Wall clock time and date at job start Mon Mar 8 2021 06:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40076 * 126.12800 * 2 1 4 4 C 1.30879 * 108.51234 * 179.73891 * 3 2 1 5 5 C 1.50701 * 125.70534 * 180.22314 * 4 3 2 6 6 O 1.42901 * 109.46993 * 180.18023 * 5 4 3 7 7 Si 1.63100 * 114.00075 * 179.97438 * 6 5 4 8 8 C 1.86303 * 109.47080 * 300.00256 * 7 6 5 9 9 C 1.86308 * 109.47015 * 60.00175 * 7 6 5 10 10 C 1.86297 * 109.47114 * 179.97438 * 7 6 5 11 11 C 1.52998 * 109.46962 * 60.00508 * 10 7 6 12 12 C 1.53000 * 109.47019 * 179.97438 * 10 7 6 13 13 C 1.52997 * 109.47551 * 300.00206 * 10 7 6 14 14 C 1.39541 * 108.58763 * 0.37502 * 4 3 2 15 15 C 1.36254 * 126.13193 * 179.97438 * 2 1 3 16 16 C 1.47980 * 126.34072 * 0.04196 * 15 2 1 17 17 C 1.34735 * 122.79692 * 229.64045 * 16 15 2 18 18 C 1.50705 * 125.23728 * 359.95102 * 17 16 15 19 19 O 1.42899 * 109.46659 * 38.49039 * 18 17 16 20 20 Si 1.86298 * 109.47016 * 158.49055 * 18 17 16 21 21 H 1.48505 * 109.47219 * 60.00270 * 20 18 17 22 22 H 1.48500 * 109.46730 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46917 * 300.00078 * 20 18 17 24 24 S 1.75851 * 109.53182 * 179.97438 * 17 16 15 25 25 C 1.75805 * 91.17281 * 359.97438 * 24 17 16 26 26 C 1.33008 * 109.97703 * 359.75026 * 25 24 17 27 27 H 1.09002 * 109.46396 * 274.79484 * 1 2 3 28 28 H 1.09000 * 109.47208 * 34.79293 * 1 2 3 29 29 H 1.08993 * 109.46920 * 154.79663 * 1 2 3 30 30 H 1.09000 * 109.47009 * 300.17752 * 5 4 3 31 31 H 1.09000 * 109.47059 * 60.18300 * 5 4 3 32 32 H 1.08996 * 109.46901 * 60.00014 * 8 7 6 33 33 H 1.08997 * 109.46973 * 179.97438 * 8 7 6 34 34 H 1.08999 * 109.46840 * 299.99745 * 8 7 6 35 35 H 1.09002 * 109.46976 * 59.99993 * 9 7 6 36 36 H 1.08997 * 109.47096 * 179.97438 * 9 7 6 37 37 H 1.09005 * 109.46857 * 299.99907 * 9 7 6 38 38 H 1.08994 * 109.47795 * 59.99918 * 11 10 7 39 39 H 1.09006 * 109.47137 * 180.02562 * 11 10 7 40 40 H 1.09006 * 109.47029 * 299.99591 * 11 10 7 41 41 H 1.08997 * 109.47317 * 60.00465 * 12 10 7 42 42 H 1.09005 * 109.47137 * 179.97438 * 12 10 7 43 43 H 1.09002 * 109.47371 * 300.00415 * 12 10 7 44 44 H 1.08997 * 109.46972 * 59.99807 * 13 10 7 45 45 H 1.08995 * 109.47521 * 180.02562 * 13 10 7 46 46 H 1.09007 * 109.47003 * 300.00210 * 13 10 7 47 47 H 1.07995 * 126.08006 * 179.88229 * 14 4 3 48 48 H 1.08993 * 109.46975 * 278.49075 * 18 17 16 49 49 H 0.96703 * 113.99796 * 174.99999 * 19 18 17 50 50 H 1.08005 * 125.01134 * 179.97438 * 25 24 17 51 51 H 1.07997 * 122.54421 * 180.24339 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2909 1.1314 0.0000 4 6 3.5383 0.7353 0.0057 5 6 4.7469 1.6355 0.0125 6 8 5.9337 0.8395 0.0132 7 14 7.3146 1.7074 0.0197 8 6 7.3772 2.7863 -1.4978 9 6 7.3689 2.7766 1.5445 10 6 8.7750 0.5507 0.0208 11 6 8.7308 -0.3277 -1.2311 12 6 10.0704 1.3649 0.0263 13 6 8.7234 -0.3349 1.2673 14 6 3.5620 -0.6599 0.0008 15 6 2.2685 -1.1005 0.0005 16 6 1.8228 -2.5116 0.0003 17 6 2.3019 -3.4284 0.8636 18 6 3.3349 -3.1636 1.9285 19 8 3.1036 -1.8776 2.5071 20 14 3.2128 -4.4705 3.2506 21 1 3.4531 -5.8069 2.6492 22 1 4.2303 -4.2092 4.3002 23 1 1.8574 -4.4367 3.8563 24 16 1.5369 -4.9816 0.5562 25 6 0.5863 -4.2950 -0.7536 26 6 0.8667 -3.0018 -0.8891 27 1 -0.3632 0.0859 1.0241 28 1 -0.3633 0.8439 -0.5864 29 1 -0.3633 -0.9298 -0.4376 30 1 4.7340 2.2677 -0.8754 31 1 4.7287 2.2614 0.9046 32 1 6.5227 3.4630 -1.4979 33 1 8.2998 3.3666 -1.4932 34 1 7.3454 2.1608 -2.3899 35 1 7.3323 2.1453 2.4323 36 1 8.2920 3.3562 1.5491 37 1 6.5144 3.4533 1.5443 38 1 8.7676 0.3031 -2.1192 39 1 9.5850 -1.0048 -1.2303 40 1 7.8079 -0.9078 -1.2355 41 1 10.1023 1.9910 0.9179 42 1 10.9249 0.6881 0.0274 43 1 10.1070 1.9955 -0.8620 44 1 7.8006 -0.9149 1.2629 45 1 9.5781 -1.0113 1.2682 46 1 8.7549 0.2910 2.1593 47 1 4.4455 -1.2810 0.0018 48 1 4.3297 -3.1884 1.4838 49 1 3.6840 -1.6717 3.2526 50 1 -0.1236 -4.8416 -1.3567 51 1 0.3928 -2.3795 -1.6338 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_18051846_15493832.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:47:33 Heat of formation + Delta-G solvation = -15.468806 kcal Electronic energy + Delta-G solvation = -30143.538333 eV Core-core repulsion = 26294.893360 eV Total energy + Delta-G solvation = -3848.644973 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 368.150 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.95429 -39.20253 -37.89336 -37.36942 -36.81380 -33.99033 -32.24617 -30.51640 -29.48448 -29.05066 -28.79436 -27.83231 -27.34952 -26.95518 -25.71525 -24.01367 -21.89984 -20.92385 -20.34608 -19.53193 -18.66663 -18.05195 -17.50772 -17.20162 -16.50262 -16.37090 -16.02691 -15.88687 -15.61462 -15.37580 -14.90598 -14.84480 -14.79321 -14.70078 -14.56968 -14.05295 -13.95705 -13.72156 -13.62027 -13.57130 -13.35278 -13.26071 -13.16267 -13.06176 -12.92839 -12.90158 -12.83946 -12.61360 -12.42438 -12.38527 -11.99656 -11.93145 -11.75718 -11.69840 -11.57933 -11.44338 -11.26308 -10.66220 -10.37985 -10.04625 -10.01284 -9.59007 -9.38577 -8.90071 -0.21675 0.37276 0.71377 0.98273 1.04903 1.34073 1.37362 1.42486 1.61873 1.77912 1.85455 1.93048 2.09672 2.28474 2.49784 3.32428 3.67043 3.76933 3.77773 4.14088 4.14359 4.15266 4.24362 4.31999 4.36435 4.37976 4.48075 4.49166 4.52987 4.60910 4.68662 4.72649 4.77859 4.78109 4.82579 4.83478 4.85210 4.88034 5.01498 5.02345 5.12561 5.12884 5.21144 5.23238 5.30536 5.36002 5.41799 5.44911 5.50167 5.57562 5.61730 5.64266 5.98332 6.29650 6.58958 7.03144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.365 5.365 3 N -0.290 5.290 4 C 0.066 3.934 5 C 0.173 3.827 6 O -0.619 6.619 7 Si 1.293 2.707 8 C -0.514 4.514 9 C -0.512 4.512 10 C -0.373 4.373 11 C -0.134 4.134 12 C -0.137 4.137 13 C -0.133 4.133 14 C -0.201 4.201 15 C 0.152 3.848 16 C -0.025 4.025 17 C -0.152 4.152 18 C -0.040 4.040 19 O -0.528 6.528 20 Si 0.895 3.105 21 H -0.232 1.232 22 H -0.232 1.232 23 H -0.237 1.237 24 S 0.121 5.879 25 C -0.201 4.201 26 C -0.128 4.128 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.052 0.948 46 H 0.054 0.946 47 H 0.148 0.852 48 H 0.089 0.911 49 H 0.379 0.621 50 H 0.172 0.828 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.083 -1.880 0.378 1.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.148 5.148 3 N -0.115 5.115 4 C -0.098 4.098 5 C 0.095 3.905 6 O -0.578 6.578 7 Si 1.425 2.575 8 C -0.615 4.615 9 C -0.614 4.614 10 C -0.417 4.417 11 C -0.191 4.191 12 C -0.194 4.194 13 C -0.191 4.191 14 C -0.230 4.230 15 C 0.024 3.976 16 C -0.039 4.039 17 C -0.270 4.270 18 C -0.152 4.152 19 O -0.333 6.333 20 Si 0.714 3.286 21 H -0.155 1.155 22 H -0.154 1.154 23 H -0.159 1.159 24 S 0.386 5.614 25 C -0.336 4.336 26 C -0.159 4.159 27 H 0.092 0.908 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.166 0.834 48 H 0.107 0.893 49 H 0.227 0.773 50 H 0.189 0.811 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.384 -3.219 1.183 3.698 hybrid contribution 1.019 1.320 -0.614 1.778 sum -0.364 -1.898 0.569 2.015 Atomic orbital electron populations 1.21881 0.74500 1.04121 1.03578 1.48563 1.06003 1.02649 1.57629 1.77184 1.00810 1.07412 1.26078 1.21803 0.92375 0.94491 1.01133 1.19894 0.80175 0.88880 1.01504 1.85247 1.27471 1.53525 1.91512 0.76622 0.56389 0.59498 0.65039 1.27056 1.04596 1.11491 1.18379 1.27049 1.04580 1.11354 1.18439 1.25766 1.11052 1.06559 0.98316 1.21513 1.02120 0.99356 0.96132 1.21558 0.96642 0.99642 1.01572 1.21507 1.02070 0.99306 0.96176 1.20905 0.95257 0.93623 1.13218 1.18851 0.90595 0.85814 1.02385 1.16817 0.99230 0.91084 0.96803 1.23976 1.04508 0.96727 1.01826 1.23921 0.97548 0.94549 0.99231 1.86606 1.63008 1.32202 1.51533 0.86357 0.83627 0.78568 0.80018 1.15472 1.15435 1.15912 1.84458 1.36056 1.09521 1.31412 1.25514 1.05961 0.98297 1.03820 1.20125 0.99358 0.95352 1.01017 0.90773 0.89452 0.89523 0.90939 0.90824 0.91363 0.90759 0.90818 0.90826 0.90772 0.91360 0.92716 0.92893 0.92047 0.92528 0.92551 0.92517 0.92067 0.92906 0.92723 0.83386 0.89302 0.77319 0.81052 0.83891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.04 11.34 59.85 0.68 0.72 16 2 N -0.37 -1.38 4.05 -64.16 -0.26 -1.64 16 3 N -0.29 -1.48 12.56 33.61 0.42 -1.06 16 4 C 0.07 0.26 7.16 -82.51 -0.59 -0.33 16 5 C 0.17 0.22 5.75 36.01 0.21 0.42 16 6 O -0.62 -0.38 7.88 -35.23 -0.28 -0.66 16 7 Si 1.29 -1.38 8.45 -169.99 -1.44 -2.81 16 8 C -0.51 0.23 8.50 101.05 0.86 1.09 16 9 C -0.51 0.36 8.50 101.05 0.86 1.22 16 10 C -0.37 0.22 0.53 -90.62 -0.05 0.18 16 11 C -0.13 0.02 7.84 37.16 0.29 0.31 16 12 C -0.14 0.11 7.85 37.16 0.29 0.40 16 13 C -0.13 0.07 7.85 37.16 0.29 0.36 16 14 C -0.20 -0.74 8.30 -39.67 -0.33 -1.07 16 15 C 0.15 0.54 5.30 -82.48 -0.44 0.10 16 16 C -0.03 -0.06 5.40 -106.68 -0.58 -0.63 16 17 C -0.15 -0.22 5.80 -35.55 -0.21 -0.43 16 18 C -0.04 0.00 2.42 36.01 0.09 0.09 16 19 O -0.53 -0.37 10.31 -35.23 -0.36 -0.73 16 20 Si 0.89 -0.43 26.41 -169.99 -4.49 -4.91 16 21 H -0.23 0.06 7.11 56.52 0.40 0.46 16 22 H -0.23 0.19 7.11 56.52 0.40 0.59 16 23 H -0.24 -0.28 7.11 56.52 0.40 0.12 16 24 S 0.12 0.04 20.87 -107.50 -2.24 -2.20 16 25 C -0.20 0.09 11.18 28.92 0.32 0.42 16 26 C -0.13 -0.07 8.68 -40.93 -0.36 -0.42 16 27 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 28 H 0.09 -0.05 8.14 -51.93 -0.42 -0.47 16 29 H 0.09 -0.11 5.72 -51.93 -0.30 -0.40 16 30 H 0.07 0.00 7.21 -51.93 -0.37 -0.37 16 31 H 0.07 -0.01 7.21 -51.93 -0.37 -0.38 16 32 H 0.07 -0.04 7.48 -51.93 -0.39 -0.43 16 33 H 0.07 -0.06 7.79 -51.93 -0.40 -0.46 16 34 H 0.07 -0.01 7.79 -51.93 -0.40 -0.41 16 35 H 0.07 -0.04 7.79 -51.93 -0.40 -0.45 16 36 H 0.07 -0.07 7.79 -51.93 -0.40 -0.48 16 37 H 0.07 -0.05 7.48 -51.93 -0.39 -0.44 16 38 H 0.05 -0.03 7.80 -51.93 -0.40 -0.43 16 39 H 0.05 0.00 8.14 -51.93 -0.42 -0.42 16 40 H 0.06 0.00 7.97 -51.93 -0.41 -0.41 16 41 H 0.06 -0.08 7.79 -51.93 -0.40 -0.48 16 42 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 43 H 0.06 -0.07 7.79 -51.93 -0.40 -0.48 16 44 H 0.06 -0.04 7.96 -51.93 -0.41 -0.45 16 45 H 0.05 -0.01 8.14 -51.93 -0.42 -0.43 16 46 H 0.05 -0.06 7.79 -51.92 -0.40 -0.46 16 47 H 0.15 0.43 7.89 -52.49 -0.41 0.02 16 48 H 0.09 -0.14 7.96 -51.93 -0.41 -0.55 16 49 H 0.38 -1.20 8.62 45.56 0.39 -0.81 16 50 H 0.17 -0.48 8.06 -52.48 -0.42 -0.91 16 51 H 0.14 -0.12 7.27 -52.49 -0.38 -0.50 16 LS Contribution 418.12 15.07 6.30 6.30 Total: 0.00 -6.58 418.12 -9.04 -15.61 By element: Atomic # 1 Polarization: -2.28 SS G_CDS: -8.04 Total: -10.31 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 1.35 Total: 2.42 kcal Atomic # 7 Polarization: -2.86 SS G_CDS: 0.16 Total: -2.70 kcal Atomic # 8 Polarization: -0.75 SS G_CDS: -0.64 Total: -1.40 kcal Atomic # 14 Polarization: -1.80 SS G_CDS: -5.93 Total: -7.73 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -2.24 Total: -2.20 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -6.58 -9.04 -15.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_18051846_15493832.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.146 kcal (2) G-P(sol) polarization free energy of solvation -6.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds