Wall clock time and date at job start Mon Mar 8 2021 06:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47254 * 2 1 4 4 C 1.52998 * 109.47494 * 239.99272 * 2 1 3 5 5 Si 1.86307 * 109.47101 * 119.99430 * 2 1 3 6 6 C 1.86302 * 109.47164 * 300.00494 * 5 2 1 7 7 C 1.86292 * 109.47209 * 179.97438 * 5 2 1 8 8 O 1.63100 * 109.46833 * 60.00115 * 5 2 1 9 9 C 1.42908 * 113.99843 * 180.02562 * 8 5 2 10 10 C 1.50702 * 109.46956 * 180.02562 * 9 8 5 11 11 C 1.33525 * 122.06816 * 359.97438 * 10 9 8 12 12 S 1.76241 * 108.26429 * 180.02562 * 11 10 9 13 13 C 1.76179 * 89.85759 * 0.02562 * 12 11 10 14 14 C 1.47782 * 125.47965 * 179.97438 * 13 12 11 15 15 C 1.34837 * 122.82259 * 6.13957 * 14 13 12 16 16 C 1.50704 * 125.23694 * 359.97438 * 15 14 13 17 17 O 1.42903 * 109.47119 * 157.56210 * 16 15 14 18 18 Si 1.86302 * 109.47415 * 277.56416 * 16 15 14 19 19 H 1.48500 * 109.46874 * 180.02562 * 18 16 15 20 20 H 1.48500 * 109.47016 * 300.00283 * 18 16 15 21 21 H 1.48496 * 109.47138 * 59.99817 * 18 16 15 22 22 S 1.75841 * 109.52506 * 180.02562 * 15 14 13 23 23 C 1.75797 * 91.18617 * 359.97438 * 22 15 14 24 24 C 1.32956 * 110.00783 * 0.02562 * 23 22 15 25 25 N 1.30275 * 109.03707 * 0.24039 * 13 12 11 26 26 H 1.09003 * 109.47491 * 300.00568 * 1 2 3 27 27 H 1.08999 * 109.47279 * 60.00604 * 1 2 3 28 28 H 1.09003 * 109.47191 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47440 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.46803 * 299.99847 * 3 2 1 31 31 H 1.09003 * 109.47335 * 59.99336 * 3 2 1 32 32 H 1.09003 * 109.47148 * 300.00329 * 4 2 1 33 33 H 1.09007 * 109.46626 * 60.00114 * 4 2 1 34 34 H 1.08998 * 109.47429 * 179.97438 * 4 2 1 35 35 H 1.08999 * 109.47103 * 180.02562 * 6 5 2 36 36 H 1.09003 * 109.46780 * 299.99643 * 6 5 2 37 37 H 1.08998 * 109.47446 * 59.99391 * 6 5 2 38 38 H 1.08995 * 109.47222 * 300.00094 * 7 5 2 39 39 H 1.09003 * 109.47094 * 60.00137 * 7 5 2 40 40 H 1.08999 * 109.47386 * 179.97438 * 7 5 2 41 41 H 1.08995 * 109.46987 * 59.99923 * 9 8 5 42 42 H 1.08995 * 109.46584 * 299.99997 * 9 8 5 43 43 H 1.08001 * 125.86551 * 0.06376 * 11 10 9 44 44 H 1.08998 * 109.46849 * 37.56854 * 16 15 14 45 45 H 0.96696 * 114.00271 * 180.02562 * 17 16 15 46 46 H 1.08009 * 124.99479 * 180.26468 * 23 22 15 47 47 H 1.08002 * 122.53731 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 14 2.1510 -0.8781 1.5213 6 6 1.5299 0.0002 3.0424 7 6 4.0139 -0.8788 1.5209 8 8 1.6073 -2.4158 1.5213 9 6 2.0285 -3.1812 2.6523 10 6 1.4722 -4.5779 2.5490 11 6 0.7087 -4.9629 1.5234 12 16 0.2627 -6.6501 1.7695 13 6 1.1769 -6.6675 3.2754 14 6 1.3186 -7.8279 4.1795 15 6 0.8468 -9.0537 3.8747 16 6 0.1238 -9.4157 2.6030 17 8 0.2326 -10.8225 2.3771 18 14 -1.6732 -8.9484 2.7555 19 1 -2.3856 -9.3057 1.5025 20 1 -2.2801 -9.6811 3.8957 21 1 -1.7863 -7.4864 2.9903 22 16 1.2036 -10.1645 5.1903 23 6 1.9907 -8.8861 6.1049 24 6 1.9519 -7.7470 5.4205 25 7 1.7032 -5.4912 3.4667 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6767 -1.7491 -1.2490 33 1 1.6767 -0.2076 -2.1392 34 1 3.1300 -0.7210 -1.2493 35 1 1.8936 -0.5133 3.9324 36 1 1.8932 1.0279 3.0423 37 1 0.4399 0.0002 3.0423 38 1 4.3769 -1.3930 0.6310 39 1 4.3776 0.1487 1.5206 40 1 4.3773 -1.3921 2.4112 41 1 1.6636 -2.7110 3.5654 42 1 3.1173 -3.2249 2.6762 43 1 0.4154 -4.3464 0.6865 44 1 0.5693 -8.8778 1.7661 45 1 -0.2104 -11.1273 1.5734 46 1 2.4430 -9.0090 7.0780 47 1 2.3781 -6.8286 5.7964 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_18051846_12621894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:49:07 Heat of formation + Delta-G solvation = -51.484068 kcal Electronic energy + Delta-G solvation = -26818.875301 eV Core-core repulsion = 23150.558225 eV Total energy + Delta-G solvation = -3668.317076 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 371.096 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.90030 -39.36294 -37.90571 -37.52184 -36.89062 -32.52464 -31.27318 -29.52676 -29.13157 -28.02728 -27.90820 -27.42754 -27.41944 -24.99121 -23.38885 -21.32521 -20.44312 -19.68375 -18.95510 -18.42847 -18.20746 -17.29917 -16.85867 -16.64845 -16.51274 -16.12241 -15.72523 -15.25993 -15.06715 -14.91111 -14.82561 -14.78480 -14.66867 -14.07254 -13.93403 -13.82889 -13.68877 -13.55152 -13.44081 -13.27540 -13.26464 -13.02023 -12.98042 -12.96205 -12.57536 -12.45943 -12.22163 -12.11207 -12.01017 -11.76005 -11.69936 -11.66284 -11.46584 -10.98167 -10.71324 -10.60674 -10.43909 -10.13015 -9.83459 -9.43584 -8.94306 -0.72108 0.09108 0.20801 0.52323 0.64669 0.98279 1.05288 1.29352 1.30334 1.40032 1.48296 1.68227 1.84353 1.99973 2.18580 2.33336 2.92446 3.10793 3.68583 3.86007 4.06529 4.06902 4.12190 4.17439 4.26859 4.36637 4.36864 4.41565 4.47949 4.56182 4.64931 4.70019 4.70307 4.71222 4.77029 4.80628 4.89549 4.95051 5.05305 5.05882 5.09283 5.18496 5.19061 5.29725 5.31660 5.37062 5.37411 5.43868 5.51403 5.56786 6.32980 6.72818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.374 4.374 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.293 2.707 6 C -0.512 4.512 7 C -0.512 4.512 8 O -0.627 6.627 9 C 0.163 3.837 10 C 0.056 3.944 11 C -0.216 4.216 12 S 0.070 5.930 13 C 0.139 3.861 14 C -0.039 4.039 15 C -0.162 4.162 16 C -0.051 4.051 17 O -0.538 6.538 18 Si 0.890 3.110 19 H -0.232 1.232 20 H -0.228 1.228 21 H -0.213 1.213 22 S 0.191 5.809 23 C -0.224 4.224 24 C -0.097 4.097 25 N -0.454 5.454 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.189 0.811 44 H 0.089 0.911 45 H 0.389 0.611 46 H 0.174 0.826 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.807 -0.078 -0.694 1.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.417 4.417 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.425 2.575 6 C -0.614 4.614 7 C -0.614 4.614 8 O -0.585 6.585 9 C 0.085 3.915 10 C -0.075 4.075 11 C -0.355 4.355 12 S 0.326 5.674 13 C -0.138 4.138 14 C -0.056 4.056 15 C -0.284 4.284 16 C -0.162 4.162 17 O -0.345 6.345 18 Si 0.707 3.293 19 H -0.154 1.154 20 H -0.151 1.151 21 H -0.136 1.136 22 S 0.457 5.543 23 C -0.360 4.360 24 C -0.128 4.128 25 N -0.170 5.170 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.206 0.794 44 H 0.106 0.894 45 H 0.238 0.762 46 H 0.191 0.809 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.066 -2.145 -0.068 2.979 hybrid contribution 1.099 2.695 -0.759 3.007 sum -0.967 0.550 -0.827 1.387 Atomic orbital electron populations 1.21514 0.93796 1.01955 1.01858 1.25773 1.00673 1.02674 1.12615 1.21555 1.00823 0.94833 1.02196 1.21515 1.00679 1.00157 0.96771 0.76617 0.63032 0.52794 0.65050 1.27037 1.07062 1.09557 1.17763 1.27036 1.24917 1.04841 1.04626 1.85232 1.79617 1.46213 1.47440 1.20158 0.97978 0.86089 0.87257 1.19837 1.00110 0.96348 0.91195 1.26898 1.05399 0.97658 1.05548 1.84999 1.50048 1.10384 1.21975 1.25065 0.98994 0.93992 0.95760 1.16508 1.04645 0.89122 0.95362 1.24153 1.06403 0.97059 1.00807 1.24277 1.10098 0.86823 0.94974 1.86452 1.79780 1.19324 1.48958 0.86361 0.74632 0.84195 0.84079 1.15386 1.15054 1.13643 1.84506 1.52747 1.10503 1.06582 1.25693 1.08394 0.96521 1.05369 1.19941 1.00391 0.99820 0.92616 1.66203 1.22515 0.99601 1.28642 0.92650 0.92773 0.92234 0.92465 0.92472 0.92467 0.92227 0.92779 0.92641 0.91317 0.90614 0.90818 0.90810 0.90617 0.91317 0.90459 0.90451 0.79369 0.89436 0.76222 0.80905 0.82906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.06 7.85 37.16 0.29 0.35 16 2 C -0.37 0.29 0.53 -90.62 -0.05 0.25 16 3 C -0.14 0.13 7.85 37.16 0.29 0.42 16 4 C -0.13 0.06 7.85 37.16 0.29 0.35 16 5 Si 1.29 -1.81 8.45 -169.99 -1.44 -3.25 16 6 C -0.51 0.45 8.50 101.05 0.86 1.31 16 7 C -0.51 0.44 8.50 101.05 0.86 1.30 16 8 O -0.63 0.00 7.41 -35.23 -0.26 -0.26 16 9 C 0.16 0.08 5.72 36.01 0.21 0.29 16 10 C 0.06 0.15 6.69 -84.38 -0.56 -0.42 16 11 C -0.22 -0.39 10.51 29.08 0.31 -0.08 16 12 S 0.07 0.10 16.01 -107.50 -1.72 -1.62 16 13 C 0.14 0.44 7.29 -14.31 -0.10 0.33 16 14 C -0.04 -0.10 5.70 -106.71 -0.61 -0.71 16 15 C -0.16 -0.32 4.85 -35.51 -0.17 -0.49 16 16 C -0.05 -0.01 2.45 36.01 0.09 0.07 16 17 O -0.54 0.24 12.41 -35.23 -0.44 -0.20 16 18 Si 0.89 0.10 25.53 -169.99 -4.34 -4.24 16 19 H -0.23 0.19 7.11 56.52 0.40 0.59 16 20 H -0.23 -0.27 7.11 56.52 0.40 0.13 16 21 H -0.21 -0.16 6.09 56.52 0.34 0.18 16 22 S 0.19 0.23 22.80 -107.50 -2.45 -2.22 16 23 C -0.22 -0.08 11.18 28.90 0.32 0.24 16 24 C -0.10 -0.16 9.90 -40.92 -0.41 -0.56 16 25 N -0.45 -1.68 10.41 -7.57 -0.08 -1.76 16 26 H 0.05 -0.05 7.79 -51.93 -0.40 -0.45 16 27 H 0.05 -0.01 8.14 -51.93 -0.42 -0.43 16 28 H 0.06 -0.02 7.96 -51.93 -0.41 -0.44 16 29 H 0.06 -0.09 7.79 -51.93 -0.40 -0.49 16 30 H 0.06 -0.03 8.14 -51.92 -0.42 -0.45 16 31 H 0.06 -0.09 7.79 -51.93 -0.40 -0.49 16 32 H 0.06 -0.02 7.97 -51.93 -0.41 -0.44 16 33 H 0.05 -0.01 8.14 -51.92 -0.42 -0.43 16 34 H 0.05 -0.05 7.79 -51.93 -0.40 -0.45 16 35 H 0.07 -0.07 7.48 -51.93 -0.39 -0.46 16 36 H 0.07 -0.09 7.79 -51.93 -0.40 -0.49 16 37 H 0.07 -0.04 7.79 -51.93 -0.40 -0.45 16 38 H 0.07 -0.04 7.79 -51.93 -0.40 -0.45 16 39 H 0.07 -0.09 7.79 -51.93 -0.40 -0.49 16 40 H 0.07 -0.07 7.48 -51.93 -0.39 -0.46 16 41 H 0.08 -0.05 7.21 -51.93 -0.37 -0.42 16 42 H 0.08 -0.05 7.21 -51.93 -0.37 -0.42 16 43 H 0.19 0.05 7.50 -52.49 -0.39 -0.34 16 44 H 0.09 -0.04 5.50 -40.68 -0.22 -0.27 16 45 H 0.39 -1.95 8.74 45.56 0.40 -1.55 16 46 H 0.17 -0.36 8.06 -52.48 -0.42 -0.78 16 47 H 0.15 0.14 8.06 -52.49 -0.42 -0.28 16 LS Contribution 398.62 15.07 6.01 6.01 Total: 0.00 -5.03 398.62 -9.88 -14.92 By element: Atomic # 1 Polarization: -3.26 SS G_CDS: -6.78 Total: -10.03 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 1.61 Total: 2.66 kcal Atomic # 7 Polarization: -1.68 SS G_CDS: -0.08 Total: -1.76 kcal Atomic # 8 Polarization: 0.24 SS G_CDS: -0.70 Total: -0.45 kcal Atomic # 14 Polarization: -1.71 SS G_CDS: -5.78 Total: -7.49 kcal Atomic # 16 Polarization: 0.33 SS G_CDS: -4.17 Total: -3.84 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -5.03 -9.88 -14.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_18051846_12621894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.569 kcal (2) G-P(sol) polarization free energy of solvation -5.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds