Wall clock time and date at job start Mon Mar 8 2021 07:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86302 * 109.47395 * 2 1 4 4 C 1.86305 * 109.47397 * 239.99941 * 2 1 3 5 5 C 1.86800 * 109.47062 * 120.00220 * 2 1 3 6 6 C 1.38318 * 119.93606 * 89.99902 * 5 2 1 7 7 C 1.38370 * 120.26985 * 180.02562 * 6 5 2 8 8 C 1.37958 * 120.13394 * 359.95456 * 7 6 5 9 9 C 1.39486 * 119.86441 * 0.02562 * 8 7 6 10 10 C 1.48141 * 120.13092 * 180.02562 * 9 8 7 11 11 C 1.41508 * 120.34703 * 309.99108 * 10 9 8 12 12 C 1.40242 * 121.25545 * 0.03079 * 11 10 9 13 13 C 1.36203 * 119.68231 * 179.97438 * 12 11 10 14 14 C 1.39334 * 120.94089 * 359.97438 * 13 12 11 15 15 C 1.36111 * 120.96691 * 0.06998 * 14 13 12 16 16 C 1.40582 * 119.65660 * 359.90481 * 15 14 13 17 17 C 1.40532 * 121.18609 * 180.08729 * 16 15 14 18 18 C 1.36225 * 120.05791 * 179.97438 * 17 16 15 19 19 C 1.50706 * 119.42103 * 179.97438 * 18 17 16 20 20 O 1.42905 * 109.46817 * 120.00412 * 19 18 17 21 21 Si 1.86296 * 109.47325 * 0.02562 * 19 18 17 22 22 H 1.48500 * 109.47231 * 59.99731 * 21 19 18 23 23 H 1.48496 * 109.46942 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47063 * 299.99817 * 21 19 18 25 25 C 1.38363 * 120.35088 * 130.21261 * 10 9 8 26 26 C 1.38013 * 119.93134 * 270.25424 * 5 2 1 27 27 H 1.09001 * 109.47104 * 300.00082 * 1 2 3 28 28 H 1.09001 * 109.46689 * 59.99649 * 1 2 3 29 29 H 1.08996 * 109.47336 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47091 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46995 * 299.99996 * 3 2 1 32 32 H 1.09001 * 109.47061 * 59.99891 * 3 2 1 33 33 H 1.09005 * 109.46592 * 300.00353 * 4 2 1 34 34 H 1.08999 * 109.47003 * 59.99998 * 4 2 1 35 35 H 1.08993 * 109.47247 * 180.02562 * 4 2 1 36 36 H 1.08004 * 119.86671 * 359.97438 * 6 5 2 37 37 H 1.08001 * 119.92932 * 179.97438 * 7 6 5 38 38 H 1.08000 * 120.06782 * 180.02562 * 8 7 6 39 39 H 1.07996 * 120.15986 * 359.95792 * 12 11 10 40 40 H 1.08003 * 119.53058 * 180.02562 * 13 12 11 41 41 H 1.08007 * 119.51358 * 180.02562 * 14 13 12 42 42 H 1.07993 * 120.17513 * 179.97438 * 15 14 13 43 43 H 1.07990 * 119.97115 * 0.02562 * 17 16 15 44 44 H 1.08998 * 109.47012 * 239.99635 * 19 18 17 45 45 H 0.96696 * 113.99586 * 299.99246 * 20 19 18 46 46 H 1.07996 * 119.65864 * 0.03154 * 25 10 9 47 47 H 1.07997 * 120.07080 * 0.02562 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5252 6 6 2.7157 -2.2441 1.4894 7 6 3.1764 -2.9035 2.6153 8 6 3.4100 -2.2034 3.7809 9 6 3.1802 -0.8283 3.8231 10 6 3.4296 -0.0706 5.0714 11 6 2.8941 -0.5223 6.3010 12 6 2.1198 -1.6894 6.3725 13 6 1.6206 -2.0951 7.5730 14 6 1.8682 -1.3669 8.7348 15 6 2.6146 -0.2292 8.7025 16 6 3.1466 0.2194 7.4810 17 6 3.9231 1.3886 7.4109 18 6 4.4277 1.8019 6.2150 19 6 5.2581 3.0582 6.1563 20 8 6.5621 2.7445 5.6631 21 14 5.3998 3.7893 7.8640 22 1 6.0494 2.8084 8.7701 23 1 6.2175 5.0275 7.8059 24 1 4.0447 4.1152 8.3769 25 6 4.1847 1.0885 5.0468 26 6 2.7101 -0.1704 2.6870 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.5741 1.7564 0.0005 31 1 2.1207 2.2703 -0.8900 32 1 2.1207 2.2703 0.8900 33 1 2.1206 -1.9059 -1.5211 34 1 2.1208 -0.3644 -2.4111 35 1 3.5740 -0.8786 -1.5209 36 1 2.5342 -2.7965 0.5792 37 1 3.3538 -3.9683 2.5813 38 1 3.7699 -2.7191 4.6589 39 1 1.9201 -2.2636 5.4799 40 1 1.0249 -2.9945 7.6253 41 1 1.4613 -1.7099 9.6747 42 1 2.7983 0.3255 9.6107 43 1 4.1206 1.9594 8.3061 44 1 4.7815 3.7780 5.4909 45 1 7.0457 2.1081 6.2072 46 1 4.5928 1.4407 4.1109 47 1 2.5259 0.8934 2.7152 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17541466_15738306.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:03:16 Heat of formation + Delta-G solvation = -2.553389 kcal Electronic energy + Delta-G solvation = -25999.443081 eV Core-core repulsion = 22620.985843 eV Total energy + Delta-G solvation = -3378.457237 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 336.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.74993 -39.71645 -38.69890 -36.73604 -34.65477 -32.00169 -31.83820 -31.21363 -29.87471 -29.36920 -28.28583 -28.26588 -26.82701 -24.83796 -23.74000 -23.44821 -22.68874 -21.47066 -18.80640 -18.40236 -17.86304 -17.40418 -17.01194 -16.25251 -16.12060 -15.87035 -15.51354 -15.34183 -14.89058 -14.79274 -14.57128 -14.38497 -14.27131 -14.07112 -14.02632 -13.88911 -13.75709 -13.44190 -13.21139 -13.13324 -13.09495 -12.97759 -12.81655 -12.64012 -12.33477 -12.23078 -12.19689 -12.01441 -11.75419 -11.62747 -11.12709 -10.90311 -10.76634 -10.72975 -10.45513 -9.77470 -9.70381 -9.60853 -8.71748 -0.68007 -0.06238 0.30205 0.44678 1.03170 1.13021 1.42454 1.48378 1.82211 1.87086 1.91110 2.01833 2.10563 2.65993 2.87662 3.06112 3.40428 3.44945 3.61458 3.78262 3.89774 4.00772 4.08297 4.09170 4.19758 4.30598 4.33540 4.39068 4.48238 4.56437 4.63201 4.69942 4.82960 4.83721 4.85239 4.87373 4.88002 4.89892 4.90688 4.90938 5.04117 5.12080 5.13643 5.23404 5.34532 5.47833 5.49883 5.52215 5.56514 5.59343 5.65110 5.66492 5.69839 5.77657 5.97496 6.11491 6.64800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.122 2.878 3 C -0.464 4.464 4 C -0.458 4.458 5 C -0.379 4.379 6 C -0.093 4.093 7 C -0.138 4.138 8 C -0.108 4.108 9 C -0.073 4.073 10 C -0.041 4.041 11 C -0.054 4.054 12 C -0.122 4.122 13 C -0.118 4.118 14 C -0.117 4.117 15 C -0.117 4.117 16 C -0.062 4.062 17 C -0.119 4.119 18 C -0.109 4.109 19 C -0.081 4.081 20 O -0.551 6.551 21 Si 0.979 3.021 22 H -0.250 1.250 23 H -0.271 1.271 24 H -0.254 1.254 25 C -0.089 4.089 26 C -0.085 4.085 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.141 0.859 37 H 0.136 0.864 38 H 0.121 0.879 39 H 0.133 0.867 40 H 0.142 0.858 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.137 0.863 44 H 0.127 0.873 45 H 0.388 0.612 46 H 0.133 0.867 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.296 -1.088 -0.126 1.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.309 2.691 3 C -0.571 4.571 4 C -0.566 4.566 5 C -0.418 4.418 6 C -0.111 4.111 7 C -0.156 4.156 8 C -0.126 4.126 9 C -0.073 4.073 10 C -0.041 4.041 11 C -0.054 4.054 12 C -0.140 4.140 13 C -0.135 4.135 14 C -0.135 4.135 15 C -0.135 4.135 16 C -0.062 4.062 17 C -0.136 4.136 18 C -0.110 4.110 19 C -0.191 4.191 20 O -0.357 6.357 21 Si 0.803 3.197 22 H -0.174 1.174 23 H -0.196 1.196 24 H -0.179 1.179 25 C -0.107 4.107 26 C -0.103 4.103 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.159 0.841 37 H 0.154 0.846 38 H 0.139 0.861 39 H 0.151 0.849 40 H 0.160 0.840 41 H 0.165 0.835 42 H 0.164 0.836 43 H 0.155 0.845 44 H 0.145 0.855 45 H 0.237 0.763 46 H 0.151 0.849 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.378 -0.354 0.315 1.458 hybrid contribution 0.190 -0.720 0.292 0.800 sum -1.189 -1.074 0.607 1.713 Atomic orbital electron populations 1.26280 1.21591 1.04536 1.04452 0.77249 0.65273 0.64645 0.61934 1.26299 1.06441 1.19601 1.04722 1.26225 1.06444 1.08512 1.15406 1.27891 1.03621 0.99841 1.10496 1.21497 0.96272 0.94849 0.98476 1.21449 1.00172 1.00799 0.93200 1.21373 0.99508 0.93130 0.98610 1.18899 1.01936 0.93678 0.92772 1.19015 0.98035 0.95267 0.91790 1.18195 0.98694 0.96098 0.92398 1.21319 0.97626 0.95813 0.99226 1.21242 0.99334 1.00615 0.92358 1.21220 0.97925 0.94899 0.99428 1.21355 0.97783 0.97467 0.96903 1.18163 0.98880 0.95522 0.93675 1.21095 0.98395 0.96248 0.97869 1.20042 0.99611 0.98157 0.93157 1.25130 0.84283 0.96948 1.12763 1.86484 1.26659 1.66954 1.55640 0.85260 0.80688 0.79372 0.74403 1.17416 1.19645 1.17853 1.21082 0.97279 0.93766 0.98592 1.21364 0.96951 1.00039 0.91925 0.91713 0.90593 0.91211 0.91290 0.90544 0.91306 0.90685 0.90592 0.91212 0.84102 0.84592 0.86085 0.84943 0.83984 0.83520 0.83555 0.84519 0.85539 0.76285 0.84929 0.85409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.17 8.65 113.37 0.98 2.15 16 2 Si 1.12 -5.14 12.31 68.60 0.84 -4.29 16 3 C -0.46 1.24 8.53 113.37 0.97 2.21 16 4 C -0.46 1.85 8.53 113.37 0.97 2.81 16 5 C -0.38 -0.21 4.59 22.24 0.10 -0.11 16 6 C -0.09 -0.06 9.29 22.32 0.21 0.15 16 7 C -0.14 -0.28 10.03 22.23 0.22 -0.06 16 8 C -0.11 -0.47 7.61 22.50 0.17 -0.30 16 9 C -0.07 -0.41 5.04 -20.06 -0.10 -0.51 16 10 C -0.04 -0.27 5.50 -19.81 -0.11 -0.38 16 11 C -0.05 -0.37 5.74 -21.15 -0.12 -0.49 16 12 C -0.12 -0.60 8.59 22.28 0.19 -0.41 16 13 C -0.12 -0.24 9.95 22.06 0.22 -0.02 16 14 C -0.12 -0.11 9.95 22.04 0.22 0.11 16 15 C -0.12 -0.27 9.77 22.35 0.22 -0.06 16 16 C -0.06 -0.35 5.74 -21.31 -0.12 -0.47 16 17 C -0.12 -0.41 8.37 22.36 0.19 -0.22 16 18 C -0.11 -0.34 5.36 -20.14 -0.11 -0.45 16 19 C -0.08 -0.01 2.80 71.24 0.20 0.19 16 20 O -0.55 -0.83 12.76 -148.98 -1.90 -2.73 16 21 Si 0.98 -0.70 25.02 68.60 1.72 1.01 16 22 H -0.25 0.20 7.11 99.48 0.71 0.90 16 23 H -0.27 -0.65 7.11 99.48 0.71 0.06 16 24 H -0.25 -0.01 7.11 99.48 0.71 0.70 16 25 C -0.09 -0.45 9.02 22.49 0.20 -0.25 16 26 C -0.08 -0.29 8.75 22.51 0.20 -0.09 16 27 H 0.06 -0.08 7.96 -2.39 -0.02 -0.10 16 28 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 29 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 30 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 31 H 0.08 -0.26 7.96 -2.39 -0.02 -0.28 16 32 H 0.07 -0.16 7.68 -2.39 -0.02 -0.18 16 33 H 0.07 -0.36 7.67 -2.38 -0.02 -0.38 16 34 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 35 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 36 H 0.14 -0.57 7.40 -2.91 -0.02 -0.59 16 37 H 0.14 -0.24 8.06 -2.91 -0.02 -0.26 16 38 H 0.12 0.43 7.26 -2.91 -0.02 0.41 16 39 H 0.13 0.51 5.59 -2.91 -0.02 0.50 16 40 H 0.14 -0.34 8.06 -2.91 -0.02 -0.36 16 41 H 0.15 -0.59 8.06 -2.91 -0.02 -0.61 16 42 H 0.15 -0.34 8.06 -2.91 -0.02 -0.37 16 43 H 0.14 -0.03 4.74 -2.92 -0.01 -0.04 16 44 H 0.13 -0.22 7.96 -2.39 -0.02 -0.24 16 45 H 0.39 -1.73 8.70 -74.06 -0.64 -2.37 16 46 H 0.13 0.52 8.03 -2.91 -0.02 0.50 16 47 H 0.13 0.14 7.41 -2.91 -0.02 0.12 16 Total: 0.00 -12.43 383.63 6.43 -6.00 By element: Atomic # 1 Polarization: -4.87 SS G_CDS: 1.08 Total: -3.79 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 4.69 Total: 3.80 kcal Atomic # 8 Polarization: -0.83 SS G_CDS: -1.90 Total: -2.73 kcal Atomic # 14 Polarization: -5.84 SS G_CDS: 2.56 Total: -3.28 kcal Total: -12.43 6.43 -6.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17541466_15738306.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.445 kcal (2) G-P(sol) polarization free energy of solvation -12.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds