Wall clock time and date at job start Mon Mar 8 2021 07:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86302 * 109.47395 * 2 1 4 4 C 1.86305 * 109.47397 * 239.99941 * 2 1 3 5 5 C 1.86800 * 109.47062 * 120.00220 * 2 1 3 6 6 C 1.38318 * 119.93606 * 89.99902 * 5 2 1 7 7 C 1.38370 * 120.26985 * 180.02562 * 6 5 2 8 8 C 1.37958 * 120.13394 * 359.95456 * 7 6 5 9 9 C 1.39486 * 119.86441 * 0.02562 * 8 7 6 10 10 C 1.48141 * 120.13092 * 180.02562 * 9 8 7 11 11 C 1.41508 * 120.34703 * 309.99108 * 10 9 8 12 12 C 1.40242 * 121.25545 * 0.03079 * 11 10 9 13 13 C 1.36203 * 119.68231 * 179.97438 * 12 11 10 14 14 C 1.39334 * 120.94089 * 359.97438 * 13 12 11 15 15 C 1.36111 * 120.96691 * 0.06998 * 14 13 12 16 16 C 1.40582 * 119.65660 * 359.90481 * 15 14 13 17 17 C 1.40532 * 121.18609 * 180.08729 * 16 15 14 18 18 C 1.36225 * 120.05791 * 179.97438 * 17 16 15 19 19 C 1.50706 * 119.42103 * 179.97438 * 18 17 16 20 20 O 1.42905 * 109.46817 * 120.00412 * 19 18 17 21 21 Si 1.86296 * 109.47325 * 0.02562 * 19 18 17 22 22 H 1.48500 * 109.47231 * 59.99731 * 21 19 18 23 23 H 1.48496 * 109.46942 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47063 * 299.99817 * 21 19 18 25 25 C 1.38363 * 120.35088 * 130.21261 * 10 9 8 26 26 C 1.38013 * 119.93134 * 270.25424 * 5 2 1 27 27 H 1.09001 * 109.47104 * 300.00082 * 1 2 3 28 28 H 1.09001 * 109.46689 * 59.99649 * 1 2 3 29 29 H 1.08996 * 109.47336 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47091 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46995 * 299.99996 * 3 2 1 32 32 H 1.09001 * 109.47061 * 59.99891 * 3 2 1 33 33 H 1.09005 * 109.46592 * 300.00353 * 4 2 1 34 34 H 1.08999 * 109.47003 * 59.99998 * 4 2 1 35 35 H 1.08993 * 109.47247 * 180.02562 * 4 2 1 36 36 H 1.08004 * 119.86671 * 359.97438 * 6 5 2 37 37 H 1.08001 * 119.92932 * 179.97438 * 7 6 5 38 38 H 1.08000 * 120.06782 * 180.02562 * 8 7 6 39 39 H 1.07996 * 120.15986 * 359.95792 * 12 11 10 40 40 H 1.08003 * 119.53058 * 180.02562 * 13 12 11 41 41 H 1.08007 * 119.51358 * 180.02562 * 14 13 12 42 42 H 1.07993 * 120.17513 * 179.97438 * 15 14 13 43 43 H 1.07990 * 119.97115 * 0.02562 * 17 16 15 44 44 H 1.08998 * 109.47012 * 239.99635 * 19 18 17 45 45 H 0.96696 * 113.99586 * 299.99246 * 20 19 18 46 46 H 1.07996 * 119.65864 * 0.03154 * 25 10 9 47 47 H 1.07997 * 120.07080 * 0.02562 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5252 6 6 2.7157 -2.2441 1.4894 7 6 3.1764 -2.9035 2.6153 8 6 3.4100 -2.2034 3.7809 9 6 3.1802 -0.8283 3.8231 10 6 3.4296 -0.0706 5.0714 11 6 2.8941 -0.5223 6.3010 12 6 2.1198 -1.6894 6.3725 13 6 1.6206 -2.0951 7.5730 14 6 1.8682 -1.3669 8.7348 15 6 2.6146 -0.2292 8.7025 16 6 3.1466 0.2194 7.4810 17 6 3.9231 1.3886 7.4109 18 6 4.4277 1.8019 6.2150 19 6 5.2581 3.0582 6.1563 20 8 6.5621 2.7445 5.6631 21 14 5.3998 3.7893 7.8640 22 1 6.0494 2.8084 8.7701 23 1 6.2175 5.0275 7.8059 24 1 4.0447 4.1152 8.3769 25 6 4.1847 1.0885 5.0468 26 6 2.7101 -0.1704 2.6870 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.5741 1.7564 0.0005 31 1 2.1207 2.2703 -0.8900 32 1 2.1207 2.2703 0.8900 33 1 2.1206 -1.9059 -1.5211 34 1 2.1208 -0.3644 -2.4111 35 1 3.5740 -0.8786 -1.5209 36 1 2.5342 -2.7965 0.5792 37 1 3.3538 -3.9683 2.5813 38 1 3.7699 -2.7191 4.6589 39 1 1.9201 -2.2636 5.4799 40 1 1.0249 -2.9945 7.6253 41 1 1.4613 -1.7099 9.6747 42 1 2.7983 0.3255 9.6107 43 1 4.1206 1.9594 8.3061 44 1 4.7815 3.7780 5.4909 45 1 7.0457 2.1081 6.2072 46 1 4.5928 1.4407 4.1109 47 1 2.5259 0.8934 2.7152 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17541466_15738306.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:03:17 Heat of formation + Delta-G solvation = -14.973972 kcal Electronic energy + Delta-G solvation = -25999.981677 eV Core-core repulsion = 22620.985843 eV Total energy + Delta-G solvation = -3378.995834 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 336.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.69016 -39.69464 -38.67059 -36.70213 -34.60434 -31.97503 -31.78464 -31.18392 -29.83106 -29.48876 -28.40504 -28.39807 -26.80177 -24.77940 -23.68753 -23.41389 -22.64841 -21.42194 -18.77992 -18.34999 -17.84260 -17.36989 -16.97594 -16.24595 -16.09821 -15.83955 -15.49085 -15.31060 -14.86644 -14.75646 -14.54715 -14.36378 -14.28044 -14.14758 -14.07342 -13.93090 -13.85745 -13.46886 -13.28928 -13.21996 -13.13518 -13.07409 -12.85268 -12.62448 -12.32483 -12.21580 -12.17251 -11.97933 -11.72829 -11.59613 -11.10409 -10.96597 -10.89798 -10.74323 -10.44799 -9.73460 -9.67281 -9.52790 -8.64389 -0.60535 0.02600 0.33720 0.48945 1.09805 1.12555 1.40016 1.47566 1.71349 1.85586 1.87720 1.92907 2.01091 2.55231 2.90785 3.13690 3.40440 3.48287 3.61025 3.83613 3.95105 4.03795 4.08798 4.11203 4.21983 4.34377 4.35417 4.42489 4.49445 4.55141 4.63347 4.70657 4.71349 4.73721 4.75635 4.76412 4.76910 4.77922 4.90864 4.94224 5.09114 5.14437 5.18850 5.28563 5.40978 5.44668 5.49237 5.53475 5.54827 5.57238 5.58466 5.62853 5.71323 5.84009 6.02257 6.12811 6.51904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.058 2.942 3 C -0.450 4.450 4 C -0.449 4.449 5 C -0.369 4.369 6 C -0.084 4.084 7 C -0.130 4.130 8 C -0.097 4.097 9 C -0.059 4.059 10 C -0.031 4.031 11 C -0.036 4.036 12 C -0.109 4.109 13 C -0.114 4.114 14 C -0.113 4.113 15 C -0.108 4.108 16 C -0.045 4.045 17 C -0.112 4.112 18 C -0.108 4.108 19 C -0.082 4.082 20 O -0.537 6.537 21 Si 0.946 3.054 22 H -0.250 1.250 23 H -0.252 1.252 24 H -0.249 1.249 25 C -0.081 4.081 26 C -0.071 4.071 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.132 0.868 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.120 0.880 45 H 0.377 0.623 46 H 0.132 0.868 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.975 -0.848 -0.056 1.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.250 2.750 3 C -0.558 4.558 4 C -0.557 4.557 5 C -0.411 4.411 6 C -0.102 4.102 7 C -0.148 4.148 8 C -0.115 4.115 9 C -0.059 4.059 10 C -0.031 4.031 11 C -0.036 4.036 12 C -0.127 4.127 13 C -0.132 4.132 14 C -0.131 4.131 15 C -0.126 4.126 16 C -0.045 4.045 17 C -0.129 4.129 18 C -0.109 4.109 19 C -0.192 4.192 20 O -0.342 6.342 21 Si 0.769 3.231 22 H -0.174 1.174 23 H -0.176 1.176 24 H -0.173 1.173 25 C -0.099 4.099 26 C -0.089 4.089 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.150 0.850 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.146 0.854 43 H 0.142 0.858 44 H 0.138 0.862 45 H 0.224 0.776 46 H 0.150 0.850 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.062 -0.098 0.370 1.128 hybrid contribution 0.097 -0.775 0.267 0.825 sum -0.965 -0.873 0.636 1.448 Atomic orbital electron populations 1.26124 1.20481 1.04567 1.04491 0.78199 0.66876 0.66191 0.63745 1.26136 1.06525 1.18533 1.04573 1.26128 1.06488 1.08020 1.15035 1.27333 1.04336 0.99560 1.09851 1.21165 0.96631 0.94537 0.97839 1.21191 1.00374 0.99956 0.93277 1.21299 0.98906 0.93111 0.98171 1.18759 1.01323 0.93314 0.92534 1.18863 0.97818 0.94945 0.91511 1.17981 0.98102 0.95485 0.92028 1.21219 0.97109 0.95706 0.98631 1.20954 0.99620 1.00051 0.92567 1.20914 0.98320 0.95193 0.98638 1.21062 0.97880 0.97024 0.96637 1.17892 0.98338 0.95046 0.93203 1.20915 0.98475 0.96275 0.97284 1.19916 0.99659 0.97855 0.93431 1.25046 0.84633 0.97434 1.12105 1.86518 1.26355 1.66454 1.54842 0.85726 0.81637 0.80684 0.75078 1.17380 1.17613 1.17328 1.20983 0.97090 0.93624 0.98191 1.21162 0.96573 0.99497 0.91664 0.91176 0.91036 0.91173 0.90987 0.90933 0.91182 0.91180 0.90946 0.91020 0.86093 0.86018 0.85968 0.84993 0.85748 0.85695 0.85394 0.85833 0.86236 0.77612 0.85028 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.53 8.65 101.05 0.87 1.40 16 2 Si 1.06 -2.30 12.31 -169.99 -2.09 -4.40 16 3 C -0.45 0.62 8.53 101.05 0.86 1.49 16 4 C -0.45 0.73 8.53 101.05 0.86 1.59 16 5 C -0.37 -0.03 4.59 -39.63 -0.18 -0.22 16 6 C -0.08 -0.02 9.29 -39.50 -0.37 -0.39 16 7 C -0.13 -0.09 10.03 -39.64 -0.40 -0.49 16 8 C -0.10 -0.14 7.61 -39.22 -0.30 -0.44 16 9 C -0.06 -0.12 5.04 -104.92 -0.53 -0.65 16 10 C -0.03 -0.08 5.50 -104.54 -0.58 -0.65 16 11 C -0.04 -0.10 5.74 -106.60 -0.61 -0.71 16 12 C -0.11 -0.20 8.59 -39.56 -0.34 -0.54 16 13 C -0.11 -0.10 9.95 -39.91 -0.40 -0.50 16 14 C -0.11 -0.07 9.95 -39.94 -0.40 -0.47 16 15 C -0.11 -0.13 9.77 -39.46 -0.39 -0.51 16 16 C -0.04 -0.11 5.74 -106.85 -0.61 -0.72 16 17 C -0.11 -0.16 8.37 -39.44 -0.33 -0.49 16 18 C -0.11 -0.12 5.36 -105.05 -0.56 -0.69 16 19 C -0.08 0.01 2.80 36.01 0.10 0.11 16 20 O -0.54 -0.28 12.76 -35.23 -0.45 -0.73 16 21 Si 0.95 -0.37 25.02 -169.99 -4.25 -4.63 16 22 H -0.25 0.06 7.11 56.52 0.40 0.46 16 23 H -0.25 -0.24 7.11 56.52 0.40 0.16 16 24 H -0.25 -0.02 7.11 56.52 0.40 0.38 16 25 C -0.08 -0.14 9.02 -39.24 -0.35 -0.50 16 26 C -0.07 -0.08 8.75 -39.22 -0.34 -0.42 16 27 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 28 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 29 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 30 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 31 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 32 H 0.07 -0.10 7.68 -51.93 -0.40 -0.50 16 33 H 0.07 -0.13 7.67 -51.93 -0.40 -0.53 16 34 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 35 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 36 H 0.12 -0.20 7.40 -52.48 -0.39 -0.59 16 37 H 0.12 -0.12 8.06 -52.49 -0.42 -0.54 16 38 H 0.12 0.10 7.26 -52.49 -0.38 -0.28 16 39 H 0.13 0.14 5.59 -52.49 -0.29 -0.15 16 40 H 0.12 -0.13 8.06 -52.48 -0.42 -0.55 16 41 H 0.13 -0.18 8.06 -52.48 -0.42 -0.60 16 42 H 0.13 -0.11 8.06 -52.49 -0.42 -0.53 16 43 H 0.12 -0.01 4.74 -52.49 -0.25 -0.26 16 44 H 0.12 -0.13 7.96 -51.93 -0.41 -0.54 16 45 H 0.38 -0.93 8.70 45.56 0.40 -0.53 16 46 H 0.13 0.15 8.03 -52.49 -0.42 -0.27 16 47 H 0.12 -0.02 7.41 -52.49 -0.39 -0.40 16 LS Contribution 383.63 15.07 5.78 5.78 Total: 0.00 -5.25 383.63 -11.32 -16.57 By element: Atomic # 1 Polarization: -2.50 SS G_CDS: -6.32 Total: -8.82 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -3.98 Total: -3.78 kcal Atomic # 8 Polarization: -0.28 SS G_CDS: -0.45 Total: -0.73 kcal Atomic # 14 Polarization: -2.68 SS G_CDS: -6.35 Total: -9.02 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -5.25 -11.32 -16.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17541466_15738306.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.596 kcal (2) G-P(sol) polarization free energy of solvation -5.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds