Wall clock time and date at job start Mon Mar 8 2021 06:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40076 * 126.12800 * 2 1 4 4 C 1.30879 * 108.51234 * 179.73891 * 3 2 1 5 5 C 1.50701 * 125.70534 * 180.22314 * 4 3 2 6 6 O 1.42901 * 109.46993 * 180.18023 * 5 4 3 7 7 Si 1.63100 * 114.00075 * 179.97438 * 6 5 4 8 8 C 1.86303 * 109.47080 * 300.00256 * 7 6 5 9 9 C 1.86308 * 109.47015 * 60.00175 * 7 6 5 10 10 C 1.86297 * 109.47114 * 179.97438 * 7 6 5 11 11 C 1.52998 * 109.46962 * 60.00508 * 10 7 6 12 12 C 1.53000 * 109.47019 * 179.97438 * 10 7 6 13 13 C 1.52997 * 109.47551 * 300.00206 * 10 7 6 14 14 C 1.39541 * 108.58763 * 0.37502 * 4 3 2 15 15 C 1.36254 * 126.13193 * 179.97438 * 2 1 3 16 16 C 1.47980 * 126.34072 * 0.04196 * 15 2 1 17 17 C 1.34735 * 122.79692 * 229.64045 * 16 15 2 18 18 C 1.50705 * 125.23728 * 359.95102 * 17 16 15 19 19 O 1.42899 * 109.46659 * 38.49039 * 18 17 16 20 20 Si 1.86298 * 109.47016 * 158.49055 * 18 17 16 21 21 H 1.48505 * 109.47219 * 60.00270 * 20 18 17 22 22 H 1.48500 * 109.46730 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46917 * 300.00078 * 20 18 17 24 24 S 1.75851 * 109.53182 * 179.97438 * 17 16 15 25 25 C 1.75805 * 91.17281 * 359.97438 * 24 17 16 26 26 C 1.33008 * 109.97703 * 359.75026 * 25 24 17 27 27 H 1.09002 * 109.46396 * 274.79484 * 1 2 3 28 28 H 1.09000 * 109.47208 * 34.79293 * 1 2 3 29 29 H 1.08993 * 109.46920 * 154.79663 * 1 2 3 30 30 H 1.09000 * 109.47009 * 300.17752 * 5 4 3 31 31 H 1.09000 * 109.47059 * 60.18300 * 5 4 3 32 32 H 1.08996 * 109.46901 * 60.00014 * 8 7 6 33 33 H 1.08997 * 109.46973 * 179.97438 * 8 7 6 34 34 H 1.08999 * 109.46840 * 299.99745 * 8 7 6 35 35 H 1.09002 * 109.46976 * 59.99993 * 9 7 6 36 36 H 1.08997 * 109.47096 * 179.97438 * 9 7 6 37 37 H 1.09005 * 109.46857 * 299.99907 * 9 7 6 38 38 H 1.08994 * 109.47795 * 59.99918 * 11 10 7 39 39 H 1.09006 * 109.47137 * 180.02562 * 11 10 7 40 40 H 1.09006 * 109.47029 * 299.99591 * 11 10 7 41 41 H 1.08997 * 109.47317 * 60.00465 * 12 10 7 42 42 H 1.09005 * 109.47137 * 179.97438 * 12 10 7 43 43 H 1.09002 * 109.47371 * 300.00415 * 12 10 7 44 44 H 1.08997 * 109.46972 * 59.99807 * 13 10 7 45 45 H 1.08995 * 109.47521 * 180.02562 * 13 10 7 46 46 H 1.09007 * 109.47003 * 300.00210 * 13 10 7 47 47 H 1.07995 * 126.08006 * 179.88229 * 14 4 3 48 48 H 1.08993 * 109.46975 * 278.49075 * 18 17 16 49 49 H 0.96703 * 113.99796 * 174.99999 * 19 18 17 50 50 H 1.08005 * 125.01134 * 179.97438 * 25 24 17 51 51 H 1.07997 * 122.54421 * 180.24339 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2909 1.1314 0.0000 4 6 3.5383 0.7353 0.0057 5 6 4.7469 1.6355 0.0125 6 8 5.9337 0.8395 0.0132 7 14 7.3146 1.7074 0.0197 8 6 7.3772 2.7863 -1.4978 9 6 7.3689 2.7766 1.5445 10 6 8.7750 0.5507 0.0208 11 6 8.7308 -0.3277 -1.2311 12 6 10.0704 1.3649 0.0263 13 6 8.7234 -0.3349 1.2673 14 6 3.5620 -0.6599 0.0008 15 6 2.2685 -1.1005 0.0005 16 6 1.8228 -2.5116 0.0003 17 6 2.3019 -3.4284 0.8636 18 6 3.3349 -3.1636 1.9285 19 8 3.1036 -1.8776 2.5071 20 14 3.2128 -4.4705 3.2506 21 1 3.4531 -5.8069 2.6492 22 1 4.2303 -4.2092 4.3002 23 1 1.8574 -4.4367 3.8563 24 16 1.5369 -4.9816 0.5562 25 6 0.5863 -4.2950 -0.7536 26 6 0.8667 -3.0018 -0.8891 27 1 -0.3632 0.0859 1.0241 28 1 -0.3633 0.8439 -0.5864 29 1 -0.3633 -0.9298 -0.4376 30 1 4.7340 2.2677 -0.8754 31 1 4.7287 2.2614 0.9046 32 1 6.5227 3.4630 -1.4979 33 1 8.2998 3.3666 -1.4932 34 1 7.3454 2.1608 -2.3899 35 1 7.3323 2.1453 2.4323 36 1 8.2920 3.3562 1.5491 37 1 6.5144 3.4533 1.5443 38 1 8.7676 0.3031 -2.1192 39 1 9.5850 -1.0048 -1.2303 40 1 7.8079 -0.9078 -1.2355 41 1 10.1023 1.9910 0.9179 42 1 10.9249 0.6881 0.0274 43 1 10.1070 1.9955 -0.8620 44 1 7.8006 -0.9149 1.2629 45 1 9.5781 -1.0113 1.2682 46 1 8.7549 0.2910 2.1593 47 1 4.4455 -1.2810 0.0018 48 1 4.3297 -3.1884 1.4838 49 1 3.6840 -1.6717 3.2526 50 1 -0.1236 -4.8416 -1.3567 51 1 0.3928 -2.3795 -1.6338 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_18051846_15493832.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:47:31 Heat of formation + Delta-G solvation = -8.246277 kcal Electronic energy + Delta-G solvation = -30143.225141 eV Core-core repulsion = 26294.893360 eV Total energy + Delta-G solvation = -3848.331781 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 368.150 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.12944 -39.23406 -37.92316 -37.36523 -36.76384 -34.11706 -32.30175 -30.62351 -29.45324 -28.99689 -28.85258 -27.77122 -27.30732 -27.00140 -25.80167 -24.03368 -21.98006 -21.07786 -20.32189 -19.61154 -18.66212 -18.07443 -17.52616 -17.26932 -16.60421 -16.36762 -16.04782 -15.89613 -15.68042 -15.41549 -14.91535 -14.78885 -14.77957 -14.69356 -14.61356 -14.06660 -13.91895 -13.74771 -13.59380 -13.57059 -13.31795 -13.27754 -13.12415 -13.09658 -12.92968 -12.87746 -12.83880 -12.63748 -12.41618 -12.33042 -12.00605 -11.92090 -11.74518 -11.68021 -11.55943 -11.53230 -11.32857 -10.67196 -10.37019 -10.11028 -9.99858 -9.58111 -9.51094 -9.06535 -0.24625 0.36193 0.70160 0.86158 1.07043 1.33111 1.40703 1.44417 1.55489 1.80723 1.86048 1.87594 2.12626 2.18417 2.53528 3.36768 3.61254 3.70413 3.80637 4.10311 4.19249 4.19707 4.28654 4.33557 4.35239 4.39056 4.49688 4.52506 4.53477 4.61293 4.63865 4.79428 4.80613 4.82745 4.84472 4.84937 4.88937 4.91247 4.97127 5.07651 5.09915 5.16438 5.17147 5.25431 5.27769 5.33292 5.41147 5.48798 5.49729 5.55771 5.64310 5.70430 5.80336 6.15200 6.78502 6.81898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.373 5.373 3 N -0.321 5.321 4 C 0.059 3.941 5 C 0.169 3.831 6 O -0.628 6.628 7 Si 1.323 2.677 8 C -0.522 4.522 9 C -0.519 4.519 10 C -0.377 4.377 11 C -0.137 4.137 12 C -0.142 4.142 13 C -0.136 4.136 14 C -0.214 4.214 15 C 0.151 3.849 16 C -0.042 4.042 17 C -0.163 4.163 18 C -0.042 4.042 19 O -0.546 6.546 20 Si 0.923 3.077 21 H -0.234 1.234 22 H -0.225 1.225 23 H -0.263 1.263 24 S 0.120 5.880 25 C -0.192 4.192 26 C -0.139 4.139 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.050 0.950 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.047 0.953 46 H 0.060 0.940 47 H 0.150 0.850 48 H 0.103 0.897 49 H 0.393 0.607 50 H 0.197 0.803 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.109 -2.096 0.298 2.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.156 5.156 3 N -0.146 5.146 4 C -0.105 4.105 5 C 0.091 3.909 6 O -0.586 6.586 7 Si 1.453 2.547 8 C -0.624 4.624 9 C -0.620 4.620 10 C -0.420 4.420 11 C -0.194 4.194 12 C -0.199 4.199 13 C -0.193 4.193 14 C -0.243 4.243 15 C 0.023 3.977 16 C -0.057 4.057 17 C -0.282 4.282 18 C -0.155 4.155 19 O -0.354 6.354 20 Si 0.743 3.257 21 H -0.157 1.157 22 H -0.147 1.147 23 H -0.187 1.187 24 S 0.384 5.616 25 C -0.327 4.327 26 C -0.169 4.169 27 H 0.094 0.906 28 H 0.114 0.886 29 H 0.121 0.879 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.079 0.921 47 H 0.168 0.832 48 H 0.120 0.880 49 H 0.243 0.757 50 H 0.214 0.786 51 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.340 -3.428 1.103 3.842 hybrid contribution 0.986 1.348 -0.583 1.769 sum -0.354 -2.080 0.521 2.173 Atomic orbital electron populations 1.22096 0.73144 1.05370 1.04036 1.48820 1.06929 1.02430 1.57459 1.77111 1.01494 1.08509 1.27527 1.22223 0.92807 0.95051 1.00440 1.20034 0.79603 0.88664 1.02570 1.85232 1.27653 1.54065 1.91657 0.76108 0.55373 0.58742 0.64447 1.27154 1.04942 1.11740 1.18524 1.27107 1.04917 1.11534 1.18482 1.25839 1.11551 1.06644 0.97968 1.21543 1.01762 0.99466 0.96645 1.21611 0.96275 0.99735 1.02251 1.21539 1.01860 0.99411 0.96540 1.21002 0.95553 0.93720 1.14070 1.19097 0.90711 0.86428 1.01494 1.16971 1.00275 0.90606 0.97817 1.24253 1.04757 0.97115 1.02076 1.24040 0.97832 0.94397 0.99192 1.86567 1.63835 1.32634 1.52404 0.85974 0.82067 0.78077 0.79549 1.15730 1.14668 1.18741 1.84451 1.36155 1.09079 1.31868 1.25808 1.05629 0.97984 1.03241 1.20237 0.99409 0.95952 1.01259 0.90620 0.88646 0.87934 0.89910 0.89615 0.91203 0.90303 0.91243 0.90895 0.90327 0.91207 0.92373 0.93288 0.92381 0.91774 0.93069 0.91971 0.92108 0.93346 0.92096 0.83246 0.87993 0.75667 0.78619 0.82809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.12 11.34 127.77 1.45 1.57 16 2 N -0.37 -3.11 4.05 -356.89 -1.45 -4.56 16 3 N -0.32 -3.60 12.56 -47.57 -0.60 -4.20 16 4 C 0.06 0.51 7.16 43.02 0.31 0.82 16 5 C 0.17 0.48 5.75 71.24 0.41 0.89 16 6 O -0.63 -0.93 7.88 -148.98 -1.17 -2.11 16 7 Si 1.32 -2.97 8.45 68.60 0.58 -2.39 16 8 C -0.52 0.55 8.50 113.37 0.96 1.51 16 9 C -0.52 0.96 8.50 113.37 0.96 1.93 16 10 C -0.38 0.43 0.53 -10.80 -0.01 0.42 16 11 C -0.14 -0.02 7.84 71.98 0.56 0.55 16 12 C -0.14 0.24 7.85 71.98 0.56 0.81 16 13 C -0.14 0.12 7.85 71.98 0.56 0.69 16 14 C -0.21 -1.78 8.30 22.21 0.18 -1.60 16 15 C 0.15 1.19 5.30 40.67 0.22 1.41 16 16 C -0.04 -0.20 5.40 -21.20 -0.11 -0.32 16 17 C -0.16 -0.54 5.80 24.88 0.14 -0.39 16 18 C -0.04 -0.01 2.42 71.24 0.17 0.16 16 19 O -0.55 -1.11 10.31 -148.98 -1.54 -2.64 16 20 Si 0.92 -0.71 26.41 68.60 1.81 1.10 16 21 H -0.23 0.13 7.11 99.48 0.71 0.84 16 22 H -0.22 0.49 7.11 99.48 0.71 1.19 16 23 H -0.26 -0.91 7.11 99.48 0.71 -0.21 16 24 S 0.12 0.07 20.87 -56.49 -1.18 -1.11 16 25 C -0.19 0.33 11.18 66.65 0.75 1.08 16 26 C -0.14 -0.11 8.68 21.40 0.19 0.07 16 27 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 28 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 29 H 0.10 -0.25 5.72 -2.39 -0.01 -0.27 16 30 H 0.08 0.03 7.21 -2.39 -0.02 0.01 16 31 H 0.09 0.00 7.21 -2.39 -0.02 -0.02 16 32 H 0.07 -0.09 7.48 -2.39 -0.02 -0.11 16 33 H 0.08 -0.16 7.79 -2.39 -0.02 -0.18 16 34 H 0.07 -0.01 7.79 -2.39 -0.02 -0.02 16 35 H 0.07 -0.11 7.79 -2.39 -0.02 -0.13 16 36 H 0.08 -0.21 7.79 -2.39 -0.02 -0.23 16 37 H 0.07 -0.14 7.48 -2.38 -0.02 -0.16 16 38 H 0.06 -0.04 7.80 -2.39 -0.02 -0.06 16 39 H 0.05 0.04 8.14 -2.38 -0.02 0.02 16 40 H 0.06 0.04 7.97 -2.38 -0.02 0.02 16 41 H 0.06 -0.21 7.79 -2.39 -0.02 -0.23 16 42 H 0.05 -0.03 8.14 -2.38 -0.02 -0.05 16 43 H 0.06 -0.18 7.79 -2.39 -0.02 -0.20 16 44 H 0.06 -0.05 7.96 -2.39 -0.02 -0.07 16 45 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 46 H 0.06 -0.14 7.79 -2.38 -0.02 -0.15 16 47 H 0.15 1.03 7.89 -2.91 -0.02 1.01 16 48 H 0.10 -0.30 7.96 -2.39 -0.02 -0.32 16 49 H 0.39 -2.30 8.62 -74.06 -0.64 -2.94 16 50 H 0.20 -1.44 8.06 -2.91 -0.02 -1.46 16 51 H 0.15 -0.32 7.27 -2.91 -0.02 -0.34 16 Total: 0.00 -15.23 418.12 4.80 -10.42 By element: Atomic # 1 Polarization: -5.16 SS G_CDS: 1.03 Total: -4.13 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 7.32 Total: 9.60 kcal Atomic # 7 Polarization: -6.71 SS G_CDS: -2.04 Total: -8.76 kcal Atomic # 8 Polarization: -2.04 SS G_CDS: -2.71 Total: -4.75 kcal Atomic # 14 Polarization: -3.68 SS G_CDS: 2.39 Total: -1.28 kcal Atomic # 16 Polarization: 0.07 SS G_CDS: -1.18 Total: -1.11 kcal Total: -15.23 4.80 -10.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_18051846_15493832.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.178 kcal (2) G-P(sol) polarization free energy of solvation -15.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds