 C -0.12 -0.26 9.44 -39.10 -0.37 -0.63 16 25 C -0.08 -0.11 8.66 -39.24 -0.34 -0.45 16 26 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 27 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 28 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 29 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 30 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 31 H 0.07 -0.11 7.68 -51.93 -0.40 -0.51 16 32 H 0.07 -0.11 7.67 -51.93 -0.40 -0.51 16 33 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 34 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 35 H 0.12 -0.15 7.40 -52.49 -0.39 -0.53 16 36 H 0.12 -0.07 8.06 -52.48 -0.42 -0.49 16 37 H 0.12 0.02 6.18 -52.49 -0.32 -0.30 16 38 H 0.13 0.04 6.16 -52.48 -0.32 -0.28 16 39 H 0.13 0.18 8.06 -52.48 -0.42 -0.25 16 40 H 0.11 -0.02 7.96 -51.93 -0.41 -0.43 16 41 H 0.37 -0.81 8.70 45.56 0.40 -0.41 16 42 H 0.17 -0.50 6.29 -52.49 -0.33 -0.83 16 43 H 0.42 -1.27 8.96 -40.82 -0.37 -1.64 16 44 H 0.12 0.03 6.17 -52.49 -0.32 -0.29 16 45 H 0.12 -0.04 5.54 -52.49 -0.29 -0.33 16 LS Contribution 370.13 15.07 5.58 5.58 Total: 0.00 -6.85 370.13 -10.51 -17.36 By element: Atomic # 1 Polarization: -3.23 SS G_CDS: -5.70 Total: -8.93 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -3.34 Total: -3.49 kcal Atomic # 7 Polarization: 0.08 SS G_CDS: -0.06 Total: 0.02 kcal Atomic # 8 Polarization: -0.56 SS G_CDS: -0.45 Total: -1.02 kcal Atomic # 14 Polarization: -3.00 SS G_CDS: -6.53 Total: -9.52 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -6.85 -10.51 -17.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17541466_15137872.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.443 kcal (2) G-P(sol) polarization free energy of solvation -6.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds